- Clone 'cien73165' >
- Clone 'AHC0AAA192YL21' >
- Clone 'ciad051j14' >
- Transcript 'KH2012:KH.S696.5.v1....' >
- Transcript 'KH2012:KH.C11.607.v1...'
Transcript Model
Transcript Id
KH2012:KH.C11.607.v1.A.SL1-1
Possible name(s)
PAFAH1B1; WDR5; WDR5B
Gene model
Location
KhC11 [4,467,521 / 4,474,350]
Amino acid sequence
Length: 420
>KH.C11.607.v1.A.SL1-1
CRPIRCNRNNINMVLSTRQRDELNLAISEYLRANGYSKALDAFKEEADLPEQPDKKYEGL
MEKKWTSVVRLQRKVMDLEAKLNELQKETRDGLTPHNKKDPSEWIPRPPERCALSGHRNP
ITRVIFHPVYSVVLSAAEDSTIKVWDYETGDFERTLKGHTDAVQDISFDPTGKVLASCSA
DLSVKIWDFVEFECTKTLTGHDHNVSSVSFMPDGDHIVSASRDKTIKLWELATGYCIKTF
LGHKEWVRMVRPNMDGSLLASCSNDQTVRVWLTATTECKMELREHDHVVECLSWAPESAA
ANICAAAGIEVRKGEKVGPFIVSGSRDKTLKIWDVSTGQCLFTLIGHDSWIRAAMFHPRG
KFLITASDDKTLRVWDIKNKRCHKTLAAHEHFVTDLDVHKSAPYIITGSVDLLVKVWECR
Nucleotide sequence
Length: 1,893
>KH2012:KH.C11.607.v1.A.SL1-1
TGTCTTAATTTAAATTGACTCTGCGTTCAACTTTTTATTGATGTAGGCCGATACGATGCA
ATAGAAATAATATAAACATGGTTTTATCGACGAGACAGAGAGATGAATTAAATCTCGCCA
TCTCTGAATATCTTCGTGCCAACGGTTACAGCAAAGCTCTCGATGCTTTTAAAGAAGAAG
CTGACCTGCCCGAACAGCCAGATAAGAAATATGAAGGTTTGATGGAGAAGAAATGGACTT
CAGTCGTCCGTCTGCAGCGAAAGGTAATGGACTTAGAAGCAAAACTAAATGAACTCCAAA
AAGAAACCCGCGATGGCCTCACCCCCCACAACAAGAAAGATCCTTCAGAATGGATTCCCC
GGCCACCAGAACGATGTGCACTCAGTGGACATAGAAATCCCATAACTCGGGTGATATTCC
ATCCCGTCTACAGTGTTGTGTTGTCTGCTGCAGAAGACTCTACTATCAAGGTATGGGATT
ATGAGACAGGGGATTTTGAACGAACTTTGAAAGGTCATACTGATGCAGTTCAAGATATTT
CGTTTGATCCGACTGGGAAAGTATTAGCATCCTGCTCTGCTGATCTCTCCGTGAAAATTT
GGGATTTTGTTGAATTTGAATGTACCAAGACACTGACAGGCCACGACCATAATGTTTCAT
CTGTCAGTTTCATGCCAGATGGTGACCATATCGTATCAGCAAGTCGAGATAAAACAATTA
AGTTGTGGGAGTTGGCTACTGGATATTGCATAAAAACTTTTCTTGGCCACAAAGAATGGG
TTCGAATGGTACGACCGAATATGGACGGATCATTACTTGCTAGCTGCTCTAATGACCAAA
CTGTTCGTGTTTGGCTCACTGCTACCACCGAGTGTAAGATGGAATTACGAGAGCATGACC
ACGTGGTGGAGTGCTTGTCATGGGCTCCTGAATCAGCGGCCGCTAATATTTGTGCAGCTG
CTGGGATTGAGGTAAGAAAGGGCGAAAAAGTTGGTCCGTTTATTGTGTCCGGCTCGAGAG
ACAAAACGCTAAAGATATGGGACGTATCAACAGGCCAATGTCTGTTTACTCTCATTGGTC
ACGATAGCTGGATTCGAGCGGCCATGTTTCATCCACGCGGGAAGTTTCTCATCACAGCAT
CTGACGATAAAACACTCAGAGTTTGGGACATCAAGAATAAAAGATGTCACAAAACTTTGG
CAGCTCATGAACATTTTGTTACCGATCTAGATGTCCACAAGAGTGCGCCATACATCATCA
CTGGCAGTGTTGACCTCCTCGTGAAAGTTTGGGAATGCCGGTGAATGGCAACACTGGAAA
TGACGCAGTAACGCACTCATGTTACCTTACAAACAATGGCGGCGTGTGAATTGCAATTGT
AGGGCACGGAACTTAACGCTGATTAGCATCGATTGTAATTTATTATATTTTATCTGGACG
GGAATTATTGCAGTGAGCTCAAGATATAAAGAAGCAGACGCCCAAAGCTGCTCTGTGTGT
TCCTTAGGCAATTGTGTGGTTTGAGACACGCGCTGCACTAGCTTATATCACAAACATTGC
TGCGTTGGCTTGCTGTTTAAAACAATAATCCTACATCTGTTTAAACATGACAAAGTAGGA
TAGGTATAGTGTTAGTTCCCCATTGTTAGGTTTGAATAGGGATTGTTGCATCACACACAT
GGTTTGTCAGGATTTCTATTGATGTATGTTCTGTATATAATGACATTTTAAGCCAAGGTT
AATCAATATACTTATTAAATTAACTTTATAATTTGCATCGCAACCTGTCACATCTCCTAA
GCCGATATATACCTTTGTAAGTCTTAACATTAATCAGTAATTGAAACGCATGCCTTTTCT
TGTAATAAACCTTTTTGAAATGAAGTTCCAAAA
| PIRSF |
Dynein_regulator_LIS1 (IPR017252) - T[11-419] 4.9E-161 |
| Hamap |
Dynein_regulator_LIS1 (IPR017252) - T[13-418] 39.547 |
| SUPERFAMILY |
LIS1_N (IPR037190) - T[14-87] 1.96E-22 |
| ProSiteProfiles |
LisH (IPR006594) - T[19-51] 10.508 |
| SMART |
LisH (IPR006594) - T[19-51] 6.9E-6 |
| Pfam |
LisH (IPR006594) - T[21-47] 4.6E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[104-417] 5.76E-99 |
| SMART |
WD40_repeat (IPR001680) - T[107-146] 3.2E-6 - T[149-188] 5.3E-11 - T[191-230] 1.2E-11 - T[233-272] 5.2E-7 - T[275-334] 1.0E-6 - T[337-376] 8.5E-12 - T[379-418] 8.4E-7 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[111-420] 7.6E-134 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[114-155] 15.789 - T[156-197] 15.922 - T[198-239] 17.994 - T[240-271] 11.712 - T[318-343] 11.31 - T[344-385] 16.156 - T[386-420] 12.514 |
| Pfam |
WD40_repeat (IPR001680) - T[114-146] 3.3E-5 - T[153-188] 9.7E-8 - T[193-229] 1.3E-9 - T[235-271] 3.0E-5 - T[277-334] 9.0E-5 - T[338-376] 6.6E-9 - T[381-417] 4.6E-4 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[114-420] 74.374 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[175-189] . - T[217-231] . - T[321-335] . - T[363-377] . - T[405-419] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[217-231] 1.5E-9 - T[321-335] 1.5E-9 - T[363-377] 1.5E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 30.539 % | 171 | 1.12E-49 |
| WDR5B_HUMAN | 30.321 % | 168 | 1.3E-48 |
| LIS1_HUMAN | 70.976 % | 639 | 0 |