- Transcript 'KH2012:KH.C12.116.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v1.A.ND4-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,553,867]
Amino acid sequence
Length: 824
>KH.C12.116.v1.A.ND4-1
MQESKKQLSQQGGNGKKQLKSRSNGSYRSSHGGGVNQLGGMYVNGRPLPEPIRQRIVNLS
HQGVRPCDISRQLRVSHGCVSKILARYYETGSIRPGVIGGSKPKVATHDVVMRITEYKRE
NPTMFAWEIRDRLLADEVCSQETVPSVSSINRIVRSKTSEFMKDNQKLSEQASLPSPLLN
MQMIKGDRKRTNTAPSTSLNLVNQQANGNSLQNVDLGGMQIIASGNDGNSGLAQYVSFAG
SEGQSNKPVEQPTLQGSNSNDQNRIYSLSNLLGITPSQAALLASNPAAFTQAAAVIGATP
TSSSNSNIVEPPKPSPSLPAVLASLPLGQQYELLKTVGGDLVTVQQVEEKSQESNSRLIS
VQPNKATNIQPSNQQILVNAQGQIVTQTSMLAPHGSQTRVISPSNVQQGGLYVTANGQVI
STAAAQNLIVANLDQPVQSSTNSINLNQLSGVDVMTSSVMTSSVRSTPTLTSPSNKTSKS
SSITIGANQQGLVTLTQQQIQQLAAQGVVIQPAPNHVSYQPVEQQNEKPDSEVVISESDC
VTRTSEESVVVETVSNEKASEKVSLEQISHTNEVNMTQEQQQLLKMLQSAILVKQEPSEE
SSNINQLLMATQQPGTAQLLSAAAALGAMQPSQTIAASSDTNTNSNNNNQHLILSAAGQL
QHQQITNNQNSNNNNSQLQQQIAVQMLPATSGSNNNNNNNGGNSNLGRSGTQLQLASGTL
TELQPVSSLLNQLRTQPQQAVTFSVANTVAALQPPPATALPSLVLPPASVTIATTPSSGI
PNTLTQPFTTIYNEAWKMATNVQVTRAQSSHESASSPSSGEKKS
Nucleotide sequence
Length: 3,088
>KH2012:KH.C12.116.v1.A.ND4-1
ATGCAAGAAAGCAAAAAACAGCTGAGTCAGCAAGGAGGCAACGGGAAGAAACAGTTAAAG
TCAAGAAGTAACGGAAGCTATAGATCGAGCCATGGTGGAGGAGTTAATCAACTTGGTGGA
ATGTATGTCAACGGAAGGCCTTTACCGGAACCAATAAGGCAACGCATTGTCAATCTATCT
CACCAAGGAGTTCGTCCGTGTGACATTTCTCGTCAGCTACGTGTATCGCATGGCTGTGTC
AGCAAGATTTTAGCAAGGTATTATGAGACCGGAAGCATTCGTCCTGGGGTTATTGGAGGT
AGTAAGCCGAAAGTGGCAACACATGATGTGGTGATGCGGATAACGGAGTACAAACGTGAA
AATCCTACCATGTTTGCTTGGGAAATACGTGACAGACTTTTGGCTGATGAAGTATGTTCA
CAAGAAACTGTACCAAGTGTTTCATCAATAAACAGAATTGTAAGAAGCAAAACTTCTGAA
TTTATGAAAGACAATCAGAAGCTTTCAGAACAAGCGAGTCTGCCTTCTCCATTGTTAAAC
ATGCAGATGATAAAAGGTGATAGAAAACGTACAAATACTGCACCAAGCACCTCCCTTAAT
CTTGTAAACCAACAAGCAAACGGCAACTCGTTGCAAAATGTGGACCTTGGTGGAATGCAG
ATTATTGCTTCTGGCAATGATGGCAACTCAGGGCTGGCACAATATGTCTCATTTGCAGGG
TCAGAAGGACAAAGCAACAAACCTGTTGAACAACCTACTTTGCAAGGATCCAACTCAAAC
GATCAGAATCGCATTTACAGTCTCAGCAACCTTCTTGGAATTACACCAAGCCAAGCTGCT
CTTCTAGCAAGCAACCCTGCAGCTTTCACACAAGCTGCTGCTGTGATTGGTGCAACCCCA
ACTTCATCATCCAATTCGAACATTGTTGAACCCCCCAAACCATCACCTTCTCTACCAGCT
GTACTCGCCAGCTTACCCTTGGGTCAGCAATATGAGTTGCTCAAAACTGTGGGTGGTGAC
CTTGTTACCGTGCAACAGGTGGAAGAGAAAAGTCAGGAGAGTAATTCCCGTCTTATATCA
GTCCAGCCAAACAAAGCAACCAACATACAACCTTCTAATCAGCAGATATTAGTCAACGCT
CAAGGACAAATTGTCACACAAACCAGTATGCTGGCCCCCCATGGTAGCCAGACACGTGTT
ATATCGCCATCCAATGTTCAACAAGGTGGGCTTTATGTGACAGCCAATGGTCAGGTGATT
TCAACTGCTGCAGCTCAAAACTTAATTGTTGCAAACCTTGACCAACCAGTGCAGTCCTCA
ACAAATTCCATAAATCTAAACCAACTGAGTGGTGTTGATGTTATGACATCATCAGTGATG
ACATCATCAGTTCGTTCGACACCCACCTTAACATCACCCAGCAACAAAACTTCCAAATCT
TCCTCCATAACTATAGGTGCAAACCAGCAAGGGTTAGTAACGCTCACCCAACAGCAAATA
CAACAGTTGGCAGCACAAGGTGTTGTAATTCAACCTGCTCCGAACCATGTTTCATACCAA
CCAGTTGAGCAACAGAACGAGAAGCCAGACAGTGAGGTGGTAATCTCAGAGAGTGATTGT
GTTACAAGAACATCTGAAGAATCTGTCGTTGTGGAAACTGTATCTAATGAAAAAGCTTCA
GAGAAAGTTTCACTTGAGCAAATATCTCACACAAATGAAGTAAATATGACACAAGAACAA
CAACAGTTACTTAAAATGCTACAGAGTGCAATCCTTGTCAAGCAAGAACCAAGTGAGGAG
TCGTCCAACATAAACCAGCTACTCATGGCAACACAACAACCTGGAACTGCCCAGTTATTA
TCGGCAGCTGCTGCACTAGGTGCAATGCAACCCTCACAAACTATTGCAGCTTCATCTGAC
ACAAACACCAACTCGAACAACAACAACCAACATCTTATTCTGTCAGCTGCTGGCCAACTA
CAACATCAACAAATAACCAACAACCAGAACAGCAACAATAACAACAGTCAACTACAACAG
CAAATAGCGGTGCAAATGCTTCCAGCAACTAGCGGCAGTAACAACAACAATAATAACAAT
GGTGGCAATTCAAATCTTGGAAGGTCTGGTACACAACTCCAACTTGCATCGGGAACATTA
ACTGAGCTTCAACCTGTCAGTTCTCTTCTTAACCAACTCCGCACACAACCCCAACAAGCT
GTTACCTTTTCTGTTGCAAATACTGTTGCTGCACTTCAACCACCACCAGCTACAGCACTT
CCATCACTTGTTCTGCCACCTGCCAGTGTAACTATAGCCACCACCCCATCTAGTGGTATA
CCCAACACTCTTACACAACCGTTCACAACAATATACAATGAAGCATGGAAGATGGCTACC
AATGTGCAAGTTACAAGAGCTCAATCATCACATGAGAGTGCTTCCTCTCCTTCAAGTGGT
GAAAAAAAGAGCTAAGACACTAAGCTGTTCAACATCTAAGTGCCTTTTACCTGATGTAAA
TACCAGTGGCACATCTATAATACAGGTGTATTTATGGAACCAGTTAGGGCAGTCTTCAAA
ATAACAAAATTTGTTTTGTTTTCTGACATTTGAAATTTGTTAACTCTGGAGTTTACCACT
CCTAATGCCAAAGAAGTCCATCTTGTGGTACGAGCCCGTCTTATTTTTAGTTTATAAATC
ATCATTTCTCCATAAAGAACGTTAGTAAACAGTTATTTTTTTAAAGAAAACCATCATGCT
GCTTGTACAGTTTAGTAAAGATAGTTGATTTTAAATTTTATTTTAAATCAACAAAGAAAA
ACATGCCTAACTATCTGCCGTCTTGTTAAAGTTCTTTAACCTTTCTGTTAAAAATATATA
AATTTTTTATTTAAGACCCGCTGCCATGGGGGTTTTGAGTTTTGCACTACCCATACATGG
GGGTCTATTCTTCACCCGCTGCAACTACTATGGCCTGTCATTTAGCTTTTGTTTGTTTTT
GTAAATCCTGCCATTTTATTTTCCTTGTTCTGATTCTTGTTTTTTTTTTTGTATTTAGAA
ATTGTAAAGTACAAACAAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[24-99] 1.7E-38 - T[100-164] 9.2E-33 |
| SMART |
Paired_dom (IPR001523) - T[31-155] 1.3E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[31-157] 60.013 |
| CDD |
Paired_dom (IPR001523) - T[33-157] 1.15367E-72 |
| Pfam |
Paired_dom (IPR001523) - T[33-155] 1.4E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[34-155] 5.68E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[35-50] 1.5E-39 - T[53-71] 1.5E-39 - T[73-90] 1.5E-39 - T[91-108] 1.5E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[65-81] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.769 % | 235 | 5.32E-70 |
| PAX2_HUMAN | 81.6 % | 232 | 1.84E-68 |
| PAX8_HUMAN | 81.061 % | 236 | 1.34E-69 |