- Molecular Tool 'FGF9/16/20-MO (Lemaire lab)' >
- Transcript 'KH2012:KH.C12.290.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.290.v1.A.SL2-1
Possible name(s)
PSMC1; PSMC4
Gene model
Location
KhC12 [3,230,310 / 3,234,863]
Amino acid sequence
Length: 425
>KH.C12.290.v1.A.SL2-1
VGLKAAFAKMEELGIATKPAIVTPESSRPGTVQSMLSTTEIDKIEDLYTKYKKLQKQLEF
LGVQEEYIKDEMKNLRKEYLHAQEEVKRIQSIPVVIGQFLEAVDQNNAIVLSTTGSNYYV
RILSTIDRELLKPNSSVALHKHSNALVDVLPPEADSSITMLSADEKPDVSYSDIGGMDIQ
KQEVKEAVELPLTHFELYKQIGIDPPRGVLMFGPPGCGKTMLAKAVAHHTTASFIRVVGS
EFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELL
NQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITGKMN
LSDEVDLEDYVARPDKITGADINAICQEAGMLAVRENRYVVLSKDFEKAYKTQMKKDEQE
MEFYK
Nucleotide sequence
Length: 1,470
>KH2012:KH.C12.290.v1.A.SL2-1
AAAGAATTGTGAACATTTTGTTATTATTATAAGTTGGTTTAAAAGCTGCTTTTGCGAAAA
TGGAGGAATTAGGAATAGCAACAAAACCTGCTATCGTCACGCCAGAATCATCCCGTCCTG
GCACTGTTCAATCTATGCTTAGCACGACTGAAATAGACAAGATAGAAGATCTTTATACGA
AATACAAGAAGCTGCAAAAACAACTGGAGTTTCTCGGAGTACAAGAAGAATATATTAAAG
ATGAAATGAAGAACTTGAGGAAGGAATATTTGCATGCTCAGGAAGAAGTGAAACGCATAC
AGAGTATTCCTGTTGTGATTGGTCAATTCTTGGAAGCAGTGGACCAGAACAATGCAATTG
TTCTTTCAACAACCGGATCAAATTATTATGTCCGAATATTAAGCACAATTGATAGAGAAC
TTTTGAAACCGAACTCTTCAGTGGCTCTTCACAAACATAGTAACGCACTTGTGGATGTCC
TCCCTCCTGAAGCAGACAGCAGTATCACTATGCTTTCTGCAGATGAGAAACCTGATGTGT
CTTATTCTGATATTGGTGGAATGGACATCCAGAAACAAGAAGTTAAAGAAGCTGTTGAAC
TTCCGTTGACACATTTCGAGCTTTATAAACAGATTGGAATTGACCCTCCTCGTGGAGTCT
TGATGTTCGGACCTCCTGGTTGTGGAAAGACAATGTTGGCAAAAGCTGTCGCCCACCATA
CCACTGCTTCATTTATTCGAGTCGTTGGATCGGAATTCGTGCAGAAATATCTGGGTGAAG
GACCAAGGATGGTACGGGATGTGTTCAGACTTGCCAAAGAGAACTCCCCTGCCATTATCT
TCATTGATGAAATAGATGCGATCGCCACGAAGCGTTTTGACGCTCAAACTGGTGCAGATC
GTGAGGTGCAACGTATCTTGCTGGAACTACTTAACCAGATGGATGGCTTCGATCAAACTG
TTAATGTTAAGGTTATTATGGCCACCAACCGAGCTGACACGCTCGATCCTGCTCTGCTGC
GTCCTGGTCGTCTGGATCGGAAGATTGAATTCCCGCTTCCGGATCGGAGACAGAAGCGTC
TCGTCTTCTCCACCATTACTGGGAAGATGAACCTCAGCGATGAAGTGGATTTGGAAGATT
ATGTTGCCAGACCTGACAAAATCACTGGTGCTGATATAAATGCAATTTGCCAAGAAGCAG
GCATGCTTGCAGTTCGTGAAAACCGGTATGTCGTTCTTTCCAAAGATTTCGAGAAGGCTT
ACAAAACACAGATGAAGAAAGACGAGCAAGAAATGGAATTTTACAAATGATTGTTTCGTG
ATAAATCGATATTGTTTTCGTGGTGTTACGCTATAAATGGTGATATTACTGTTTTCGAGT
TTCAGTGCAAAGAGCATTTTTGCTGCTATGAAATAAGACTTAGTCATTTTGTCACACAGT
TTGAAGTTCAAATAAATTATCACATTGCAA
| PANTHER |
PSMC4 (IPR035256) - T[33-425] 2.6E-236 |
| TIGRFAM |
26S_Psome_P45-like (IPR005937) - T[52-410] 8.3E-135 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[167-420] 3.21E-66 |
| SMART |
AAA+_ATPase (IPR003593) - T[205-344] 5.8E-24 |
| Pfam |
ATPase_AAA_core (IPR003959) - T[209-342] 4.5E-43 |
| ProSitePatterns |
ATPase_AAA_CS (IPR003960) - T[312-330] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRS8_HUMAN | 46.828 % | 319 | 5.0E-106 |
| PRS4_HUMAN | 50.269 % | 403 | 1.14E-138 |
| PRS6B_HUMAN | 86.158 % | 737 | 0 |