- Transcript 'KH2012:KH.S605.3.v1....' >
- Transcript 'KH2012:KH.C12.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C12.116.v2.A.SL3-1
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
KhC12 [1,531,558 / 1,548,007]
Amino acid sequence
Length: 1,138
>KH.C12.116.v2.A.SL3-1
ADSQIVIENDKEITPEMAEIAKATVKRSAAESDNSHLPKVLKQEDILENTQPKTNELLLT
VDQAGNANDHDHEKQMLELVDAAAHATSYTEEVVVQEDAKTNTDIDNSSTGILGDLSNLG
SDTTNGPVQIVVEQGDIKGDYLDQEDYQIDTSSVEPEPQQTNTATVAAPQGVNPSMMSNL
LHTAAAVAASQNAAAATVQVIPGQAAGTIQLVPAADVQKTREMMAAGLSPQSVNQSGEES
GKPSNQPVFTYLVTSQGTLIAAHASDGSELISGSNGTKPKRKNTGRGRRLSKNSKSIVAK
EEVGSEDGHGGGVNQLGGMYVNGRPLPEPIRQRIVNLSHQGVRPCDISRQLRVSHGCVSK
ILARYYETGSIRPGVIGGSKPKVATHDVVMRITEYKRENPTMFAWEIRDRLLADEVCSQE
TVPSVSSINRIVRSKTSEFMKDNQKLSEQASLPSPLLNMQMIKGDRKRTNTAPSTSLNLV
NQQANGNSLQNVDLGGMQIIASGNDGNSGLAQYVSFAGSEGQSNKPVEQPTLQGSNSNDQ
NRIYSLSNLLGITPSQAALLASNPAAFTQAAAVIGATPTSSSNSNIVEPPKPSPSLPAVL
ASLPLGQQYELLKTVGGDLVTVQQVEEKSQEQSNSRLISVQPNKATNIQPSNQQILVNAQ
GQIVTQTSMLAPHGSQTRVISPSNVQQGGLYVTANGQVISTAAAQNLIVANLDQPVQSST
NSINLNQLSGVDVMTSSVMTSSVRSTPTLTSPSNKTSKSSSITIGANQQGLVTLTQQQIQ
QLAAQGVVIQPAPNHVSYQPVEQQNEKPDSEVVISESDCVTRTSEESVVVETVSNEKASE
KVSLEQISHTNEVNMTQEQQQLLKMLQSAILVKQEPSEESSNINQLLMATQQPGTAQLLS
AAAALGAMQPSQTIAASSDTNTNSNNNNQHLVSSNPQVLTAAQLQQLTSNLQQQQQHQQQ
QQGIVQILSAAGQLQHQQITNNQNSNNNNSQLQQQIAVQMLPATSGSNNNNNNNGGNSNL
GRSGTQLQLASGTLTELQPVSSLLNQLRTQPQQAVTFSVANTVAALQPPPATALPSLVLP
PASVTIATTPSSGIPNTLTQPFTTIYNEAWKMATNVQVTRAQSSHESASSPSSGEKKS
Nucleotide sequence
Length: 4,032
>KH2012:KH.C12.116.v2.A.SL3-1
ATGCCGATTCACAGATTGTTATTGAAAATGATAAAGAAATTACTCCAGAAATGGCAGAGA
TAGCAAAGGCCACTGTTAAACGGAGTGCTGCAGAAAGTGATAACTCGCATTTGCCAAAAG
TTCTTAAGCAGGAAGATATTTTGGAAAACACTCAACCCAAAACGAATGAGCTTTTGCTTA
CTGTTGATCAAGCAGGGAATGCTAATGACCATGATCATGAAAAACAAATGTTGGAACTTG
TTGATGCGGCAGCTCATGCAACATCCTATACAGAGGAAGTAGTGGTACAAGAAGATGCTA
AAACTAACACTGACATTGATAATAGCTCCACTGGCATTTTAGGAGATTTATCTAACCTTG
GTAGTGATACCACAAATGGTCCGGTGCAAATTGTGGTGGAGCAAGGTGATATTAAAGGAG
ATTACCTGGACCAGGAGGACTACCAGATTGATACCAGCAGTGTAGAGCCAGAACCACAAC
AGACCAATACTGCAACGGTGGCTGCTCCACAAGGAGTAAACCCTTCTATGATGAGTAATC
TTCTCCACACAGCTGCTGCTGTTGCTGCTTCACAAAATGCAGCAGCAGCTACTGTTCAAG
TGATCCCGGGGCAAGCTGCTGGTACAATACAACTTGTTCCAGCAGCAGATGTTCAAAAAA
CTCGGGAAATGATGGCTGCTGGCTTGTCGCCACAAAGTGTTAATCAGTCCGGTGAGGAAA
GTGGGAAGCCATCTAATCAACCTGTGTTTACCTACTTGGTTACTAGTCAAGGCACACTTA
TTGCAGCACATGCCAGTGATGGTAGTGAGTTGATATCCGGTTCAAATGGAACAAAACCTA
AAAGAAAAAACACTGGCAGGGGTCGGAGATTAAGTAAAAATTCCAAGTCCATTGTAGCAA
AAGAAGAAGTTGGCAGTGAAGATGGCCATGGTGGAGGAGTTAATCAACTTGGTGGAATGT
ATGTCAACGGAAGGCCTTTACCGGAACCAATAAGGCAACGCATTGTCAATCTATCTCACC
AAGGAGTTCGTCCGTGTGACATTTCTCGTCAGCTACGTGTATCGCATGGCTGTGTCAGCA
AGATTTTAGCAAGGTATTATGAGACCGGAAGCATTCGTCCTGGGGTTATTGGAGGTAGTA
AGCCGAAAGTGGCAACACATGATGTGGTGATGCGGATAACGGAGTACAAACGTGAAAATC
CTACCATGTTTGCTTGGGAAATACGTGACAGACTTTTGGCTGATGAAGTATGTTCACAAG
AAACTGTACCAAGTGTTTCATCAATAAACAGAATTGTAAGAAGCAAAACTTCTGAATTTA
TGAAAGACAATCAGAAGCTTTCAGAACAAGCGAGTCTGCCTTCTCCATTGTTAAACATGC
AGATGATAAAAGGTGATAGAAAACGTACAAATACTGCACCAAGCACCTCCCTTAATCTTG
TAAACCAACAAGCAAACGGCAACTCGTTGCAAAATGTGGACCTTGGTGGAATGCAGATTA
TTGCTTCTGGCAATGATGGCAACTCAGGGCTGGCACAATATGTCTCATTTGCAGGGTCAG
AAGGACAAAGCAACAAACCTGTTGAACAACCTACTTTGCAAGGATCCAACTCAAACGATC
AGAATCGCATTTACAGTCTCAGCAACCTTCTTGGAATTACACCAAGCCAAGCTGCTCTTC
TAGCAAGCAACCCTGCAGCTTTCACACAAGCTGCTGCTGTGATTGGTGCAACCCCAACTT
CATCATCCAATTCGAACATTGTTGAACCCCCCAAACCATCACCTTCTCTACCAGCTGTAC
TCGCCAGCTTACCCTTGGGTCAGCAATATGAGTTGCTCAAAACTGTGGGTGGTGACCTTG
TTACCGTGCAACAGGTGGAAGAGAAAAGTCAGGAGCAGAGTAATTCCCGTCTTATATCAG
TCCAGCCAAACAAAGCAACCAACATACAACCTTCTAATCAGCAGATATTAGTCAACGCTC
AAGGACAAATTGTCACACAAACCAGTATGCTGGCCCCCCATGGTAGCCAGACACGTGTTA
TATCGCCATCCAATGTTCAACAAGGTGGGCTTTATGTGACAGCCAATGGTCAGGTGATTT
CAACTGCTGCAGCTCAAAACTTAATTGTTGCAAACCTTGACCAACCAGTGCAGTCCTCAA
CAAATTCCATAAATCTAAACCAACTGAGTGGTGTTGATGTTATGACATCATCAGTGATGA
CATCATCAGTTCGTTCGACACCCACCTTAACATCACCCAGCAACAAAACTTCCAAATCTT
CCTCCATAACTATAGGTGCAAACCAGCAAGGGTTAGTAACGCTCACCCAACAGCAAATAC
AACAGTTGGCAGCACAAGGTGTTGTAATTCAACCTGCTCCGAACCATGTTTCATACCAAC
CAGTTGAGCAACAGAACGAGAAGCCAGACAGTGAGGTGGTAATCTCAGAGAGTGATTGTG
TTACAAGAACATCTGAAGAATCTGTCGTTGTGGAAACTGTATCTAATGAAAAAGCTTCAG
AGAAAGTTTCACTTGAGCAAATATCTCACACAAATGAAGTAAATATGACACAAGAACAAC
AACAGTTACTTAAAATGCTACAGAGTGCAATCCTTGTCAAGCAAGAACCAAGTGAGGAGT
CGTCCAACATAAACCAGCTACTCATGGCAACACAACAACCTGGAACTGCCCAGTTATTAT
CGGCAGCTGCTGCACTAGGTGCAATGCAACCCTCACAAACTATTGCAGCTTCATCTGACA
CAAACACCAACTCGAACAACAACAACCAACATCTTGTATCTTCCAACCCTCAAGTTCTTA
CTGCAGCTCAATTACAACAACTTACTTCTAACTTGCAACAACAACAACAACATCAACAGC
AACAACAAGGAATTGTCCAGATTCTGTCAGCTGCTGGCCAACTACAACATCAACAAATAA
CCAACAACCAGAACAGCAACAATAACAACAGTCAACTACAACAGCAAATAGCGGTGCAAA
TGCTTCCAGCAACTAGCGGCAGTAACAACAACAATAATAACAATGGTGGCAATTCAAATC
TTGGAAGGTCTGGTACACAACTCCAACTTGCATCGGGAACATTAACTGAGCTTCAACCTG
TCAGTTCTCTTCTTAACCAACTCCGCACACAACCCCAACAAGCTGTTACCTTTTCTGTTG
CAAATACTGTTGCTGCACTTCAACCACCACCAGCTACAGCACTTCCATCACTTGTTCTGC
CACCTGCCAGTGTAACTATAGCCACCACCCCATCTAGTGGTATACCCAACACTCTTACAC
AACCGTTCACAACAATATACAATGAAGCATGGAAGATGGCTACCAATGTGCAAGTTACAA
GAGCTCAATCATCACATGAGAGTGCTTCCTCTCCTTCAAGTGGTGAAAAAAAGAGCTAAG
ACACTAAGCTGTTCAACATCTAAGTGCCTTTTACCTGATGTAAATACCAGTGGCACATCT
ATAATACAGGTGTATTTATGGAACCAGTTAGGGCAGTCTTCAAAATAACAAAATTTGTTT
TGTTTTCTGACATTTGAAATTTGTTAACTCTGGAGTTTACCACTCCTAATGCCAAAGAAG
TCCATCTTGTGGTACGAGCCCGTCTTATTTTTAGTTTATAAATCATCATTTCTCCATAAA
GAACGTTAGTAAACAGTTATTTTTTTAAAGAAAACCATCATGCTGCTTGTACAGTTTAGT
AAAGATAGTTGATTTTAAATTTTATTTTAAATCAACAAAGAAAAACATGCCTAACTATCT
GCCGTCTTGTTAAAGTTCTTTAACCTTTCTGTTAAAAATATATAAATTTTTTATTTAAGA
CCCGCTGCCATGGGGGTTTTGAGTTTTGCACTACCCATACATGGGGGTCTATTCTTCACC
CGCTGCAACTACTATGGCCTGTCATTTAGCTTTTGTTTGTTTTTGTAAATCCTGCCATTT
TATTTTCCTTGTTCTGATTCTTGTTTTTTTTTTTGTATTTAGAAATTGTAAAGTACAAAC
AAAACACTGACA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[302-377] 2.0E-38 - T[378-442] 1.4E-32 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[309-435] 60.013 |
| SMART |
Paired_dom (IPR001523) - T[309-433] 1.3E-88 |
| CDD |
Paired_dom (IPR001523) - T[311-435] 1.14175E-72 |
| Pfam |
Paired_dom (IPR001523) - T[311-433] 1.9E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[312-433] 9.26E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[313-328] 5.1E-39 - T[331-349] 5.1E-39 - T[351-368] 5.1E-39 - T[369-386] 5.1E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[343-359] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 80.916 % | 237 | 3.63E-69 |
| PAX2_HUMAN | 81.25 % | 233 | 9.74E-68 |
| PAX8_HUMAN | 82.031 % | 235 | 8.19E-68 |