- Transcript 'KH2012:KH.S605.3.v1....' >
- Transcript 'KH2012:KH.C12.116.v2...' >
- Clone 'cima824862' >
- Region 'REG00001534' >
- Transcript 'KH2012:KH.C12.14.v1....'
Transcript Model
Transcript Id
KH2012:KH.C12.14.v1.A.SL1-1
Possible name(s)
CDH18; CDH7; CDH8
Gene model
Location
KhC12 [2,382,715 / 2,393,168]
Amino acid sequence
Length: 926
>KH.C12.14.v1.A.SL1-1
NCENIKYNMETIALLLMLATLGNAITTIPVHVPQAAQTGDVILRLPKVFRNLDFFEIEDG
VMLKITVATYGYEIKLRVPGNAVQSQNVLLKYNSGENGEYKLLKLKLRSETPMLRSTKTE
GIVEHRGLFGKLMSYSHDVTNQDATSHGRSRQRRWVFNSYSVKENRDPDQLIAKIRSSYD
NFTGTVVYSISGRGADSLFQIEPLTGRLFVKQKLDREMQSSYKLNVSAHDSMGNPLDPSS
EITIDVLDENDNAPEFSAGKLHARVKERSPSGTKVTDVIAHDADDPTQPYGQIRYSVLPS
PGDAATKFIIHHERGTVSTITSNLDREESDTYELVIQARDDPNARLSFSSSTTLTISVID
VNDNPPVFINEPYTPRVPEDSKIGSEVVRLSTTDADEAENAQSVYIIEDGGDSAYFSIET
LDHQGVLKVKKRLDYETTPNHQYHVKVRARNTHLDPSLAYLGALDDVTDVVITVTDVNEP
PEFTEVNFEFLVREDAIRGFPIRAVTASDPEGDIFSYFMKDESKKFAIDPISGMISVAGK
LDREDKDTYDVTVYAGSPGALEQGSSARVTISISDVNDNPPRPLGGDKVEVVLCDNRHDK
GQILYPSIKFSDPDSESNGAPFKFYSTDDDNYKHFEIINNNDGSANLRTVHKGYSSSIRE
YKLPFIVEDNGRPKLNASYTITVRACQCTDDGEELCDVIALTGALPFEMLLVILAVVVLL
LVFVVVLITVRRRRHNRAELLLKASISSSEDDVRENIITYNEEGGGEEDTAAFDLSALQR
DYCSSSSGSQVKHRLDFSSPPSTKVSTVPPYVPNLNGVSPDIRDFIIDRKSAEDQDDAKL
AFDSLQIYAYEGEGSDAGSLSSLASGSDDSEQNYDYLRDWGPRFDRLANIYGSGRPQLSD
GETRTPSPANSHLSSRGTMGRRKTAL
Nucleotide sequence
Length: 3,140
>KH2012:KH.C12.14.v1.A.SL1-1
GGAAGTAAAAGTTAATTACCAGTTGTGTATAAGAGTGTGAAACTAAAACTGCGAAAACAT
AAAGTACAACATGGAGACGATCGCTTTGCTGCTGATGCTTGCAACTCTTGGAAATGCAAT
AACTACGATACCTGTACATGTACCACAAGCTGCACAAACTGGAGATGTAATACTAAGACT
GCCAAAGGTCTTCAGAAATTTGGACTTTTTTGAGATCGAAGATGGAGTTATGCTAAAGAT
TACAGTAGCGACTTATGGATACGAAATCAAGCTGAGAGTACCCGGAAACGCCGTTCAGAG
TCAAAATGTTCTGTTGAAATACAACAGCGGCGAAAATGGTGAATACAAACTGCTGAAATT
AAAGCTTAGATCTGAAACGCCAATGTTGAGATCCACGAAGACTGAAGGCATAGTAGAACA
CCGTGGACTTTTTGGAAAACTGATGTCATACTCACATGACGTCACAAATCAAGACGCGAC
GTCACACGGTCGAAGCCGACAAAGGCGCTGGGTGTTTAATTCATATTCGGTCAAAGAAAA
TAGGGATCCAGACCAACTAATCGCAAAGATCCGGTCTTCATACGATAACTTCACTGGTAC
AGTGGTGTACAGCATATCGGGCCGTGGTGCTGATTCCTTGTTTCAAATTGAACCATTGAC
TGGACGTTTATTCGTCAAACAAAAGCTGGATAGAGAGATGCAAAGTTCATACAAACTTAA
CGTATCCGCACACGACAGTATGGGAAACCCTCTTGATCCGTCAAGCGAGATAACAATTGA
CGTTTTAGACGAAAACGACAACGCTCCCGAGTTTTCGGCGGGAAAGCTTCATGCTCGTGT
CAAAGAACGATCGCCGTCTGGAACCAAGGTTACTGACGTCATAGCACATGACGCGGACGA
CCCGACGCAACCTTACGGTCAGATCAGATACTCGGTTCTCCCGTCGCCAGGTGACGCTGC
CACCAAGTTTATTATCCACCACGAGAGGGGGACAGTGAGCACTATTACGTCAAACTTGGA
CAGAGAGGAGAGCGACACCTATGAGCTGGTTATTCAGGCAAGAGACGACCCGAACGCTCG
ACTAAGTTTTAGTTCCAGCACTACCCTTACTATATCTGTGATTGATGTGAATGATAATCC
ACCAGTGTTTATCAATGAACCTTATACACCTCGTGTCCCAGAAGACAGCAAAATCGGATC
CGAAGTTGTCCGACTCTCCACCACCGATGCTGACGAAGCTGAAAATGCTCAAAGTGTTTA
CATCATTGAGGACGGTGGTGACTCAGCTTATTTCAGCATCGAAACACTCGATCACCAGGG
AGTCTTAAAAGTTAAAAAGAGGTTGGATTATGAGACCACCCCTAACCATCAATACCACGT
TAAAGTAAGAGCTAGAAACACCCATCTTGACCCCTCTCTTGCGTACCTTGGTGCATTGGA
TGACGTCACTGATGTCGTCATCACCGTCACTGACGTCAACGAACCGCCAGAGTTTACGGA
AGTCAACTTCGAATTTTTAGTTCGAGAGGACGCTATTAGAGGATTCCCCATTCGAGCCGT
GACCGCCAGTGACCCCGAGGGCGACATTTTCTCTTATTTCATGAAAGACGAGAGCAAAAA
ATTCGCGATCGACCCCATTTCCGGAATGATTTCCGTGGCTGGGAAGCTCGATAGGGAAGA
CAAAGACACTTATGACGTCACAGTGTACGCGGGGTCACCGGGGGCGCTAGAGCAAGGCAG
TTCCGCTCGAGTGACGATCAGTATTAGTGACGTCAACGACAATCCACCACGACCGCTCGG
AGGCGATAAAGTGGAGGTCGTACTGTGTGACAATCGGCACGACAAAGGCCAGATCCTTTA
CCCTAGCATTAAGTTCTCTGACCCCGATTCGGAAAGCAACGGAGCCCCGTTTAAGTTCTA
CAGCACCGATGACGATAATTATAAACACTTCGAAATTATAAACAACAACGACGGCAGCGC
TAACCTGCGCACAGTACATAAAGGTTACTCGTCTTCCATTCGAGAATATAAACTTCCCTT
CATAGTTGAAGATAACGGAAGACCGAAGTTGAACGCGTCATATACGATCACAGTTCGAGC
CTGTCAGTGCACAGACGATGGAGAAGAGCTTTGTGACGTCATAGCGTTAACTGGTGCGCT
GCCCTTTGAGATGTTGCTGGTTATTCTGGCCGTTGTTGTACTTTTACTAGTTTTCGTTGT
CGTTCTCATAACGGTTCGACGCCGTCGTCACAATCGCGCGGAGTTATTACTCAAAGCCAG
CATCAGTTCTAGTGAAGATGACGTGAGGGAGAACATCATAACTTACAATGAGGAGGGAGG
GGGAGAAGAAGATACAGCGGCATTTGACTTGAGTGCGCTGCAACGAGACTACTGCAGCAG
CTCTTCCGGGTCTCAGGTGAAACACAGACTCGATTTCTCCAGTCCTCCTTCGACCAAAGT
GAGCACGGTCCCACCTTATGTCCCCAATCTTAACGGTGTGTCCCCTGACATACGAGATTT
CATTATTGATAGGAAATCAGCCGAGGACCAAGACGATGCAAAACTAGCATTCGATTCACT
TCAGATATACGCTTACGAAGGGGAAGGGTCGGACGCTGGTTCACTGAGCAGTTTAGCAAG
CGGTTCTGACGACTCTGAGCAAAACTACGACTACCTGCGTGACTGGGGACCAAGATTTGA
CCGATTGGCAAACATATACGGATCGGGGAGGCCGCAGTTGTCTGACGGGGAAACACGCAC
TCCCTCCCCGGCAAACTCTCACCTTAGCAGCCGAGGTACGATGGGACGTCGAAAAACAGC
GCTGTAAACTTCGCTAAGGATCTTATTACTATTAAGAAGCGTTGACGTAGCTGCCCGAGT
GCAAAAAGCCAGTAGAACGATGTTTACACAGCATTAAAGAGACATTCTTCACAAAACTGT
TTCCAGTGCTTTTACCAACAAAGACATTCTTCAGTCTCATCCAGAAGGCAATTTCCGTTC
TATTTTTTACTGTATGCGTAGCGTAGTCGTTTCTATTTTATTTCATGAGTGTTTTTTTCA
CGGCCGTATCGCTTCTACATTGGTTGCCAATAACTGTTCGTTTTTTCTACTTCTTTTCGC
CAATACATATTCCAATACTA
| Pfam |
Cadherin (IPR002126) - T[159-247] 3.6E-13 - T[262-358] 9.2E-16 - T[374-474] 6.0E-14 - T[489-573] 1.7E-9 |
| SMART |
Cadherin (IPR002126) - T[176-254] 4.2E-16 - T[278-366] 2.6E-22 - T[390-482] 1.1E-13 - T[505-581] 8.5E-18 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[181-256] 1.71E-15 - T[250-360] 2.86E-21 - T[361-476] 6.14E-20 - T[472-583] 1.71E-20 - T[605-688] 1.43E-7 |
| PRINTS |
Cadherin (IPR002126) - T[197-216] 2.2E-35 - T[256-285] 2.2E-35 - T[331-343] 2.2E-35 - T[347-366] 2.2E-35 - T[366-379] 2.2E-35 - T[423-449] 2.2E-35 - T[565-582] 2.2E-35 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[356-366] . - T[571-581] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[745-893] 6.5E-47 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[801-896] 7.3E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH7_HUMAN | 38.144 % | 399 | 5.68E-126 |
| CAD18_HUMAN | 37.286 % | 422 | 7.32E-135 |
| CADH8_HUMAN | 39.018 % | 400 | 3.11E-126 |