- Clone 'cilv033l17' >
- Transcript 'KH2012:KH.C12.321.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.321.v1.A.ND1-1
Possible name(s)
CD53; TSPAN4; TSPAN9
Gene model
Location
KhC12 [1,363,342 / 1,367,110]
Amino acid sequence
Length: 226
>KH.C12.321.v1.A.ND1-1
KCQVNNKMKSTALNVCKWLMFTFNLIITICGAVLLAFGIWAYANGNSFRKLVSANLYLSN
SMALMMAVGSILIIAGLFGCIGSLMENRCMLGTFFTIVLILFVIEVVSIILLFVYWPKAE
TLALNSIHHYDTDKKIPWDYLQRSMKCCGYTSYTDWGSEIPSSCCFHNQTCTVGSKDLYV
KGCRSSIQHYIFIIAIFGVGALLFELLAIVFTCVLYQSIGDYQPMA
Nucleotide sequence
Length: 1,577
>KH2012:KH.C12.321.v1.A.ND1-1
AAAGATTATATTTTAAAATCTAGAATTAAAGGTGTTTGAAAGTGTCAAGTAAATAACAAA
ATGAAATCGACAGCATTGAATGTTTGCAAGTGGCTGATGTTTACCTTCAACCTTATAATT
ACTATTTGCGGAGCTGTTTTGCTTGCTTTTGGTATATGGGCGTATGCAAACGGAAACAGT
TTCCGAAAGCTTGTTTCCGCTAATCTTTATCTTTCCAATTCCATGGCACTTATGATGGCG
GTTGGTTCGATATTAATAATAGCTGGACTCTTCGGCTGTATTGGGTCACTTATGGAAAAC
AGATGCATGCTGGGGACGTTTTTCACTATCGTCTTGATTTTGTTTGTCATCGAAGTAGTT
TCCATCATACTACTGTTCGTGTATTGGCCCAAAGCAGAAACACTGGCATTGAACAGCATT
CATCATTACGATACAGACAAGAAAATACCATGGGACTATTTACAAAGATCGATGAAATGT
TGCGGTTACACCAGTTATACAGACTGGGGTTCAGAAATTCCTTCAAGTTGTTGCTTCCAC
AATCAGACATGTACAGTCGGGTCCAAAGACCTGTATGTAAAAGGGTGCAGATCATCTATT
CAGCATTACATATTCATTATTGCAATTTTTGGTGTCGGTGCTCTCTTGTTTGAGCTGTTG
GCTATCGTCTTTACCTGTGTTCTGTATCAATCTATTGGAGATTATCAGCCAATGGCGTGA
AGCTGTTGATTATCAGCCAATGGCGTGAAGCTGTTTTGTTGTCTGAACTTCGTTTGTAAA
TATTTAATTGTAAAGAAAAATAATCAGTTATTTGACAATTTTAAAAGTTGGTTATCTGGA
ACAAAATCAACAATATTTTGTTTCTGAATCACTTTTTTATCCTTGCTCTTAAAGCAAAAT
ATACTTTACAAATGAATCCCTAATGAGCCTATAACGCCTATGCTTTTCACTGTATATGTA
AATTATGCCTGTTTCTACTATACGAGGTCTTTAATTTTATCTAGTTGTCGCTCTTACTTT
TACCGTGTGTTAATTAATTTAAAAAGTGTTTCATTTCCGGCACTTTTAGGCGACGCTGTG
CTAAAGTGGTTAACGCAATTGCCTGTTCCCCCAACGTACTGGTTTGAGGCTTGATGCTGC
TGATACCATTTTGCGTGTAAGTGTCTTTGGGCAAGACACTTGACGGCAATTGCAAAATTA
CATACTTCGTCGTAACTTGTTAGCGTACATGAAGTGTATAAAACAGAACAGAAAAACAGA
AGAAATTCCGTGTTATAATAACTGTCGTTTCCTGTGCCTAACGAGATAAAAGTCGGATTT
ATTCAATAACAAATGTACGAAGCTTGAGGCTGCTATGATTAATGTTTTGTTGCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTAATTTATAGTG
AGTTACTGTATATATGAGTTTTATTGTGTTATATATTCGATAATTATTTCGTGGTGTAAA
TGCTTTTAAAATGTATACAGCATCAAAAAGTCACATTCAATGTATTGCACTGCTGATAAA
ACGTAGCGACAAATAAA
| PIRSF |
Tetraspanin (IPR000301) - T[7-226] 7.3E-45 |
| Pfam |
Tetraspanin/Peripherin (IPR018499) - T[17-217] 4.3E-42 |
| PRINTS |
Tetraspanin (IPR000301) - T[18-41] 1.5E-35 - T[58-84] 1.5E-35 - T[85-113] 1.5E-35 - T[193-219] 1.5E-35 |
| ProSitePatterns |
Tetraspanin_CS (IPR018503) - T[69-91] . |
| Gene3D |
Tetraspanin_EC2_sf (IPR008952) - T[118-191] 4.6E-13 |
| SUPERFAMILY |
Tetraspanin_EC2_sf (IPR008952) - T[131-191] 4.84E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSN9_HUMAN | 31.878 % | 106 | 3.23E-28 |
| CD53_HUMAN | 35.135 % | 101 | 2.26E-26 |
| TSN4_HUMAN | 30.702 % | 88.6 | 2.13E-21 |