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- Transcript 'KH2012:KH.C12.105.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.105.v1.A.SL1-1
Possible name(s)
PRDM1; ZNF235; ZNF683
Gene model
Location
KhC12 [5,048,584 / 5,051,518]
Amino acid sequence
Length: 603
>KH.C12.105.v1.A.SL1-1
NINMSESCVFRRRPSTENLKSDVNGNNMASIGEVKGGGVSPERWVERPTMFHSPQEKNKS
RKSDFSVKSLLDHNVTSPSDSGYGSGSPSPDQNMISSPSWNIDGKHTKTTFLPIAPSSTN
CPPKDMCLSADLTPTAMFPLYYQRLLYAMNTHFLARQSAGQISTSPAGTQSMKLPPTALL
SSDVQAKAKRSETYRPTVPQKLEIKSERSEKKESKADYQNEALNLSLENVQLENKRETSP
KSDEPDTLKNNYSQRYFSKFSAAYEDMKHTKSENQHQLPYNTSQTATSGMPAPTFRPDYY
MMQMGKLLWENAVRKAAIAPSANQSNFNSTYAERLQKYMCAVASGRPDLINPAMFPMQGP
FPMGTPTPMLGNNASKNMKSFAGYENSRLSDHLKEKQRCTEARAPVVNRSPLFPQHSTGV
KIPNTSFHNFTTNMTPPKTTSPTSSVASSNNGDSSGNMNSRCKRGPNSGYKSLPYPLRKE
NGKIVYECNVCYKRFGQLSNLKVHLRVHTGERPFKCATCSKGFTQLAHLQKHNLVHTGEK
PHECNVCNKRFSSTSNLKTHMRLHNSNEYTCAGLNSMLGNVPSSLQSALHFHTGQSPSLR
RWY
Nucleotide sequence
Length: 1,956
>KH2012:KH.C12.105.v1.A.SL1-1
TGAAAGTGTAAAAAAATATTTATAACTAAACATATTGATTGAAATATAAATATGTCGGAA
TCATGTGTGTTCAGACGAAGACCGTCGACGGAAAACTTAAAATCCGACGTTAATGGAAAC
AATATGGCGTCCATAGGGGAAGTAAAAGGAGGCGGGGTCTCCCCCGAAAGATGGGTGGAG
AGACCAACCATGTTTCATTCTCCGCAAGAAAAGAACAAGTCAAGAAAAAGCGACTTCTCT
GTGAAGTCCTTGCTAGATCATAACGTTACTTCTCCCTCCGACAGCGGCTACGGTAGTGGG
AGTCCAAGTCCAGACCAGAATATGATCTCGTCACCAAGCTGGAACATTGATGGTAAGCAT
ACGAAAACAACGTTCTTACCGATAGCACCATCAAGCACCAATTGTCCACCGAAAGATATG
TGTTTATCTGCTGACTTAACCCCAACTGCTATGTTTCCACTTTATTACCAAAGACTGCTG
TACGCAATGAACACGCATTTTCTCGCGCGGCAATCGGCAGGGCAAATATCCACATCGCCG
GCGGGGACGCAGAGCATGAAACTCCCGCCAACAGCCCTTCTTTCTTCCGATGTCCAAGCG
AAGGCGAAACGAAGCGAAACATACCGACCGACTGTGCCGCAGAAACTTGAAATTAAATCT
GAGCGATCAGAAAAAAAAGAATCAAAAGCAGATTACCAAAACGAAGCTTTAAACCTATCG
CTTGAAAACGTTCAACTTGAAAACAAACGCGAAACAAGCCCGAAAAGCGACGAACCCGAC
ACTTTGAAAAACAATTACAGCCAAAGGTATTTTTCAAAGTTTAGCGCAGCTTATGAAGAT
ATGAAACACACCAAATCAGAAAACCAACACCAACTTCCATACAACACGTCACAAACCGCT
ACGTCAGGTATGCCGGCACCAACATTTCGACCCGACTACTACATGATGCAGATGGGGAAG
TTATTATGGGAGAACGCGGTGCGGAAAGCGGCGATCGCTCCTTCAGCCAACCAAAGTAAC
TTCAATTCAACTTACGCGGAAAGATTACAGAAATATATGTGCGCGGTTGCAAGTGGGAGG
CCAGATCTAATCAACCCGGCCATGTTTCCAATGCAAGGGCCTTTCCCAATGGGCACGCCA
ACACCAATGCTTGGGAATAACGCTTCAAAAAATATGAAGTCATTTGCAGGTTACGAAAAC
AGCCGCTTGTCCGACCACCTGAAAGAGAAACAACGATGCACTGAGGCCCGTGCGCCCGTG
GTGAATCGCTCCCCTTTGTTCCCCCAACATTCAACCGGTGTGAAAATACCAAATACGTCA
TTCCATAATTTTACTACAAATATGACCCCACCCAAAACCACCTCACCCACGAGTAGCGTA
GCTTCGTCCAACAACGGTGACTCTAGTGGCAACATGAACTCGCGCTGCAAACGAGGTCCG
AATTCTGGCTACAAGTCCCTGCCTTATCCCCTCCGCAAAGAAAACGGAAAGATTGTGTAC
GAATGCAACGTTTGCTATAAGAGGTTCGGACAGCTGTCCAATTTAAAAGTTCATCTACGA
GTTCACACCGGCGAGCGTCCGTTCAAATGCGCTACTTGTTCAAAAGGCTTCACACAGTTG
GCTCATCTACAGAAACACAACCTCGTACACACTGGTGAAAAACCACACGAATGTAATGTC
TGTAACAAACGCTTCAGCTCGACGAGTAATCTCAAAACTCACATGAGACTCCACAACAGT
AACGAATACACATGTGCTGGGTTAAACTCAATGCTCGGTAATGTCCCATCGTCACTTCAA
TCTGCGCTACACTTTCATACGGGCCAATCACCGTCGCTGAGGAGATGGTATTAAGTTACA
AACGCGAACTCGGCGTTGTAGCTTCTGCTGGAGTAACTTAAATTGGGAAACAACGCCCTT
TGATATTAAGTATGGCTGCCAAGGCAAAGACAACAG
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[475-523] 2.5E-13 - T[512-564] 6.57E-17 |
| SMART |
Znf_C2H2_type (IPR013087) - T[486-508] 0.0031 - T[514-536] 0.086 - T[542-564] 2.5E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[486-513] 16.228 - T[514-541] 15.687 - T[542-569] 12.736 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[488-508] . - T[516-536] . - T[544-564] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN235_HUMAN | 44.186 % | 113 | 4.25E-26 |
| PRDM1_HUMAN | 68.382 % | 190 | 8.88E-52 |
| ZN683_HUMAN | 55.195 % | 169 | 6.21E-46 |