Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C11.720.v1.A.nonSL2-1

Possible name(s)

CIRBP; TRA2A; TRA2B

Gene model

KH2012:KH.C11.720

Location

KhC11 [3,638,147 / 3,641,283]

Sequences

Amino acid sequence

Length: 289

>KH.C11.720.v1.A.nonSL2-1
QPISKMSDTEAGEYKSKTKSPVKQSRSRSRSRSADSDSSRGSKKSRSLRRSYSRSRSRSY
RSRSRSGSRRRYRRNSGSPRRSRSRSYSRGRHSSKSPMSGRKRHIGDRLNPPSGKCLGVF
GLSLYTNDSDLRSVFSRYGRITDINVVIDQKTGRSRGFGFVYFDNDDDAAEAKERANGME
LDGRNIRVDYSITKRAHTPTPGVYVGRPYAKPRDGDRYESRDRYDRGGDRHDRYYERDRY
DRGRYESRDRYRDDYRDRRDSYRRSPSPGYRRRSPSPYYRDRSPRDRYY

Nucleotide sequence

Length: 1,369

>KH2012:KH.C11.720.v1.A.nonSL2-1
AGTTGGTTAAAAAGAACAGAAAGGCGCCTCGTTTTATCTACTGGAATCCCAAATTTTAGG
CTGTGTTATCGACCGAATTTTTTCACTTTGCAAGCTTTAACAACCAATATCCAAGATGAG
CGATACAGAAGCTGGAGAATATAAATCGAAGACCAAGAGTCCAGTGAAGCAATCTCGGTC
CCGCTCACGATCAAGATCTGCGGATTCTGATTCTTCAAGAGGTTCCAAGAAATCAAGAAG
TTTAAGACGTTCGTATTCTCGTTCCAGATCACGTTCATACAGGTCACGTTCCCGATCTGG
TTCAAGACGCAGATATCGAAGAAACAGTGGAAGTCCAAGAAGGAGTAGGTCCAGGAGTTA
TTCAAGAGGCCGCCACAGCAGTAAATCTCCCATGTCTGGAAGGAAGCGTCATATTGGAGA
CAGATTGAACCCACCAAGTGGTAAATGCTTGGGAGTATTTGGTTTGAGTCTTTACACCAA
CGACAGTGATCTCAGAAGTGTATTTTCAAGATATGGAAGAATAACTGATATCAATGTTGT
AATTGATCAAAAGACCGGTCGTTCACGAGGGTTCGGATTTGTTTACTTTGATAATGATGA
TGATGCAGCTGAAGCAAAGGAGCGGGCTAACGGGATGGAACTTGATGGAAGAAATATTCG
TGTTGATTACTCGATCACCAAGCGAGCTCACACACCAACACCTGGTGTATATGTTGGGAG
ACCATATGCCAAGCCAAGAGATGGTGATAGATACGAATCAAGAGATCGATATGATCGTGG
TGGTGACCGACATGATAGATATTATGAACGTGACCGTTATGATAGAGGAAGATATGAAAG
CAGAGACAGATACAGAGATGATTACCGGGATAGAAGAGACAGTTACAGACGAAGCCCTTC
ACCTGGATACAGACGCAGATCTCCTTCTCCTTACTATAGAGATAGATCCCCACGTGACCG
TTACTACTAAATCGCATTGTATTGGCACAGTGGGGACTTGACCCTGAACACCAGTGACTT
GTTACATGTAGGTATTGTTGCCTGCTATGTGTGTAAAAAACACAATGTCTTGTCAATGTT
TACAAATTTGTGTGATTTGGTTCTTTATATTCACCACTTTGGAGACACTCCTAGGTTTTG
TACAAAGCGTAGAGTAAAACCTATTGTTTTGTGTAGCATACCATTCTTTCTAGTAGTTAT
TCTGACTTTTTATGTTCGCTGGTCTTCGCTTTTGTTGCCGCTGAATTGGAAATTTTTAAA
CTTTGGATCAAGATTTTGCTGCATGTCAGTAAAGTCTGTTGGTCTTTCTATGTAGCTCCT
CATACATTGTTACAACAGCTTCTTTCAAATAAACTTCAGTTTTACTCGT

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[49-200] 2.7E-31
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[109-221] 2.69E-30
ProSiteProfiles	RRM_dom (IPR000504) - T[115-193] 18.803
SMART	RRM_dom (IPR000504) - T[116-189] 3.0E-24
Pfam	RRM_dom (IPR000504) - T[119-187] 4.1E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRA2B_HUMAN	56.842 %	185	2.84E-57
TRA2A_HUMAN	57.143 %	160	6.15E-48
CIRBP_HUMAN	51.852 %	83.2	2.08E-19