- Transcript 'KH2012:KH.C1.17.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.17.v1.A.SL1-1
Possible name(s)
PABPC1; PABPC1L; TRNAU1AP
Gene model
Location
KhC1 [3,215,709 / 3,221,174]
Amino acid sequence
Length: 330
>KH.C1.17.v1.A.SL1-1
FYNARQRCLTGQWRKLEPYMDETFVNKAFLQVSQPVSVKVIRRKDNGLPAGYCFIEFPSE
AEAERVLKLVNGTTINGSNPPKRFRLNRSQAGKMWDIGPSFSIFVGDLDATVTDDKLEDF
FLKRYRSVKGAKIMYEEGGISRGYGFVRFSDEAEQKRALQEMQGIRGLGAKPIRVSVATP
KGKMAPSTNSSTTDTTTASIPTAYDDATAYAQQLLQMQQYTDQYKYYQQYCDYYNYQQQY
SYYQQQAQNSQAYARANVEQYASTEHYQASRLHQQENNNNKLEDPNPAFNKEFENAAYIA
QKTLLIDCLGSHWQPIDSYTSKIPSYSIRS
Nucleotide sequence
Length: 1,497
>KH2012:KH.C1.17.v1.A.SL1-1
GTCGTTGGGATTTAAGTTATAGTTTAGCTTATTGCGCCTCGACCTTTGTCAGTGGATTAA
GTTTAAAGCAAGAAATGCTGAAATAGCTTCCTTTGAAGGGCGTGTACCCCACACGCTACA
TATTGATGCAACCAACTTAATTTTACAATGCTAGGCAACGATGCCTAACCGGGCAGTGGC
GTAAGTTGGAGCCGTATATGGACGAGACTTTTGTAAACAAAGCATTTCTGCAAGTAAGCC
AACCTGTGTCCGTGAAAGTTATCAGAAGGAAGGACAATGGCCTGCCAGCGGGTTATTGTT
TTATAGAGTTCCCAAGTGAAGCTGAAGCTGAGAGAGTGCTGAAACTTGTCAACGGAACAA
CCATTAATGGAAGTAATCCTCCAAAGAGATTTCGACTGAACAGATCTCAAGCTGGGAAAA
TGTGGGATATTGGACCATCATTTTCAATATTTGTTGGTGACCTCGATGCCACAGTAACAG
ATGATAAACTAGAAGACTTTTTCTTGAAGAGATATCGCTCGGTGAAAGGGGCAAAGATAA
TGTATGAAGAAGGAGGGATTTCAAGAGGATATGGATTTGTTCGGTTTAGTGATGAAGCTG
AACAGAAAAGAGCTTTACAAGAAATGCAAGGGATTAGGGGTCTTGGGGCAAAACCTATTC
GTGTTAGTGTCGCTACACCAAAAGGAAAAATGGCCCCAAGTACCAACAGTAGCACAACAG
ACACAACCACTGCCAGTATACCTACAGCTTATGATGATGCTACAGCATACGCACAACAGT
TGTTACAAATGCAGCAATACACTGACCAGTATAAATACTACCAACAGTATTGTGACTATT
ACAACTATCAGCAACAATACAGCTACTACCAACAGCAAGCACAAAACAGCCAGGCATATG
CGAGAGCTAATGTTGAGCAATATGCTTCAACCGAGCACTATCAAGCCAGCAGGTTGCACC
AGCAAGAAAACAACAACAATAAACTTGAGGACCCCAATCCTGCATTCAACAAAGAATTCG
AAAACGCTGCATACATTGCCCAAAAGACTTTACTAATTGATTGTCTAGGTAGCCACTGGC
AACCAATAGACTCCTATACTTCTAAAATCCCAAGTTATAGCATTAGATCCTGACTTGATA
AAACTATTAACATTTTTGAACTAATTTCCACATTTTTCGTTGCCGCTTTTTTAAGACGTT
ATATTAACGCTAAGATAATAAGAAATGAGCTGGTGTACAGTTTTATGTAATATTCCATAC
TGCACATATACGTTGTTATATTTTCTTGGCCGCATTTTTGGTTTTTGTTAAGTTTTTGTT
ATTGTTTCAAAAAAAAACGCTATACTTCGGAAAAGCGTATTTTTAAAAGGTTTTGTTTCG
GGCAATATTAGACGTTTCTGCCGCCGTTTTTAGTTACTGTTTCTACCAAGCGTGGTAACA
CCGCCAAATTATCATCTATACAAACCATTTTCAATTAAAACTCTCATGGCCCCTTCT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[12-89] 4.9E-16 - T[100-177] 2.2E-21 |
| SMART |
RRM_dom (IPR000504) - T[14-84] 0.0023 - T[102-176] 4.3E-15 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[15-181] 1.78E-30 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[16-91] 9.712 - T[101-180] 17.012 |
| Pfam |
RRM_dom (IPR000504) - T[16-78] 2.2E-8 - T[103-171] 1.1E-13 |
| CDD |
SECp43_RRM2 (IPR034510) - T[100-181] 1.3685E-49 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSAP1_HUMAN | 38.339 % | 206 | 7.81E-65 |