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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C3.192.v2....' > 
  2. Transcript 'KH2012:KH.C9.404.v2....' > 
  3. Transcript 'Phfumi.CG.MTP2014.S2...' > 
  4. Transcript 'KH2012:KH.C11.720.v1...'

Transcript Model

Transcript Id

KH2012:KH.C11.720.v1.R.ND1-1

Possible name(s)

CIRBP; TRA2A; TRA2B

Gene model

KH2012:KH.C11.720

Location

KhC11 [3,638,157 / 3,641,283]

Sequences

Amino acid sequence

Length: 289

>KH.C11.720.v1.R.ND1-1
QPISKMSDTEAGEYKSKTKSPVKQSRSRSRSRSADSDSSRGSKKSRSLRRSYSRSRSRSY
RSRSRSGSRRRYRRNSGSPRRSRSRSYSRGRHSSKSPMSGRKRHIGDRLNPPSGKCLGVF
GLSLYTNDSDLRSVFSRYGRITDINVVIDQKTGRSRGFGFVYFDNDDDAAEAKERANGME
LDGRNIRVDYSITKRAHTPTPGVYVGRPYAKPRDGDRYESRDRYDRGGDRHDRYYERDRY
DRGRYESRDRYRDDYRDRRDSYRRSPSPGYRRRSPSPYYRDRSPRDRYY

Nucleotide sequence

Length: 1,359

>KH2012:KH.C11.720.v1.R.ND1-1
AAAGAACAGAAAGGCGCCTCGTTTTATCTACTGGAATCCCAAATTTTAGGCTGTGTTATC
GACCGAATTTTTTCACTTTGCAAGCTTTAACAACCAATATCCAAGATGAGCGATACAGAA
GCTGGAGAATATAAATCGAAGACCAAGAGTCCAGTGAAGCAATCTCGGTCCCGCTCACGA
TCAAGATCTGCGGATTCTGATTCTTCAAGAGGTTCCAAGAAATCAAGAAGTTTAAGACGT
TCGTATTCTCGTTCCAGATCACGTTCATACAGGTCACGTTCCCGATCTGGTTCAAGACGC
AGATATCGAAGAAACAGTGGAAGTCCAAGAAGGAGTAGGTCCAGGAGTTATTCAAGAGGC
CGCCACAGCAGTAAATCTCCCATGTCTGGAAGGAAGCGTCATATTGGAGACAGATTGAAC
CCACCAAGTGGTAAATGCTTGGGAGTATTTGGTTTGAGTCTTTACACCAACGACAGTGAT
CTCAGAAGTGTATTTTCAAGATATGGAAGAATAACTGATATCAATGTTGTAATTGATCAA
AAGACCGGTCGTTCACGAGGGTTCGGATTTGTTTACTTTGATAATGATGATGATGCAGCT
GAAGCAAAGGAGCGGGCTAACGGGATGGAACTTGATGGAAGAAATATTCGTGTTGATTAC
TCGATCACCAAGCGAGCTCACACACCAACACCTGGTGTATATGTTGGGAGACCATATGCC
AAGCCAAGAGATGGTGATAGATACGAATCAAGAGATCGATATGATCGTGGTGGTGACCGA
CATGATAGATATTATGAACGTGACCGTTATGATAGAGGAAGATATGAAAGCAGAGACAGA
TACAGAGATGATTACCGGGATAGAAGAGACAGTTACAGACGAAGCCCTTCACCTGGATAC
AGACGCAGATCTCCTTCTCCTTACTATAGAGATAGATCCCCACGTGACCGTTACTACTAA
ATCGCATTGTATTGGCACAGTGGGGACTTGACCCTGAACACCAGTGACTTGTTACATGTA
GGTATTGTTGCCTGCTATGTGTGTAAAAAACACAATGTCTTGTCAATGTTTACAAATTTG
TGTGATTTGGTTCTTTATATTCACCACTTTGGAGACACTCCTAGGTTTTGTACAAAGCGT
AGAGTAAAACCTATTGTTTTGTGTAGCATACCATTCTTTCTAGTAGTTATTCTGACTTTT
TATGTTCGCTGGTCTTCGCTTTTGTTGCCGCTGAATTGGAAATTTTTAAACTTTGGATCA
AGATTTTGCTGCATGTCAGTAAAGTCTGTTGGTCTTTCTATGTAGCTCCTCATACATTGT
TACAACAGCTTCTTTCAAATAAACTTCAGTTTTACTCGT

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[49-200] 2.7E-31
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[109-221] 2.69E-30
ProSiteProfiles
RRM_dom (IPR000504) - T[115-193] 18.803
SMART
RRM_dom (IPR000504) - T[116-189] 3.0E-24
Pfam
RRM_dom (IPR000504) - T[119-187] 4.1E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRA2B_HUMAN 56.842 % 185 2.84E-57
TRA2A_HUMAN 57.143 % 160 6.15E-48
CIRBP_HUMAN 51.852 % 83.2 2.08E-19