- Clone 'cieg053n18' >
- Region 'REG00000885' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C12.403.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.403.v1.A.SL2-1
Possible name(s)
LIN28A; LIN28B; YBX2
Gene model
Location
KhC12 [827,022 / 829,420]
Amino acid sequence
Length: 200
>KH.C12.403.v1.A.SL2-1
NLHPIKMATGEAKPGSSTKQEISEEKVEDLIEAFGNCKWFNSKQGYGFITPDTSSQEKTD
VFVHQSSIDMEGFRSLQEGDRVKFWYKPSKKGLEAVKVVGPGGEKLVGAERTKKSRPSDR
RSRCYNCDEEGHHAKQCLLPPWPKKCFNCKSFDHLIADCPNKHDTSSTEESNGSSSHTPC
KEEETSTEGVERKETSPQTP
Nucleotide sequence
Length: 974
>KH2012:KH.C12.403.v1.A.SL2-1
CGGTTCGAGTATAAAAGAATGAAAAACTGAACATTGAATAAAATCTTCACCCGATAAAGA
TGGCAACAGGTGAAGCAAAACCAGGAAGTTCAACAAAACAAGAAATATCTGAAGAAAAAG
TTGAAGATTTGATTGAAGCCTTTGGAAATTGTAAATGGTTTAACTCAAAGCAAGGGTACG
GGTTCATTACGCCTGACACAAGTTCGCAGGAAAAAACTGATGTGTTTGTACACCAGTCGA
GCATCGACATGGAGGGTTTCCGGAGCTTGCAGGAAGGGGACCGGGTGAAGTTTTGGTACA
AACCCTCCAAGAAGGGGCTGGAGGCGGTGAAGGTTGTGGGGCCTGGGGGTGAAAAATTAG
TCGGGGCAGAACGAACGAAAAAGTCCAGACCCTCAGACAGAAGGTCCCGATGTTACAACT
GTGATGAAGAAGGCCACCACGCCAAGCAATGTTTGTTACCACCGTGGCCTAAAAAGTGTT
TTAACTGCAAATCATTTGATCATCTCATAGCAGATTGCCCAAATAAGCATGATACGTCGA
GTACAGAGGAAAGCAACGGATCATCTTCACATACACCATGTAAAGAGGAGGAAACAAGCA
CAGAGGGAGTAGAGAGGAAAGAAACATCTCCGCAAACACCATGATACCTCATATTCACAT
TACCTCAACATTATTTGAACCGTAAGCTACCTCATAGTTTAAAACAGGTAGCTGAATTCG
TCAAGCATTATCTACCTCGAACTCTTTTGTACGTCTCTTCAATTGAAGGTAGAAAGATAT
TCAATCATCCATCATATGCAATGCCTGATGCTTGTCATTCGAAGCATGCCATGTTATAAA
GCTCAGGTTTCATATGTTTGTTACAGTATTGTGGATCGTTCATTCAGTTTAATAAATTTT
AATCAAACTTTGCCTCGTAGTTTGTACTCGTGCAAGTGTTTTGTGAAATATAATCAAGAA
TCTCATTAAAGTTT
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[33-100] 1.18E-17 |
| SMART |
CSD (IPR011129) - T[34-101] 2.6E-21 |
| CDD |
CSP_DNA-bd (IPR002059) - T[35-100] 4.29769E-26 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[35-100] 1.6E-22 |
| PRINTS |
CSP_DNA-bd (IPR002059) - T[35-50] 7.2E-8 - T[74-92] 7.2E-8 |
| SUPERFAMILY |
Znf_CCHC_sf (IPR036875) - T[117-163] 1.55E-11 |
| Pfam |
Znf_CCHC (IPR001878) - T[123-137] 3.1E-4 - T[144-161] 3.6E-4 |
| SMART |
Znf_CCHC (IPR001878) - T[123-139] 0.027 - T[145-161] 0.0018 |
| ProSiteProfiles |
Znf_CCHC (IPR001878) - T[123-137] 9.834 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LN28B_HUMAN | 43.258 % | 146 | 4.95E-44 |
| LN28A_HUMAN | 47.887 % | 144 | 1.54E-43 |