- Transcript 'Cisavi.CG.ENS81.R48....' >
- Clone 'AHC0AAA188YO20' >
- Clone 'cicl031g22' >
- Transcript 'KH2012:KH.C12.421.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.421.v1.A.ND1-1
Possible name(s)
ASCC3; HFM1; SNRNP200
Gene model
Location
KhC12 [430,644 / 454,333]
Amino acid sequence
Length: 2,058
>KH.C12.421.v1.A.ND1-1
NMSDFPSFTATLRSFGSISKQTGQLNLNKRSVHGECDVWKELQAIVQVKCKEKRKLNELK
ASLRELLELASDIVGGEEDIKSKHLAATQVFFILYKLDEVDTKTLQEVRHTIGRVDLKSL
NKHHQVVKTILDLTHDGVREQIEKLENDQSSNEFGRKIKFSSDLPVMEISYDFDRKDRTN
GVDIAETFRQKHKDLTRPNSVAQLKTENRVSANTGLPWLRRQMELKFQSTQLVEPTLAVL
KSSQTNEQIQNELCELLGFEHLDLISELLQRRESLVQDEKHLAAINQHRGNLSFTDAEKQ
VAKAIRREEKKAKKLLKSMIQQNDEDDSDFLPRLMALPEGVDVKNTKRFEEVSIPATIGY
AGQPWPLVKITELDEIGQMAFNGIKKLNTIQSRVFETAYRTNENLLICAPTGAGKTNVAM
LSIVKEIIQNVESGVIQLDKFKIVYVAPMKALAAEMAENFGRRLSPLGVSVRELTGDMQL
TKKEIQSTQMLITTPEKWDVVTRKSTSDVALARLVRLLIIDEVHLLHDERGPVLETLVAR
TLRQVETQQTMIRIVGLSATLPNYIDVARFLRVNPLYFLIDVHIYIVTKLSRKISKIITS
AGKQLVLVFVHARNATVRTAQAILELARENNETSLFDCRQMDGFSQAEKQVQRSRNKEVR
ELFNWGLGVHHAGMLRADRTMLEKLFAKGLIRVLCCTATLAWGVNLPAHAVVIKGTQVYN
AKQGSFVDLGILDVMQIFGRAGRPQFDTTGEGTIITTHNKLSHYLALLTRQHPIESQFVD
CLVDNLNAEISLGTVNTVDDGVRWLSYTYLFVRLRKNPLVYGISALQLENDPTLFKWQHE
LIVMAAMKLNKAHMIRYVQRTGYFHPTDLGRTSSHFYIKYRSIETFNELINSTMDISAIF
SMISKSHEFEQIKVRDDELTELDDLKDDFCHLPIKAGPEDTEGKANILFQTFISRGDVRS
FSLSSDLMYIAQNAGRIVRGVFEIVLKQDRARLAGLLLKLCKSVERRLWAEDSPLRQFGP
RLTNDVLRKIEDKNLTIEKILDSSASEIGHLLHHPRIGEKVRKCAQEIPRVELEVTIQPI
TRTILRIKVVMKPDFTWNNNSHGNTSEAFWIWVQDPVSDHMYHSDYVLMPKKTVVRGEAI
NLTFTIPLTEPHPTQYLVKVESDRWFGAGTVCPITFKHLILPDRHPPHTELTDLEPLPIT
ALKDEKFESVYNFSHFNPIQTQIFHCIYHHDTNVLIGAPTGSGKTVAAELAIFRMLRTQP
GAKAVYVAPLKALVRERMKDWEKRLKHKLGLKLVELTGDIAPDMRAVARADVIITTPEKW
DGVSRSWNTRGYVRKVSLLIIDEIHLLGQDRGPVLEVIVSRTNFISSHTEKAVRVVGLST
ALANARDLADWLGIKQMGLFNFRPSVRPVPMEVHIQGFSGKHYCPRMASMNKTCFQAIQT
HSPTKPVLIFVSSRRQTRLTALDLIAHLGGENDPKQWMHMDEWEMEELTHMVRDPNLRLT
LAFGIGLHHAGLMERDRSLVEKLFSEQKIQSLIATSTLAWGVNLPAHLVIVKGTEYFDGK
QGRYEDFPITDVLQMMGRAGRPQYDDKAVAVILVHDVKKAFYKKFLYEPFPVESSLLQVI
DDHLNAEIVAGTISNKQEAMDYLTWTYFFRRLLMNPSYYGLDDTDHDCVNYYLSKLLERN
IVELRMSGCVAMGNDDDDVMLESTNGGRIASFYYLSHLTLRLLNEDMRPEMPLDDLLKLL
SDAQEYHELPVRHNEDSINSDLAKELPIKVDCNTFDSAHTKTLLLLVAHFQRSSLPSTDY
ATDLKSVLDQAIRVLQAYVDYSADVGWLSTSLRCMHIIQMVSQASWFHENNLMTLPHVER
NKLFIFNKEENIGKIKFCSRKDITFSHLFIQICNHLSALPLVGLELSVRGWWADHPQSED
QRIVVDAYDRSIRDQSTWLVVHADQEYFLSIKLQKSTIGGRHKDDKAVTPRFPKPKLEGW
FLVLGDRENRELVALKRLNTLKRETTETLSFFTPQRVGRMILTLWLVSDSYLGLDQLRDV
RLDVIASDIASQSNQEVK
Nucleotide sequence
Length: 6,770
>KH2012:KH.C12.421.v1.A.ND1-1
ATTCGTGTTGCGCCATACGTTTGTAAATTAAACATCGTTGATTATACTTTGTGCATACCA
CCTTAAGTTATTGTTGTCATACGCAAGCAGGTCTGGGATATTGAATAAAATATGAGCGAC
TTTCCAAGTTTCACAGCAACGTTAAGATCGTTTGGCTCAATTTCAAAGCAGACTGGACAA
CTTAACTTAAATAAGAGATCTGTACACGGCGAATGTGATGTATGGAAAGAATTACAAGCG
ATAGTTCAAGTGAAATGTAAAGAAAAAAGAAAGTTAAATGAACTGAAGGCGTCACTAAGG
GAGTTACTGGAATTAGCATCAGATATTGTTGGTGGTGAAGAAGATATCAAATCAAAGCAT
CTTGCTGCAACTCAAGTCTTCTTTATTCTTTATAAACTTGATGAAGTGGATACCAAAACA
CTTCAGGAAGTTAGACACACCATTGGTCGCGTTGATTTGAAATCGTTGAACAAACACCAC
CAAGTGGTGAAAACAATCTTGGATCTAACACACGATGGTGTACGTGAGCAAATCGAAAAA
CTCGAAAATGATCAAAGTTCAAATGAATTTGGAAGAAAAATAAAGTTTTCAAGTGATCTT
CCAGTGATGGAGATTTCTTACGACTTTGATCGCAAAGATCGGACGAACGGGGTTGATATC
GCAGAAACATTTCGCCAAAAACATAAAGATCTTACTCGGCCAAACAGTGTTGCGCAGTTA
AAAACTGAAAATCGAGTTTCTGCGAACACTGGTTTACCATGGTTAAGAAGACAAATGGAA
TTGAAATTTCAGTCAACTCAGTTAGTTGAACCAACATTGGCTGTTTTGAAGTCAAGTCAA
ACTAATGAACAAATTCAAAATGAGCTTTGCGAGCTTCTTGGCTTCGAACACTTAGACTTA
ATATCTGAATTGCTTCAACGAAGAGAAAGTTTAGTTCAAGATGAAAAACACTTGGCTGCA
ATTAATCAACATAGAGGTAATCTGAGCTTTACCGACGCAGAAAAGCAAGTTGCAAAAGCG
ATTCGAAGAGAAGAGAAAAAGGCAAAGAAACTTCTTAAATCAATGATTCAGCAAAATGAT
GAAGATGACTCTGACTTTTTACCAAGGTTAATGGCGCTACCTGAAGGTGTTGACGTTAAA
AATACAAAAAGATTTGAAGAAGTTTCGATTCCTGCCACCATTGGTTACGCTGGACAACCT
TGGCCACTTGTTAAGATCACTGAGTTGGACGAGATCGGTCAAATGGCGTTCAATGGCATC
AAGAAATTAAACACGATTCAGTCTCGTGTGTTTGAAACTGCGTATCGGACGAATGAAAAC
TTGCTTATTTGCGCGCCCACGGGTGCTGGGAAAACTAACGTAGCAATGTTGAGTATTGTT
AAAGAGATTATTCAAAACGTGGAGAGCGGGGTTATTCAACTTGATAAGTTCAAGATTGTA
TACGTGGCACCAATGAAAGCTCTCGCTGCAGAAATGGCCGAGAATTTTGGTCGCCGTCTT
TCCCCACTAGGTGTCTCTGTACGTGAGCTAACAGGAGACATGCAATTAACGAAGAAGGAA
ATACAAAGCACTCAGATGTTAATTACGACCCCTGAGAAATGGGATGTCGTTACTCGGAAG
TCAACAAGTGATGTTGCTCTTGCACGCCTTGTTCGTCTCCTCATCATTGATGAAGTTCAT
CTACTTCACGACGAGAGAGGTCCCGTGCTTGAAACACTCGTTGCAAGGACGCTGAGACAA
GTTGAAACACAGCAAACTATGATTCGAATTGTTGGACTTTCAGCTACTTTACCCAACTAT
ATTGATGTGGCAAGGTTTTTACGAGTTAACCCTTTATATTTTTTAATTGATGTACATATA
TATATTGTTACGAAACTGTCGCGAAAAATCTCCAAAATAATAACCAGTGCAGGAAAACAA
CTCGTTTTGGTGTTCGTTCATGCACGTAACGCGACAGTACGTACTGCGCAAGCAATTCTT
GAACTCGCAAGGGAAAATAATGAAACGAGTTTATTTGATTGTCGGCAGATGGATGGATTT
AGTCAAGCAGAAAAACAGGTTCAAAGATCACGTAATAAAGAAGTTCGTGAACTTTTCAAC
TGGGGGTTGGGGGTTCACCACGCAGGGATGTTACGTGCAGATCGAACGATGCTGGAAAAG
TTATTTGCAAAGGGTTTGATTCGAGTTTTATGTTGTACGGCAACTCTAGCTTGGGGTGTC
AACCTACCAGCGCACGCAGTTGTTATTAAAGGCACGCAAGTCTATAACGCAAAGCAAGGA
TCCTTCGTGGATTTGGGAATCTTAGATGTTATGCAGATCTTTGGTCGAGCTGGCCGTCCA
CAGTTCGATACAACTGGTGAAGGCACGATTATAACAACACATAATAAGTTGTCCCATTAT
CTTGCATTACTTACACGACAACATCCGATTGAAAGTCAGTTCGTTGATTGTTTGGTCGAC
AATCTGAATGCTGAGATTTCGCTTGGTACGGTAAACACAGTCGATGATGGGGTAAGATGG
CTGTCGTACACTTATCTATTCGTGAGGCTGCGTAAAAATCCACTTGTTTATGGGATATCT
GCTTTGCAGTTAGAGAATGATCCTACACTTTTCAAATGGCAGCATGAGTTAATAGTAATG
GCTGCCATGAAGCTGAACAAAGCTCATATGATCAGATATGTGCAAAGAACAGGATACTTT
CACCCAACGGACCTAGGAAGAACTTCATCGCACTTCTACATCAAATATCGATCGATTGAA
ACTTTTAACGAACTTATCAACTCGACAATGGATATATCGGCAATCTTTTCAATGATCTCG
AAATCTCATGAGTTCGAACAAATTAAGGTACGCGATGATGAACTGACAGAGCTGGATGAC
CTGAAAGATGATTTCTGTCACCTTCCTATTAAAGCTGGTCCTGAGGACACGGAGGGGAAA
GCCAACATTCTCTTCCAGACGTTTATCTCGCGTGGTGACGTGAGGAGCTTCTCGTTATCA
TCGGATCTTATGTACATTGCTCAAAACGCAGGTCGTATCGTTCGTGGAGTTTTTGAAATT
GTGTTGAAACAAGATAGAGCTCGTTTGGCCGGACTGCTGCTCAAGTTATGCAAATCCGTC
GAGCGTAGACTGTGGGCAGAGGACTCGCCACTTCGTCAGTTTGGACCTCGTCTTACCAAC
GACGTTCTTCGTAAAATCGAAGATAAAAATTTGACGATCGAGAAAATTTTAGATTCTTCT
GCGAGTGAAATTGGCCATTTACTCCACCATCCAAGAATTGGTGAAAAAGTTCGTAAATGC
GCGCAAGAAATACCGAGGGTTGAACTGGAGGTGACGATTCAACCGATCACGCGAACAATA
CTTCGGATTAAAGTCGTCATGAAACCTGACTTTACTTGGAATAATAATTCACACGGAAAT
ACATCTGAAGCTTTTTGGATTTGGGTTCAAGATCCAGTATCCGATCATATGTATCACAGT
GATTATGTTTTGATGCCTAAAAAGACGGTTGTCCGAGGTGAAGCAATCAACCTTACTTTT
ACCATTCCTCTTACTGAACCCCACCCCACTCAATATCTTGTTAAAGTTGAATCTGATCGA
TGGTTTGGGGCGGGGACAGTTTGTCCAATCACGTTCAAGCATCTCATTCTACCCGACCGA
CACCCACCCCACACTGAACTGACAGATTTGGAGCCGTTGCCCATAACTGCCCTTAAAGAT
GAAAAGTTTGAATCAGTTTATAATTTCAGTCATTTTAATCCGATTCAAACCCAGATATTT
CATTGTATTTACCATCACGATACAAATGTTTTAATTGGTGCTCCAACAGGTTCTGGTAAA
ACAGTCGCAGCAGAACTTGCGATATTTCGTATGTTGCGAACGCAGCCTGGAGCCAAAGCA
GTTTATGTGGCTCCTCTAAAAGCTCTCGTCCGTGAAAGAATGAAAGATTGGGAAAAACGA
CTCAAACATAAACTTGGCTTAAAACTTGTGGAGCTGACGGGTGACATCGCGCCGGACATG
CGTGCCGTGGCACGTGCCGACGTCATCATTACAACCCCAGAGAAATGGGACGGGGTATCC
CGTAGTTGGAACACAAGGGGTTATGTTCGGAAAGTCTCGCTTCTTATAATTGATGAGATA
CATTTGTTGGGTCAAGACAGGGGACCAGTGTTGGAAGTTATTGTTTCGCGCACAAACTTT
ATATCTTCTCACACAGAGAAGGCAGTTCGTGTTGTTGGTCTCTCGACAGCTCTTGCTAAC
GCTAGAGACTTAGCTGACTGGCTGGGAATTAAGCAGATGGGTTTGTTCAATTTCCGACCA
TCGGTTCGTCCCGTTCCGATGGAAGTTCACATTCAAGGTTTCTCCGGGAAGCACTACTGC
CCTCGTATGGCCTCGATGAACAAAACTTGTTTTCAAGCCATACAAACGCACTCCCCCACC
AAACCTGTCCTTATATTTGTATCGTCACGACGACAGACACGGTTGACTGCACTTGACTTA
ATAGCGCACCTCGGTGGCGAGAACGACCCAAAGCAATGGATGCACATGGATGAATGGGAG
ATGGAGGAGTTAACGCACATGGTTCGCGATCCAAACCTTCGTCTTACGCTTGCATTTGGT
ATCGGACTCCACCATGCAGGACTCATGGAGCGTGATCGCTCTCTAGTGGAGAAACTATTC
TCGGAGCAAAAGATTCAGTCGTTAATTGCCACCTCGACCCTCGCATGGGGGGTGAACTTA
CCCGCTCACCTCGTCATCGTCAAGGGAACGGAATATTTCGACGGCAAACAAGGAAGATAC
GAAGATTTTCCCATCACAGATGTTTTACAAATGATGGGTCGTGCTGGTAGACCTCAATAT
GACGATAAAGCTGTTGCTGTTATTCTTGTTCACGATGTAAAAAAAGCTTTTTATAAAAAA
TTTCTGTATGAACCTTTTCCTGTTGAATCAAGTTTATTGCAGGTTATAGACGACCATTTA
AATGCGGAAATAGTTGCCGGAACTATCAGCAACAAACAAGAAGCCATGGATTACTTAACG
TGGACTTATTTCTTCAGGAGACTTCTCATGAACCCATCCTATTATGGGCTGGATGATACA
GATCATGATTGCGTGAATTACTATTTATCCAAACTACTCGAGCGTAACATCGTTGAGTTA
AGAATGTCAGGTTGTGTTGCTATGGGCAACGACGACGATGATGTCATGTTGGAATCGACC
AATGGCGGAAGAATTGCTTCGTTTTATTACCTCAGTCATCTAACATTAAGATTACTTAAC
GAAGACATGAGACCTGAGATGCCACTAGATGACTTACTAAAGTTATTGAGTGACGCACAG
GAATATCATGAGCTTCCTGTTCGACACAATGAAGATTCAATTAACAGTGACTTGGCCAAA
GAACTCCCGATAAAAGTTGATTGCAACACTTTTGATTCGGCGCACACGAAAACTCTTCTA
CTTCTTGTCGCTCACTTCCAAAGATCATCTTTGCCTTCAACAGATTACGCAACTGATCTC
AAATCTGTGCTTGACCAAGCGATTCGTGTCTTGCAGGCTTATGTGGATTACAGTGCTGAT
GTCGGTTGGCTCTCTACCTCACTCCGGTGCATGCATATTATCCAGATGGTGTCGCAAGCT
AGTTGGTTCCATGAAAATAACTTGATGACGTTACCCCACGTTGAACGCAACAAACTTTTC
ATTTTTAATAAAGAAGAAAATATTGGAAAAATTAAATTCTGTAGCAGGAAAGATATAACT
TTTTCACATTTATTTATCCAGATTTGTAATCATTTATCTGCATTACCATTGGTTGGGTTG
GAACTCAGTGTTAGAGGTTGGTGGGCTGATCATCCACAGTCTGAAGATCAACGCATCGTT
GTTGATGCTTATGATCGTTCAATAAGAGACCAAAGCACTTGGTTAGTCGTTCATGCAGAC
CAAGAATATTTTCTTTCAATCAAGTTACAAAAATCCACTATTGGTGGACGGCATAAAGAT
GATAAAGCAGTTACGCCCAGGTTTCCTAAACCTAAACTTGAAGGTTGGTTTCTTGTGCTT
GGGGATCGAGAGAACAGAGAACTAGTTGCATTGAAGAGACTTAATACTTTAAAACGAGAA
ACAACGGAAACGTTGTCATTCTTTACACCCCAACGCGTTGGAAGGATGATTCTTACACTG
TGGCTTGTGTCCGATTCATATCTTGGTTTGGACCAATTACGTGATGTACGTCTTGACGTC
ATAGCTTCAGATATTGCCTCACAGTCAAATCAAGAAGTCAAATGATTCCGATGAAAGTTT
TAATTTTTGTTGGGTGACAGGGGGTCTTCAGCGTGGTGTTTAAGAAGCTGAATTGAAATT
CATATGTGTCTTTTAGGATAATTTTTGCTTAGGAAAAAATCATTTTCAATATGCACAGTG
CTGCTATGTAGATTTATTTATGTTTTATTTTTAAAAGTTCCAATTTTGTGAAATATTTAT
ATCCACAGCTGAATTTTTAAGTCTAGGAGGTACCATAGGCTTACAACCGGTGCAAAGGAA
AAGATCTTACCCCACAATACTATATCTTTTAAAAATAAAGGGTTCTAGCTTAAATTTATC
TCTTATTAAAACATTGGTAAATGGTAATATGGCAGTTCTTATCTTTTATTTAAATTATCC
ATTTCTTGCTATTGTTAGTTAGTAATAAATATTCTTTTTGTGTAATTCCCAGTAAAAGTA
CATCTTTAATTGTTGTTTATTTATTGTGGAATAAATGACCTTATCTGCTT
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[333-572] 9.71E-43 - T[588-773] 1.51E-36 - T[1108-1393] 4.59E-49 - T[1402-1611] 2.57E-45 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[383-595] 1.6E-28 - T[1212-1414] 9.4E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[389-564] 1.0E-26 - T[1218-1383] 8.6E-26 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[396-579] 23.103 - T[1225-1400] 21.317 |
| SMART |
AAA+_ATPase (IPR003593) - T[401-590] 0.0026 - T[1230-1403] 0.14 |
| CDD |
Helicase_C (IPR001650) - T[574-743] 2.8671E-10 - T[1422-1581] 8.31072E-12 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[593-803] 10.051 - T[1436-1640] 10.459 |
| Pfam |
Helicase_C (IPR001650) - T[628-743] 1.2E-5 - T[1496-1581] 1.3E-5 |
| SMART |
Helicase_C (IPR001650) - T[657-745] 1.2E-14 - T[1486-1583] 1.8E-15 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[773-878] 4.08E-6 - T[1611-1715] 8.7E-6 |
| Pfam |
Sec63-dom (IPR004179) - T[866-1174] 1.1E-73 - T[1703-2036] 1.8E-63 |
| SMART |
Sec63-dom (IPR004179) - T[866-1176] 2.3E-104 - T[1703-2042] 1.1E-94 |
| Gene3D |
C2_domain_sf (IPR035892) - T[1068-1179] 1.4E-35 - T[1932-2054] 1.6E-24 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[1938-2045] 4.34E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ASCC3_HUMAN | 52.239 % | 2211 | 0 |
| U520_HUMAN | 40.524 % | 1450 | 0 |
| HFM1_HUMAN | 36.254 % | 326 | 7.67E-91 |