- Transcript 'KH2012:KH.C1.244.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.244.v1.A.SL1-1
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
KhC1 [5,607,649 / 5,618,638]
Amino acid sequence
Length: 1,767
>KH.C1.244.v1.A.SL1-1
CQIRPVTSKRRDNMAQFVHLPNRYTWLLFVLFVSLSLEINAERSIKKLKGPCGGRDCSKL
GKCGFCVSEKGRRGPPGAQGPTGLQGEIGFPGPEGVMGPKGYGGLPGRPGKAGEKGDRGT
IGVPGYSGINGVPGHPGESGPRGYPGKDGCNGTMGDMGPAGPPGYNGLDGLPGPDGMKGA
KGEPAYVNVEDLTKGARGERGHTGPKGPSGRPGTTGPLGPKGYPGKPGPPGRPGSKGRTG
PQGHKGIGYQGESGEKGEPGPPGLPGSPGFLTGPPDSLFTPIPGPPGNNGSKGMKGNVGM
QGEPGYPGFEGERGRFGEKGEKGVRGLAGGRGPTGAAGVPGYDGRQGERGMPGRSGIDGA
PGMKGEQGEQGPVGAAGLPGLQGLQGPIGSPGSPGNVGKPGTAGPHGQPGINGFDGPPGE
DGLPGQIGLPGNPGVPGVGEKGEPGQKGRNGKHGQDGVPGLPGEEGPRGFPGISGESIPG
LNGRDGPPGLRGEPGQPGARGVAGAPGQIITPDGDHMVGPQGPTGIPGVRGLKGLKGVAG
RDGGPGEKGEKGGECACQDAVGEKGSPGPPGQNGLPGLSGLPGISGQLGEPGEPGESGEN
GPRGFDGQKGRTGEIGPPGQKGEPATLVGDVKGEPGEPGLPGGQGEPGIAGIPGQDGRSG
RRGAHGEKGEVGPQGLPGLPGLKGFQGLKGREGRAGQDAFGLPGQIGFKGEKGDEGFTGP
QGFPGSKGEPGESLGGVAPKGEKGETGSPGRVGFPGLKGTKGEQGKTGVEGVTGDDGERG
DTGEPGLPGVPGEQGLRGPQGESGLPGVPGLSGERGVTGIRGGNGMKGEKGKDGVSYPGP
AGPAGQKGEVGEPGAKGESGSQGFPGLVGLPGPPGLPGLEGTPGLEGLPGKDGSPGEKGE
SALVGRRGPPGPEGPSGVTGPPGKPGIKGNRGPPGLPSSGKLRGPKGSIGFAGRDGETGL
KGDKGSTGLPGETGKPGPAGADGLPGTPGPPGPRGANGRTGPKGSDGIDGLPGLDGMSGL
YGKKGAPGKQGATGPQGFKGEKGSLPPGGLVDVRGQTGEKGDTGPVGEPGQQGLPGPDGP
KGNRGNQGIKGSTGVSGIPGEYGRNGLPGVEGEKGAKGARGRIGLPGVVGRPGPIGETGR
TGLPGPSGFKGQKGMLGEAGQPGLPGREGSPGLHGENGPKGMQGRRGLPGLSGLDGPSGQ
KGERGAIGQSGPKGYPGLVGMKGGRGLPGLDGRDGLNGEPGEDGAPGFDGLDGRPGRRGE
KGKPGVSNVAGPPGATGITGVKGETGLSGLPGESGPIGLKGKRGNPGPAGFSGRPGPVGE
QGLPGFPGPKGEPGLPGGVGIPGRQGLPGKDGQEGFTGHQGLPGIKGMPGLPGQNGLDGV
PGIQGDTGPAGLVGLTGPSGQKGSVGLPGSHGFSGDKGVRGFPGNPGRPGFPGLVGEPGF
KGEPGRSIEPTDLVAGPKGNTGKPGLPGSPGLIGRTGLPGLQGFKGDQGERGLDGRDGIP
GSHGQRGNPGPRGFIGPKGSPGRDGTPGRSGVAGPAGRVRPPGHLIVRHSQTVYIPECPA
GMTKLWEGYSLLYLEGSEKAHGQDLGQAGSCMPRFNTMPFMYCNTQSVCKYGSRNDKSYW
LSTTAAIPMMPVSVDMVPEYISRCSVCESSSIAMAVHSQDMVIPPCPDGWKGIWLGYSFA
MHTAAGAEGGGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTISEENQFG
TPEMETLKAGNLRTRVSRCQVCTRLNQ
Nucleotide sequence
Length: 5,993
>KH2012:KH.C1.244.v1.A.SL1-1
GTGTATGAACTTACTGTGATAGCAGGGTGTAGGATATTATACCACAGACAGGAAGCGGGG
AGCAGTTTACATCGGGTCGTCTGCGGAAGCTTGGCGGCTCTTTGACGGCGAGATCTCCGT
AGTGCCAAATTCGGCCAGTTACGTCAAAAAGAAGAGACAATATGGCGCAATTTGTTCATT
TACCGAATAGATACACATGGCTGCTGTTCGTGTTGTTCGTTTCACTGAGTCTGGAAATCA
ACGCAGAGCGATCTATCAAGAAGCTGAAAGGTCCTTGTGGTGGTCGCGATTGTTCAAAGT
TGGGGAAATGCGGATTCTGCGTTTCAGAGAAAGGCCGCCGGGGACCCCCTGGTGCTCAAG
GACCGACCGGTCTGCAAGGAGAGATTGGTTTCCCGGGTCCTGAAGGAGTCATGGGCCCGA
AAGGATATGGTGGTCTTCCTGGCAGACCTGGGAAAGCTGGAGAGAAAGGAGACAGGGGGA
CTATTGGCGTGCCTGGATATTCAGGGATCAACGGAGTTCCTGGACACCCTGGAGAGTCTG
GTCCCAGAGGATACCCCGGTAAAGATGGGTGCAATGGAACCATGGGTGACATGGGACCTG
CAGGACCTCCTGGATACAATGGCTTAGATGGATTACCGGGTCCTGATGGAATGAAAGGTG
CAAAGGGAGAACCTGCTTATGTGAATGTTGAGGACCTTACTAAAGGTGCAAGAGGTGAAC
GTGGCCACACTGGACCAAAAGGACCTTCTGGAAGACCTGGTACCACTGGTCCCTTGGGTC
CCAAAGGTTACCCTGGCAAACCAGGTCCACCTGGAAGGCCAGGAAGTAAAGGTCGAACAG
GTCCTCAAGGCCATAAAGGAATTGGTTACCAGGGAGAGAGTGGTGAAAAGGGTGAACCTG
GCCCTCCAGGATTACCTGGTAGCCCTGGATTTTTGACTGGCCCTCCTGACAGTTTGTTTA
CACCAATTCCTGGACCACCAGGAAATAATGGGTCAAAGGGAATGAAGGGTAATGTCGGCA
TGCAAGGAGAACCTGGTTACCCAGGATTTGAAGGAGAAAGAGGAAGATTTGGTGAAAAGG
GAGAGAAGGGCGTTCGTGGATTGGCTGGAGGACGAGGACCCACTGGTGCAGCCGGAGTAC
CGGGTTATGATGGCAGACAGGGAGAACGTGGGATGCCTGGAAGAAGTGGAATTGATGGAG
CTCCCGGTATGAAAGGGGAGCAAGGAGAGCAAGGTCCAGTAGGAGCAGCAGGTCTTCCTG
GATTACAGGGCCTACAAGGACCTATTGGTTCTCCCGGGTCACCAGGAAATGTTGGTAAAC
CAGGTACAGCAGGACCACATGGTCAGCCAGGAATAAATGGTTTTGATGGACCACCTGGTG
AAGATGGTCTACCTGGTCAGATAGGTCTGCCTGGTAACCCTGGTGTGCCTGGTGTTGGTG
AAAAAGGAGAACCAGGACAGAAAGGTCGTAATGGTAAACATGGTCAGGATGGTGTCCCAG
GTTTACCTGGTGAAGAAGGGCCAAGAGGATTTCCAGGAATTTCTGGTGAATCCATTCCTG
GACTGAATGGAAGAGATGGCCCGCCCGGATTACGGGGTGAACCTGGACAGCCTGGTGCGA
GAGGTGTAGCTGGTGCACCTGGTCAAATTATCACACCAGATGGAGATCATATGGTTGGTC
CACAAGGTCCAACAGGAATACCCGGTGTACGTGGTTTAAAGGGTCTCAAAGGTGTTGCTG
GTAGGGATGGTGGCCCTGGAGAAAAAGGAGAGAAAGGGGGTGAATGTGCGTGTCAAGATG
CAGTAGGGGAAAAAGGAAGTCCTGGACCTCCTGGCCAAAATGGTCTGCCTGGACTATCAG
GGTTACCTGGCATCAGTGGCCAGCTGGGTGAGCCTGGTGAACCAGGAGAATCTGGTGAAA
ACGGACCAAGAGGATTTGATGGCCAAAAAGGAAGAACTGGTGAGATAGGTCCACCAGGTC
AAAAAGGTGAACCAGCAACTTTGGTCGGAGATGTTAAAGGAGAACCAGGTGAACCAGGTT
TGCCTGGTGGTCAAGGTGAACCAGGGATTGCTGGAATTCCTGGTCAAGATGGCAGATCTG
GTAGAAGAGGAGCACATGGAGAAAAGGGTGAAGTTGGACCGCAAGGTTTGCCAGGTCTAC
CGGGTTTAAAAGGTTTCCAAGGACTTAAAGGTAGAGAAGGGAGAGCTGGACAAGATGCGT
TTGGTTTGCCTGGTCAAATTGGCTTCAAAGGAGAAAAAGGAGATGAAGGATTCACAGGAC
CACAGGGTTTTCCTGGATCAAAAGGAGAACCTGGTGAGTCACTAGGAGGAGTTGCTCCTA
AAGGAGAAAAAGGAGAGACAGGATCACCGGGTAGAGTTGGATTTCCTGGGCTGAAAGGTA
CAAAAGGAGAACAAGGAAAAACTGGGGTTGAAGGTGTCACCGGGGATGATGGAGAGAGAG
GTGACACTGGTGAACCTGGATTACCTGGAGTGCCAGGAGAACAAGGTCTAAGAGGACCAC
AAGGCGAATCTGGCTTGCCAGGGGTACCTGGTTTATCTGGTGAACGTGGTGTCACTGGTA
TACGAGGAGGCAATGGTATGAAGGGTGAAAAAGGTAAAGATGGTGTTTCATACCCTGGTC
CTGCTGGCCCTGCTGGCCAGAAAGGTGAAGTAGGAGAACCGGGAGCTAAGGGAGAGTCTG
GAAGCCAAGGATTCCCAGGATTAGTTGGCCTGCCTGGTCCTCCTGGATTACCTGGTTTAG
AGGGAACTCCAGGTTTAGAGGGTTTGCCTGGAAAAGATGGTTCACCAGGTGAAAAGGGTG
AATCAGCACTTGTTGGAAGGAGAGGTCCACCTGGACCAGAAGGACCAAGTGGTGTTACTG
GTCCACCAGGTAAACCTGGGATTAAAGGTAATAGAGGACCACCAGGTTTACCATCAAGTG
GTAAACTAAGGGGACCAAAGGGATCAATTGGATTTGCTGGAAGAGATGGTGAAACTGGTC
TTAAAGGTGACAAGGGGTCAACTGGTTTGCCTGGTGAAACTGGTAAACCCGGTCCTGCTG
GAGCAGATGGTCTTCCTGGAACTCCCGGTCCACCTGGACCTCGAGGTGCCAATGGTAGAA
CTGGACCAAAGGGAAGCGATGGCATAGATGGCTTACCTGGTCTTGATGGTATGTCAGGAC
TTTATGGCAAAAAGGGAGCTCCAGGTAAACAGGGAGCGACTGGTCCTCAAGGATTTAAAG
GTGAAAAAGGTTCACTACCTCCGGGTGGTTTGGTCGATGTCAGAGGACAAACTGGTGAGA
AGGGTGACACTGGGCCAGTAGGAGAACCTGGACAGCAAGGTCTTCCTGGACCTGATGGAC
CCAAAGGAAACAGGGGAAACCAAGGTATTAAGGGTTCCACTGGTGTTTCTGGAATACCAG
GAGAATACGGGCGGAATGGTTTACCTGGAGTGGAAGGAGAAAAAGGGGCAAAAGGAGCAA
GAGGACGTATTGGACTACCGGGTGTTGTTGGTAGACCTGGTCCCATTGGCGAAACTGGCA
GAACTGGTTTGCCAGGACCTTCGGGTTTTAAGGGACAGAAAGGTATGTTGGGTGAAGCAG
GTCAACCTGGCCTACCTGGTAGGGAGGGAAGTCCTGGGTTACATGGAGAAAATGGACCCA
AGGGAATGCAAGGCAGAAGAGGTTTGCCTGGACTAAGTGGATTAGATGGACCATCTGGTC
AAAAGGGTGAAAGAGGTGCCATTGGACAATCAGGACCAAAAGGTTACCCAGGGTTGGTGG
GAATGAAAGGTGGTCGTGGTTTGCCTGGTTTGGATGGACGAGATGGTTTGAATGGTGAAC
CAGGGGAGGATGGAGCACCTGGATTTGATGGTTTGGATGGTCGACCTGGAAGGAGAGGAG
AAAAGGGAAAACCAGGTGTATCTAATGTTGCGGGTCCACCAGGTGCAACTGGAATTACAG
GTGTTAAAGGAGAAACTGGTTTATCCGGTTTACCTGGTGAATCAGGTCCCATTGGGCTTA
AGGGGAAGAGAGGCAACCCAGGACCAGCGGGATTTTCTGGAAGACCTGGTCCAGTTGGTG
AACAAGGTTTGCCAGGTTTTCCTGGACCAAAAGGAGAACCAGGTCTACCTGGAGGAGTTG
GTATCCCTGGCAGACAAGGTTTACCTGGAAAGGATGGACAAGAAGGGTTTACTGGGCATC
AAGGTTTGCCTGGAATTAAGGGAATGCCTGGGTTGCCAGGCCAAAATGGTCTTGATGGTG
TTCCTGGTATTCAAGGAGATACAGGACCAGCAGGTTTAGTTGGTCTTACTGGACCTTCAG
GCCAAAAAGGAAGTGTTGGATTACCAGGATCTCATGGGTTTTCTGGTGACAAAGGTGTAA
GAGGATTTCCAGGAAACCCAGGACGGCCAGGTTTTCCAGGTCTTGTAGGAGAACCTGGGT
TCAAAGGTGAACCAGGTAGGTCTATTGAACCAACAGATCTTGTTGCTGGACCAAAAGGAA
ACACTGGAAAACCTGGTTTACCTGGATCACCTGGTTTGATTGGCAGAACTGGTCTTCCAG
GACTACAAGGTTTTAAGGGTGATCAAGGTGAACGTGGTTTGGATGGACGTGATGGAATAC
CAGGTTCACATGGACAGAGAGGAAATCCAGGCCCTCGTGGCTTTATTGGACCTAAAGGAA
GCCCAGGACGAGATGGAACTCCTGGTCGATCTGGTGTAGCTGGTCCCGCTGGACGTGTTC
GTCCTCCAGGCCATCTTATTGTTCGTCACAGTCAAACTGTTTATATACCGGAGTGTCCAG
CTGGAATGACTAAACTTTGGGAAGGTTACAGTTTGCTTTACCTTGAAGGGAGTGAAAAGG
CTCACGGTCAAGATTTGGGTCAAGCGGGGTCTTGCATGCCACGATTCAACACGATGCCAT
TCATGTACTGTAACACACAAAGTGTGTGCAAGTATGGAAGTAGGAATGATAAGTCATATT
GGTTATCCACCACAGCTGCTATTCCTATGATGCCCGTTTCTGTTGATATGGTTCCTGAAT
ACATCAGTAGATGCTCAGTATGTGAATCATCTTCAATTGCTATGGCAGTCCACAGTCAAG
ATATGGTAATTCCACCTTGCCCAGATGGATGGAAAGGAATCTGGCTTGGCTACAGTTTTG
CTATGCATACAGCGGCTGGTGCTGAAGGTGGAGGTCAGTCTCTATCCAGCCCAGGTTCTT
GCTTACAAGACTTCCGTGCAACACCTTTCATAGAGTGTAACGGTGCAAGAGGTCACTGCT
TCTTTTACAACAACCAGTACAGTTTCTGGCTTACGACAATTTCTGAGGAAAATCAATTTG
GAACACCTGAAATGGAAACGCTGAAAGCTGGAAACTTACGAACAAGGGTTAGTCGATGCC
AAGTGTGCACACGGTTGAATCAGTAAAGAGCTCCCATTGGGAACAAGGAAACTCTTTGAG
CACACTAACTCAGTTCAAAACAAAACCGAGAACAAATTCTGCTCACACATATGCCTTGTA
GCCAACAATCATTGCATTTTTCCATTAACGCCATTCAGCATATACTTTACATTGAGTTGG
TTTAATCGTGTGCGTATGTTGCCAATTGTCCAATACCACTTTCAGGGGACAATGCTTTTA
ACTAATATCATTCAAACTGAATGAGGCAGTATTCAGCACAATACAGCATACTTACAGTGT
TTGTTGTTTCTGTACATAACGTGATTTTTTACTGTTATATCATTTATACCTTTATAGCGA
ATCTCTTTCCTTCCCTAAAAATACTGAACCAGCTACAGGTGCCTTGATAGCAAATCCACG
TCAGTCAGGAGAATATAATTTATTTTAAAGGCAACGTTAATTTTTCTGACCGCCCGTTTT
TTCAACCTCCCATGCTATAAACGTACAATAGTTTATAACTACACATGCTTACTCAAACCG
TTGTTTCATTTTGTGTGCAACTATGCCCGAGTTAAATTAAATGATTTACACGA
| Pfam |
Collagen (IPR008160) - T[71-128] 6.5E-8 - T[125-184] 4.1E-9 - T[195-246] 3.0E-7 - T[284-341] 2.7E-7 - T[335-393] 1.4E-7 - T[380-437] 7.0E-7 - T[633-691] 8.9E-8 - T[741-795] 1.9E-8 - T[779-834] 6.7E-8 - T[838-890] 1.2E-8 - T[878-935] 5.1E-8 - T[943-996] 2.6E-8 - T[1328-1386] 1.0E-7 - T[1388-1446] 1.9E-9 - T[1456-1507] 6.7E-8 - T[1480-1538] 1.3E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1540-1765] 3.2E-109 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1543-1766] 113.154 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1543-1650] 9.1E-58 - T[1651-1765] 6.5E-66 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1545-1648] 1.4E-35 - T[1653-1763] 2.6E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1545-1651] 4.94E-42 - T[1652-1763] 4.24E-43 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 47.217 % | 614 | 0 |
| CO4A1_HUMAN | 40.147 % | 571 | 7.01E-174 |
| CO4A6_HUMAN | 42.834 % | 741 | 0 |