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  1. Clone 'AHC0AAA251YA07' > 
  2. Transcript 'KH2012:KH.C11.521.v1...'

Transcript Model

Transcript Id

KH2012:KH.C11.521.v1.A.SL2-1

Possible name(s)

DDX58; DICER1; FANCM

Gene model

KH2012:KH.C11.521

Location

KhC11 [1,882,525 / 1,898,337]

Sequences

Amino acid sequence

Length: 1,379

>KH.C11.521.v1.A.SL2-1
VLWKYQKSMDSFDKSAGNIWIYPTNYPVRDYQLSITKTALFKNTLVVLPTGLGKTFIASV
VMYNFYRWFPQGKIIFIAPTKPLVAQQSKACYDIMGIPADDQAEMTGSSMQVKKRQDLWT
NKRVFFLTPQLFNNDLASGTCPACDIKCVVFDEAHKAQGNYAYCQVIQKILVHSKNFRVL
ALSATPGSNMFAVQQVITNLLISTTEIRSEDAIDVRQYTHTRTVEKVVVKLCDRIMMFKE
KYLAVIQVLINRLVSNDILYHKDAKNITKYALLMARDQFRKVSGLHKASMCIIEGDFATA
ISLYHGLELLLQHGMKSFFIFLKGIMDGAKANLRTRNVLSANDQFQEIYQELTDLFSSHN
TNTYVQTHKEAYSDLSICYSHPKLRKLEEIVLTYFHNIQQCADTSNKSTETKVIVFCQYR
DSVQEVTDLLQQHEPLIRPIKFVGHAPTAKNESPCREGNKSKRFTQKDQLEAVARFCSGV
YNTLIATCVGEEGLDIGAVDLIVCFDSHRSPIRLVQRMGRTGRKRNGKIVMLITEGKEER
DYNSSVASRKSIGKAMHAGSKSLQYYPHNPPMIPHGIKPVCHKMFITVKKLPSNTKKRKI
STDSLNSYFKSTSKESTKSLFLSADEIMEWKRDFYIERDELSHIPKVSSNSACIYLNKEF
KKQEIAPKVMVDWLPWQCRLQTTKLVEHSGRTKLLHEMLTRNDSVITMETNDREKPTKQS
EPIIISPTLDILPSKDNVRSPHKQNKNFGDIREIFSKVSKINSIKKIADIAKLFTNHIDF
PDRFIKSSNYLQNAVTDSKPQIICEKTVRLNHKDFDNGDKFEKFGLGLSKNIPQVSPVLV
MEESNSVKTEKIILEEKHQELSTSPVTTHMNCPQTVNTTSAITTSSSCSFNLFLSGTSGG
KDCLDTNISNVNGKSLLPLVKNHAHCDSNTTLDSPDIETPDFGFPDIFALDLDPPNELIE
DNPAEKKPAVNKSLKRKSDCMVDSSCIIPETQEENIPPNKLDPPCKKLKESLKHIKQMSF
HELEQTFDVSADLFDPEFQVDFNLTTLVDCTSFTSSPVVSSAIPKHSVCNTSTERKAAGN
ITTDKKVLNGENYTRACQNWETTTDICDKMKNKVAEETFEDDESFLSALVKRKQRKAKCL
ESDESLNETGKAIYITSTDNISDTDSESFFHVKKEQTKFDHPRSVLPMNQSLFENKIQCN
KQSTPKLLKFHGKVKPTVMQTKDHAKMFIDNEAEVSGDCDITEDDLSLTDEEMLAFVNDA
TQLTQHIDPTTEKSPDEKAMYLKSLHSSEWLKCKQNVEPRYRRNIEVFSQEVETDYSNYL
EDSFIVEHEDSNPPVDHGEITLLSQLPDYSAAKAKTRNQVKMLNVKKKKKRKLIVDFDS

Nucleotide sequence

Length: 4,809

>KH2012:KH.C11.521.v1.A.SL2-1
TTGTTTTATGGAAATACCAAAAAAGTATGGATAGTTTTGATAAATCTGCGGGAAATATTT
GGATTTATCCGACCAACTATCCTGTACGTGATTATCAACTTTCTATAACTAAGACTGCAT
TGTTTAAAAACACACTTGTTGTTTTACCAACTGGTCTTGGCAAAACTTTCATTGCTTCTG
TTGTTATGTACAACTTTTACCGATGGTTTCCACAAGGCAAGATTATTTTTATTGCACCGA
CAAAGCCACTGGTAGCTCAACAAAGCAAAGCTTGTTATGACATTATGGGAATCCCTGCAG
ATGATCAAGCTGAAATGACAGGGTCTTCTATGCAAGTAAAAAAACGACAAGATTTGTGGA
CAAACAAGCGTGTATTCTTTCTTACACCTCAACTATTCAATAATGACCTCGCCAGTGGGA
CATGTCCTGCTTGTGATATTAAATGTGTTGTGTTTGATGAAGCACATAAAGCTCAAGGGA
ATTATGCATATTGTCAGGTTATTCAAAAAATTTTAGTTCATTCCAAAAACTTCAGAGTTC
TTGCCTTGAGTGCCACACCAGGTTCAAATATGTTTGCAGTTCAACAGGTCATTACAAATC
TTTTAATATCTACAACCGAGATTCGTTCTGAAGACGCAATAGATGTACGCCAATACACGC
ACACACGAACTGTGGAAAAAGTTGTTGTGAAACTTTGTGATAGGATCATGATGTTCAAAG
AAAAATATTTAGCTGTGATACAAGTTTTAATCAATCGCCTTGTTTCAAATGACATTCTTT
ACCATAAAGATGCAAAAAACATTACAAAATATGCGCTGCTAATGGCAAGAGATCAATTTC
GGAAAGTTTCTGGTTTGCATAAAGCGTCTATGTGTATTATCGAGGGGGATTTTGCGACTG
CTATCTCTCTTTACCATGGTCTTGAACTACTTCTTCAACATGGAATGAAATCTTTTTTTA
TATTTTTGAAAGGAATAATGGATGGTGCAAAAGCCAACTTGAGAACTAGAAATGTTTTGT
CCGCTAATGACCAATTTCAGGAAATCTATCAGGAGTTGACCGACTTGTTTTCATCACACA
ACACAAACACTTATGTGCAAACGCACAAAGAAGCATATTCTGACTTATCTATATGCTACA
GTCATCCGAAATTAAGGAAATTAGAAGAAATAGTTTTAACATACTTTCACAATATACAGC
AATGTGCAGATACTTCAAACAAATCAACTGAAACCAAAGTTATTGTGTTCTGTCAATATC
GTGACAGTGTACAAGAAGTAACAGATCTTCTTCAACAACATGAACCGCTTATTCGTCCGA
TTAAATTTGTTGGTCATGCCCCAACAGCAAAAAACGAAAGTCCTTGTAGAGAGGGAAACA
AAAGTAAAAGATTTACTCAAAAAGATCAACTAGAGGCTGTTGCTCGATTTTGTTCGGGTG
TTTACAACACGTTGATCGCAACATGTGTTGGAGAGGAAGGGTTGGACATCGGGGCAGTTG
ATCTCATTGTGTGTTTCGACTCCCACAGAAGTCCGATCCGCCTCGTGCAGAGGATGGGAA
GAACTGGGAGGAAAAGAAACGGAAAGATTGTGATGTTAATCACTGAAGGGAAGGAAGAAA
GAGATTACAACTCAAGCGTAGCAAGTCGAAAATCGATTGGCAAAGCAATGCACGCTGGTA
GTAAATCATTGCAATATTACCCACATAATCCACCTATGATACCACATGGTATTAAACCTG
TTTGTCACAAAATGTTTATAACTGTTAAAAAGTTGCCTTCCAATACAAAAAAGAGAAAAA
TATCGACCGATTCTCTTAATTCCTACTTCAAAAGTACATCAAAAGAATCAACCAAGTCCT
TGTTTCTGTCTGCTGATGAGATAATGGAGTGGAAAAGAGATTTTTATATTGAGAGAGATG
AATTATCACATATTCCGAAAGTATCTTCCAACTCAGCATGCATTTATTTAAATAAAGAGT
TTAAGAAACAAGAAATTGCTCCAAAAGTTATGGTGGATTGGTTACCATGGCAATGTAGAC
TCCAAACAACTAAGCTTGTGGAACATTCTGGAAGGACCAAACTTTTGCATGAGATGTTAA
CAAGAAATGATTCAGTCATTACAATGGAAACAAATGATAGAGAAAAACCAACAAAACAAT
CTGAACCAATTATTATTTCACCAACACTAGATATTTTACCATCAAAAGACAATGTTCGGT
CTCCACACAAACAGAACAAAAACTTTGGCGACATAAGAGAAATATTTTCAAAAGTATCAA
AAATAAACTCAATCAAGAAAATCGCAGATATAGCAAAACTTTTTACAAATCACATTGATT
TTCCTGATCGGTTTATAAAGAGCTCAAATTATCTCCAAAATGCTGTCACTGACTCAAAAC
CACAAATTATCTGTGAAAAAACTGTTCGTTTAAACCATAAAGATTTTGATAATGGTGACA
AGTTTGAAAAATTTGGTTTGGGTTTGTCTAAAAATATCCCACAAGTCTCTCCAGTGTTAG
TTATGGAGGAAAGTAATTCTGTAAAAACTGAGAAAATTATTTTGGAGGAAAAACATCAAG
AGTTAAGTACTTCTCCAGTTACAACGCATATGAACTGCCCACAAACTGTTAATACTACTT
CTGCCATCACCACTTCAAGCTCATGTAGTTTTAATTTGTTTTTAAGTGGTACTAGTGGTG
GAAAAGATTGCTTAGATACCAATATTTCAAATGTTAATGGTAAGAGTTTGCTGCCATTGG
TGAAGAATCATGCGCACTGTGACAGCAATACAACACTGGATAGTCCTGATATAGAAACTC
CTGATTTTGGTTTTCCTGATATATTTGCTCTTGATCTGGACCCCCCTAATGAATTAATTG
AGGACAACCCTGCAGAAAAGAAACCAGCAGTAAACAAATCTCTGAAACGAAAATCTGACT
GCATGGTGGATTCCTCATGTATCATTCCAGAAACACAAGAGGAGAATATTCCACCCAACA
AGCTGGACCCTCCCTGTAAGAAACTTAAAGAATCACTAAAACATATAAAACAGATGTCCT
TCCATGAACTTGAACAAACGTTTGATGTGTCTGCTGATCTATTTGACCCAGAATTTCAAG
TTGATTTTAATTTGACCACATTAGTTGACTGTACTTCTTTTACGTCAAGCCCGGTGGTCA
GTAGTGCGATACCAAAACACTCGGTGTGCAACACATCTACAGAGAGAAAAGCTGCGGGAA
ATATTACGACCGATAAAAAAGTTTTAAATGGGGAAAATTATACAAGAGCTTGTCAGAATT
GGGAAACAACTACGGATATTTGTGATAAAATGAAAAACAAAGTTGCAGAAGAAACATTTG
AAGATGATGAGTCATTTTTATCTGCGTTGGTTAAAAGAAAACAACGGAAAGCAAAATGTC
TTGAATCTGATGAATCCTTGAATGAAACTGGGAAAGCAATCTATATAACCTCAACTGACA
ATATATCAGATACAGATTCAGAAAGTTTTTTTCATGTTAAAAAGGAGCAAACAAAATTTG
ATCATCCCAGGTCAGTGTTACCAATGAATCAAAGCTTGTTTGAAAATAAAATTCAATGCA
ACAAACAATCAACTCCAAAACTGCTAAAGTTTCACGGAAAAGTTAAACCAACTGTGATGC
AAACTAAAGATCATGCAAAGATGTTTATCGACAATGAAGCGGAAGTAAGTGGTGATTGTG
ACATCACAGAAGATGATCTATCACTCACAGATGAAGAAATGTTGGCTTTTGTAAATGACG
CAACGCAACTGACTCAACACATCGATCCAACCACTGAGAAATCACCCGATGAGAAGGCAA
TGTATCTTAAATCTCTACATTCAAGTGAGTGGCTGAAATGCAAGCAAAATGTTGAACCAC
GCTACAGACGAAATATTGAGGTTTTTTCCCAGGAGGTGGAAACAGATTATTCTAATTATT
TGGAAGATAGTTTTATCGTGGAGCACGAAGATTCAAACCCTCCTGTTGACCACGGTGAAA
TAACTCTCTTATCTCAATTACCAGATTACTCTGCTGCGAAAGCAAAGACACGAAATCAGG
TTAAGATGCTGAATGTGAAAAAGAAAAAAAAGAGAAAGCTCATCGTTGATTTTGATTCTT
GAGTCAATCCTACACCTGTTCGGATAATAAGTTTTAGTTCACACAGTTGGCATAAGAGTA
CTTAAGTCGTTTTTGCTCTTTTTTCTGTATAAGTGTGCCTAAGGCTGAAAACCAAATTGT
TCTTTTTTGTCTTGTGAACTTTCTACTTATCTTTTGTGTTTGTGGTTTCAGTTTATTCTT
TTTATCACTTACCGAACATTAATCTGCTGTATGTCTTGCCGGTACAAGAACTCATAATGG
GTTGCATATAACCTATGCTACAGGTTGGGCATATATGGGCAGCCCTGGCTTATGCAAACA
AAGTGAAATTTAAACGGTGGGGTTGAGTGGTTAGTCGTATCTGATTTCTATCTCACTCTC
TAAACTCTTGTTTTCGTCTTAACAATTTTCAGATGTGGCACGTACTCAAATATTGTGTGT
AATGTGTATGTGGCAACGTCTGAAATGGCAAAGTTGTGTTTTTTAATAATAGTTTGTATT
TATTGATTTTGAACTCTATATTTATTATTGGAAGAAATGACTATGTGTACTACCTCAAAA
GTGTTACACAGTACCTTTTTTTACTTCGTTTTTTTCACATCATTATTTGCAATATAGATT
ATATTCCAATAAATCTTCATTACAAAATGTTTTTGCTGACAAAAAACAAAACTTATGAAA
AGACAAAAA

InterProScan

SMART
Helicase_ATP-bd (IPR014001) - T[24-218] 5.5E-26
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[35-204] 21.757
Pfam
Helicase/UvrB_N (IPR006935) - T[40-186] 6.3E-20
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[71-224] 8.11E-44 - T[383-539] 8.11E-44
ProSiteProfiles
Helicase_C (IPR001650) - T[397-564] 16.429
Pfam
Helicase_C (IPR001650) - T[405-524] 1.8E-17
CDD
Helicase_C (IPR001650) - T[412-532] 1.99086E-19
SMART
Helicase_C (IPR001650) - T[424-525] 4.9E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
FANCM_HUMAN 48.784 % 684 0