- Clone 'cien203265' >
- Transcript 'KH2012:KH.L171.13.v3...' >
- Transcript 'KH2012:KH.C12.152.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.152.v1.A.SL1-1
Possible name(s)
PAX6; RAX; RAX2
Gene model
Location
KhC12 [1,334,401 / 1,340,968]
Amino acid sequence
Length: 827
>KH.C12.152.v1.A.SL1-1
KKIRRVFSLKMSTDTSKGEEFAENAKTPGTNLNSTIESRPNEDIKTKQENISKLPVQMSD
QENRPVPKSVRSPEDMPSFPNYGSLEYFPPPIKEALRSYLEKMYSSVYTAQDETSIPSGL
SHDVAPHPRYGLNGMPGHAGYGVGLPFDLSHYYPPILRSGDRQQFGAQRLDVHHFARNNP
DEKVTKSVSKPVKQETPEDVPKFDAPASPTRIVGATTPSEEMGQSSIITPIASEPTEHPT
RSTSHNYVSTDTVSPFTLAASQGSLHAFKEDSYLPFAFSMEKKNKDFELPPTKSPEKPKE
QIKTATKRPSQDVIGNDSKKIAKEVLSFSPPKHASVSPPKSLSALPQRPLENDLLMAMMM
SQQSQLPSTATNDASAIMAQLYSTCSEVAKDNYFNWMLPSAMLMLQQKRAAMRPSTPEEK
YLDNGPSDDDDDEELLLDPQHPKDGIYNEEVNNIIGNLKKDSAGNKNPGQGTNHSSMLKS
EFFGSSFDSHPALESFRSDADAQKRTEDMLEAYRKSFAEHRPEQQEKGIWGEETNRSYRQ
PSNEDQSVSPPSISPTQCSDSDLKKKLRRNRTTFTTFQLHELERAFERSHYPDVYSREEL
AGKINLPEVRVQVWFQNRRAKWRRQEKIESGNHEREIRNYNQATALSATVSTKPNNVQRN
NPSHQLDQLIASQSSPARHLLPTPSSSFGHTLAASSQASSAFSIPFLSGMLTGGRDPVSS
LDSSKTTSPSSAAKLSSDMALYSRYASQMGALQQFSTPPFHLPLHLLGASQARDFPRPNT
ANEKESNQSNPDRSPSEKSFKRETAEEFRFSPKFTETTEKVPVLSQQ
Nucleotide sequence
Length: 2,650
>KH2012:KH.C12.152.v1.A.SL1-1
AAAAAAATTAGACGGGTATTTTCCTTGAAGATGAGTACAGACACATCTAAAGGTGAAGAG
TTTGCCGAAAATGCGAAAACGCCTGGCACAAATTTAAATTCAACAATAGAAAGTAGACCA
AACGAAGATATCAAAACAAAACAAGAAAACATTTCAAAATTACCAGTTCAAATGAGCGAC
CAGGAAAATAGACCTGTTCCAAAATCAGTAAGAAGTCCTGAAGATATGCCTAGTTTTCCT
AACTACGGTTCGCTAGAGTATTTTCCGCCCCCAATAAAAGAAGCCTTGAGAAGTTACTTA
GAAAAAATGTACTCGTCTGTATATACTGCACAAGACGAGACATCTATTCCTTCGGGGCTA
TCCCACGACGTAGCACCTCACCCACGTTACGGCCTAAATGGCATGCCAGGCCATGCGGGT
TACGGCGTTGGTTTACCGTTTGATCTGTCGCATTATTACCCCCCTATTCTACGAAGTGGT
GATCGTCAACAATTTGGGGCGCAGCGCTTGGATGTCCACCATTTTGCAAGAAACAATCCC
GACGAAAAAGTTACAAAAAGTGTTTCTAAGCCTGTTAAACAAGAAACACCCGAAGATGTG
CCTAAATTTGATGCTCCGGCTTCACCAACACGGATAGTGGGAGCAACGACACCATCTGAA
GAAATGGGGCAATCGTCGATTATAACTCCCATTGCTTCTGAACCTACAGAACATCCGACT
AGATCTACAAGCCACAACTATGTAAGCACTGATACTGTGTCACCATTCACACTCGCAGCA
AGCCAAGGAAGTCTACATGCTTTCAAAGAAGATTCTTATCTCCCATTTGCGTTTTCAATG
GAGAAGAAAAACAAAGATTTTGAATTGCCACCAACAAAGTCGCCCGAGAAACCAAAGGAA
CAAATAAAAACTGCAACTAAACGACCATCTCAAGACGTGATTGGAAACGACAGTAAGAAA
ATAGCAAAAGAGGTGCTATCGTTTTCGCCGCCAAAGCATGCGAGTGTAAGTCCCCCTAAA
TCACTCAGTGCTTTGCCACAAAGACCTTTAGAAAACGACTTGCTCATGGCAATGATGATG
AGTCAACAAAGCCAACTCCCGTCCACGGCTACCAACGATGCGTCTGCAATCATGGCTCAA
TTGTACTCTACATGTTCCGAGGTTGCGAAAGACAATTACTTCAATTGGATGCTGCCTTCC
GCAATGCTGATGCTACAGCAGAAAAGAGCAGCAATGAGACCGAGTACTCCGGAGGAAAAA
TATCTTGATAACGGTCCCAGTGACGATGACGACGACGAAGAGTTACTGCTTGATCCGCAA
CATCCAAAAGATGGCATCTACAATGAAGAAGTCAACAACATTATCGGCAATCTTAAAAAA
GACTCCGCGGGTAACAAAAATCCAGGGCAAGGGACGAATCATTCATCTATGTTGAAAAGT
GAGTTCTTCGGAAGCTCTTTCGACTCCCATCCGGCACTTGAAAGCTTCCGATCTGATGCG
GATGCACAGAAGAGGACGGAAGACATGTTGGAAGCTTACCGTAAAAGTTTTGCGGAACAC
CGACCAGAACAGCAAGAAAAGGGAATTTGGGGTGAGGAAACCAACCGTTCATATCGCCAA
CCCTCGAACGAAGATCAAAGCGTTTCGCCTCCGAGTATTTCACCAACTCAATGTTCTGAC
TCTGACCTGAAGAAAAAACTTCGTCGCAACCGCACAACGTTTACCACGTTCCAACTACAT
GAGTTGGAGCGAGCGTTTGAACGATCTCACTACCCGGATGTTTACAGCAGAGAAGAGTTG
GCAGGAAAAATTAATCTACCAGAAGTTCGGGTTCAGGTTTGGTTTCAAAACCGGCGGGCA
AAATGGCGACGTCAAGAAAAGATTGAATCTGGAAACCATGAACGGGAAATAAGGAATTAT
AACCAAGCCACAGCATTGAGTGCGACTGTATCTACTAAGCCCAACAACGTTCAACGCAAT
AATCCTTCACACCAACTCGATCAGCTTATCGCAAGTCAATCATCTCCAGCGCGCCACCTA
CTGCCGACACCTTCTTCTAGTTTCGGCCACACATTGGCAGCATCGAGCCAAGCGTCGAGT
GCGTTTTCAATTCCATTTTTATCCGGAATGCTAACGGGCGGACGGGATCCAGTTTCGTCA
TTAGATTCTAGTAAAACGACTTCTCCATCCTCGGCCGCTAAATTATCCAGCGACATGGCT
CTGTACAGTAGGTATGCAAGCCAAATGGGGGCGCTACAGCAGTTTTCTACTCCCCCTTTT
CATTTGCCCTTGCACCTTCTGGGGGCTAGTCAGGCTAGGGACTTTCCTCGACCCAATACG
GCAAATGAAAAAGAGAGCAACCAATCGAATCCAGATCGTAGTCCGTCCGAAAAATCCTTC
AAAAGAGAAACAGCTGAAGAATTTCGATTCTCTCCGAAGTTTACCGAAACAACCGAAAAA
GTTCCAGTTTTGAGTCAGCAGTAAACAAAACCCTGAATTTAATGTCGTAGTTTGTTGTCG
CTTTTTTCTTTATCGGGCATTTAATTATCATTGTGTGATACGCAGTATTAACTTCGTGCT
TATATAGTTATGTTGTGCCGATGCCATCGCATTGTGAGTTATCGTGTAAAATACAATAGT
TCATTTGTAA
| PANTHER |
Rx (IPR032967) - T[48-48] 1.2E-78 - T[165-818] 1.2E-78 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[559-630] 8.55E-27 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[565-625] 20.941 |
| SMART |
Homeobox_dom (IPR001356) - T[567-629] 1.9E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[568-624] 1.4E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[568-626] 1.52817E-23 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[600-623] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX6_HUMAN | 56.667 % | 112 | 2.92E-26 |
| RAX2_HUMAN | 74.699 % | 133 | 7.6E-36 |
| RX_HUMAN | 92.424 % | 138 | 8.51E-36 |