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- Transcript 'KH2012:KH.S852.1.v1....' >
- Transcript 'KH2012:KH.C1.244.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.244.v1.A.SL4-1
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
KhC1 [5,607,649 / 5,618,613]
Amino acid sequence
Length: 1,767
>KH.C1.244.v1.A.SL4-1
CQIRPVTSKRRDNMAQFVHLPNRYTWLLFVLFVSLSLEINAERSIKKLKGPCGGRDCSKL
GKCGFCVSEKGRRGPPGAQGPTGLQGEIGFPGPEGVMGPKGYGGLPGRPGKAGEKGDRGT
IGVPGYSGINGVPGHPGESGPRGYPGKDGCNGTMGDMGPAGPPGYNGLDGLPGPDGMKGA
KGEPAYVNVEDLTKGARGERGHTGPKGPSGRPGTTGPLGPKGYPGKPGPPGRPGSKGRTG
PQGHKGIGYQGESGEKGEPGPPGLPGSPGFLTGPPDSLFTPIPGPPGNNGSKGMKGNVGM
QGEPGYPGFEGERGRFGEKGEKGVRGLAGGRGPTGAAGVPGYDGRQGERGMPGRSGIDGA
PGMKGEQGEQGPVGAAGLPGLQGLQGPIGSPGSPGNVGKPGTAGPHGQPGINGFDGPPGE
DGLPGQIGLPGNPGVPGVGEKGEPGQKGRNGKHGQDGVPGLPGEEGPRGFPGISGESIPG
LNGRDGPPGLRGEPGQPGARGVAGAPGQIITPDGDHMVGPQGPTGIPGVRGLKGLKGVAG
RDGGPGEKGEKGGECACQDAVGEKGSPGPPGQNGLPGLSGLPGISGQLGEPGEPGESGEN
GPRGFDGQKGRTGEIGPPGQKGEPATLVGDVKGEPGEPGLPGGQGEPGIAGIPGQDGRSG
RRGAHGEKGEVGPQGLPGLPGLKGFQGLKGREGRAGQDAFGLPGQIGFKGEKGDEGFTGP
QGFPGSKGEPGESLGGVAPKGEKGETGSPGRVGFPGLKGTKGEQGKTGVEGVTGDDGERG
DTGEPGLPGVPGEQGLRGPQGESGLPGVPGLSGERGVTGIRGGNGMKGEKGKDGVSYPGP
AGPAGQKGEVGEPGAKGESGSQGFPGLVGLPGPPGLPGLEGTPGLEGLPGKDGSPGEKGE
SALVGRRGPPGPEGPSGVTGPPGKPGIKGNRGPPGLPSSGKLRGPKGSIGFAGRDGETGL
KGDKGSTGLPGETGKPGPAGADGLPGTPGPPGPRGANGRTGPKGSDGIDGLPGLDGMSGL
YGKKGAPGKQGATGPQGFKGEKGSLPPGGLVDVRGQTGEKGDTGPVGEPGQQGLPGPDGP
KGNRGNQGIKGSTGVSGIPGEYGRNGLPGVEGEKGAKGARGRIGLPGVVGRPGPIGETGR
TGLPGPSGFKGQKGMLGEAGQPGLPGREGSPGLHGENGPKGMQGRRGLPGLSGLDGPSGQ
KGERGAIGQSGPKGYPGLVGMKGGRGLPGLDGRDGLNGEPGEDGAPGFDGLDGRPGRRGE
KGKPGVSNVAGPPGATGITGVKGETGLSGLPGESGPIGLKGKRGNPGPAGFSGRPGPVGE
QGLPGFPGPKGEPGLPGGVGIPGRQGLPGKDGQEGFTGHQGLPGIKGMPGLPGQNGLDGV
PGIQGDTGPAGLVGLTGPSGQKGSVGLPGSHGFSGDKGVRGFPGNPGRPGFPGLVGEPGF
KGEPGRSIEPTDLVAGPKGNTGKPGLPGSPGLIGRTGLPGLQGFKGDQGERGLDGRDGIP
GSHGQRGNPGPRGFIGPKGSPGRDGTPGRSGVAGPAGRVRPPGHLIVRHSQTVYIPECPA
GMTKLWEGYSLLYLEGSEKAHGQDLGQAGSCMPRFNTMPFMYCNTQSVCKYGSRNDKSYW
LSTTAAIPMMPVSVDMVPEYISRCSVCESSSIAMAVHSQDMVIPPCPDGWKGIWLGYSFA
MHTAAGAEGGGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTISEENQFG
TPEMETLKAGNLRTRVSRCQVCTRLNQ
Nucleotide sequence
Length: 5,968
>KH2012:KH.C1.244.v1.A.SL4-1
GGTGTAGGATATTATACCACAGACAGGAAGCGGGGAGCAGTTTACATCGGGTCGTCTGCG
GAAGCTTGGCGGCTCTTTGACGGCGAGATCTCCGTAGTGCCAAATTCGGCCAGTTACGTC
AAAAAGAAGAGACAATATGGCGCAATTTGTTCATTTACCGAATAGATACACATGGCTGCT
GTTCGTGTTGTTCGTTTCACTGAGTCTGGAAATCAACGCAGAGCGATCTATCAAGAAGCT
GAAAGGTCCTTGTGGTGGTCGCGATTGTTCAAAGTTGGGGAAATGCGGATTCTGCGTTTC
AGAGAAAGGCCGCCGGGGACCCCCTGGTGCTCAAGGACCGACCGGTCTGCAAGGAGAGAT
TGGTTTCCCGGGTCCTGAAGGAGTCATGGGCCCGAAAGGATATGGTGGTCTTCCTGGCAG
ACCTGGGAAAGCTGGAGAGAAAGGAGACAGGGGGACTATTGGCGTGCCTGGATATTCAGG
GATCAACGGAGTTCCTGGACACCCTGGAGAGTCTGGTCCCAGAGGATACCCCGGTAAAGA
TGGGTGCAATGGAACCATGGGTGACATGGGACCTGCAGGACCTCCTGGATACAATGGCTT
AGATGGATTACCGGGTCCTGATGGAATGAAAGGTGCAAAGGGAGAACCTGCTTATGTGAA
TGTTGAGGACCTTACTAAAGGTGCAAGAGGTGAACGTGGCCACACTGGACCAAAAGGACC
TTCTGGAAGACCTGGTACCACTGGTCCCTTGGGTCCCAAAGGTTACCCTGGCAAACCAGG
TCCACCTGGAAGGCCAGGAAGTAAAGGTCGAACAGGTCCTCAAGGCCATAAAGGAATTGG
TTACCAGGGAGAGAGTGGTGAAAAGGGTGAACCTGGCCCTCCAGGATTACCTGGTAGCCC
TGGATTTTTGACTGGCCCTCCTGACAGTTTGTTTACACCAATTCCTGGACCACCAGGAAA
TAATGGGTCAAAGGGAATGAAGGGTAATGTCGGCATGCAAGGAGAACCTGGTTACCCAGG
ATTTGAAGGAGAAAGAGGAAGATTTGGTGAAAAGGGAGAGAAGGGCGTTCGTGGATTGGC
TGGAGGACGAGGACCCACTGGTGCAGCCGGAGTACCGGGTTATGATGGCAGACAGGGAGA
ACGTGGGATGCCTGGAAGAAGTGGAATTGATGGAGCTCCCGGTATGAAAGGGGAGCAAGG
AGAGCAAGGTCCAGTAGGAGCAGCAGGTCTTCCTGGATTACAGGGCCTACAAGGACCTAT
TGGTTCTCCCGGGTCACCAGGAAATGTTGGTAAACCAGGTACAGCAGGACCACATGGTCA
GCCAGGAATAAATGGTTTTGATGGACCACCTGGTGAAGATGGTCTACCTGGTCAGATAGG
TCTGCCTGGTAACCCTGGTGTGCCTGGTGTTGGTGAAAAAGGAGAACCAGGACAGAAAGG
TCGTAATGGTAAACATGGTCAGGATGGTGTCCCAGGTTTACCTGGTGAAGAAGGGCCAAG
AGGATTTCCAGGAATTTCTGGTGAATCCATTCCTGGACTGAATGGAAGAGATGGCCCGCC
CGGATTACGGGGTGAACCTGGACAGCCTGGTGCGAGAGGTGTAGCTGGTGCACCTGGTCA
AATTATCACACCAGATGGAGATCATATGGTTGGTCCACAAGGTCCAACAGGAATACCCGG
TGTACGTGGTTTAAAGGGTCTCAAAGGTGTTGCTGGTAGGGATGGTGGCCCTGGAGAAAA
AGGAGAGAAAGGGGGTGAATGTGCGTGTCAAGATGCAGTAGGGGAAAAAGGAAGTCCTGG
ACCTCCTGGCCAAAATGGTCTGCCTGGACTATCAGGGTTACCTGGCATCAGTGGCCAGCT
GGGTGAGCCTGGTGAACCAGGAGAATCTGGTGAAAACGGACCAAGAGGATTTGATGGCCA
AAAAGGAAGAACTGGTGAGATAGGTCCACCAGGTCAAAAAGGTGAACCAGCAACTTTGGT
CGGAGATGTTAAAGGAGAACCAGGTGAACCAGGTTTGCCTGGTGGTCAAGGTGAACCAGG
GATTGCTGGAATTCCTGGTCAAGATGGCAGATCTGGTAGAAGAGGAGCACATGGAGAAAA
GGGTGAAGTTGGACCGCAAGGTTTGCCAGGTCTACCGGGTTTAAAAGGTTTCCAAGGACT
TAAAGGTAGAGAAGGGAGAGCTGGACAAGATGCGTTTGGTTTGCCTGGTCAAATTGGCTT
CAAAGGAGAAAAAGGAGATGAAGGATTCACAGGACCACAGGGTTTTCCTGGATCAAAAGG
AGAACCTGGTGAGTCACTAGGAGGAGTTGCTCCTAAAGGAGAAAAAGGAGAGACAGGATC
ACCGGGTAGAGTTGGATTTCCTGGGCTGAAAGGTACAAAAGGAGAACAAGGAAAAACTGG
GGTTGAAGGTGTCACCGGGGATGATGGAGAGAGAGGTGACACTGGTGAACCTGGATTACC
TGGAGTGCCAGGAGAACAAGGTCTAAGAGGACCACAAGGCGAATCTGGCTTGCCAGGGGT
ACCTGGTTTATCTGGTGAACGTGGTGTCACTGGTATACGAGGAGGCAATGGTATGAAGGG
TGAAAAAGGTAAAGATGGTGTTTCATACCCTGGTCCTGCTGGCCCTGCTGGCCAGAAAGG
TGAAGTAGGAGAACCGGGAGCTAAGGGAGAGTCTGGAAGCCAAGGATTCCCAGGATTAGT
TGGCCTGCCTGGTCCTCCTGGATTACCTGGTTTAGAGGGAACTCCAGGTTTAGAGGGTTT
GCCTGGAAAAGATGGTTCACCAGGTGAAAAGGGTGAATCAGCACTTGTTGGAAGGAGAGG
TCCACCTGGACCAGAAGGACCAAGTGGTGTTACTGGTCCACCAGGTAAACCTGGGATTAA
AGGTAATAGAGGACCACCAGGTTTACCATCAAGTGGTAAACTAAGGGGACCAAAGGGATC
AATTGGATTTGCTGGAAGAGATGGTGAAACTGGTCTTAAAGGTGACAAGGGGTCAACTGG
TTTGCCTGGTGAAACTGGTAAACCCGGTCCTGCTGGAGCAGATGGTCTTCCTGGAACTCC
CGGTCCACCTGGACCTCGAGGTGCCAATGGTAGAACTGGACCAAAGGGAAGCGATGGCAT
AGATGGCTTACCTGGTCTTGATGGTATGTCAGGACTTTATGGCAAAAAGGGAGCTCCAGG
TAAACAGGGAGCGACTGGTCCTCAAGGATTTAAAGGTGAAAAAGGTTCACTACCTCCGGG
TGGTTTGGTCGATGTCAGAGGACAAACTGGTGAGAAGGGTGACACTGGGCCAGTAGGAGA
ACCTGGACAGCAAGGTCTTCCTGGACCTGATGGACCCAAAGGAAACAGGGGAAACCAAGG
TATTAAGGGTTCCACTGGTGTTTCTGGAATACCAGGAGAATACGGGCGGAATGGTTTACC
TGGAGTGGAAGGAGAAAAAGGGGCAAAAGGAGCAAGAGGACGTATTGGACTACCGGGTGT
TGTTGGTAGACCTGGTCCCATTGGCGAAACTGGCAGAACTGGTTTGCCAGGACCTTCGGG
TTTTAAGGGACAGAAAGGTATGTTGGGTGAAGCAGGTCAACCTGGCCTACCTGGTAGGGA
GGGAAGTCCTGGGTTACATGGAGAAAATGGACCCAAGGGAATGCAAGGCAGAAGAGGTTT
GCCTGGACTAAGTGGATTAGATGGACCATCTGGTCAAAAGGGTGAAAGAGGTGCCATTGG
ACAATCAGGACCAAAAGGTTACCCAGGGTTGGTGGGAATGAAAGGTGGTCGTGGTTTGCC
TGGTTTGGATGGACGAGATGGTTTGAATGGTGAACCAGGGGAGGATGGAGCACCTGGATT
TGATGGTTTGGATGGTCGACCTGGAAGGAGAGGAGAAAAGGGAAAACCAGGTGTATCTAA
TGTTGCGGGTCCACCAGGTGCAACTGGAATTACAGGTGTTAAAGGAGAAACTGGTTTATC
CGGTTTACCTGGTGAATCAGGTCCCATTGGGCTTAAGGGGAAGAGAGGCAACCCAGGACC
AGCGGGATTTTCTGGAAGACCTGGTCCAGTTGGTGAACAAGGTTTGCCAGGTTTTCCTGG
ACCAAAAGGAGAACCAGGTCTACCTGGAGGAGTTGGTATCCCTGGCAGACAAGGTTTACC
TGGAAAGGATGGACAAGAAGGGTTTACTGGGCATCAAGGTTTGCCTGGAATTAAGGGAAT
GCCTGGGTTGCCAGGCCAAAATGGTCTTGATGGTGTTCCTGGTATTCAAGGAGATACAGG
ACCAGCAGGTTTAGTTGGTCTTACTGGACCTTCAGGCCAAAAAGGAAGTGTTGGATTACC
AGGATCTCATGGGTTTTCTGGTGACAAAGGTGTAAGAGGATTTCCAGGAAACCCAGGACG
GCCAGGTTTTCCAGGTCTTGTAGGAGAACCTGGGTTCAAAGGTGAACCAGGTAGGTCTAT
TGAACCAACAGATCTTGTTGCTGGACCAAAAGGAAACACTGGAAAACCTGGTTTACCTGG
ATCACCTGGTTTGATTGGCAGAACTGGTCTTCCAGGACTACAAGGTTTTAAGGGTGATCA
AGGTGAACGTGGTTTGGATGGACGTGATGGAATACCAGGTTCACATGGACAGAGAGGAAA
TCCAGGCCCTCGTGGCTTTATTGGACCTAAAGGAAGCCCAGGACGAGATGGAACTCCTGG
TCGATCTGGTGTAGCTGGTCCCGCTGGACGTGTTCGTCCTCCAGGCCATCTTATTGTTCG
TCACAGTCAAACTGTTTATATACCGGAGTGTCCAGCTGGAATGACTAAACTTTGGGAAGG
TTACAGTTTGCTTTACCTTGAAGGGAGTGAAAAGGCTCACGGTCAAGATTTGGGTCAAGC
GGGGTCTTGCATGCCACGATTCAACACGATGCCATTCATGTACTGTAACACACAAAGTGT
GTGCAAGTATGGAAGTAGGAATGATAAGTCATATTGGTTATCCACCACAGCTGCTATTCC
TATGATGCCCGTTTCTGTTGATATGGTTCCTGAATACATCAGTAGATGCTCAGTATGTGA
ATCATCTTCAATTGCTATGGCAGTCCACAGTCAAGATATGGTAATTCCACCTTGCCCAGA
TGGATGGAAAGGAATCTGGCTTGGCTACAGTTTTGCTATGCATACAGCGGCTGGTGCTGA
AGGTGGAGGTCAGTCTCTATCCAGCCCAGGTTCTTGCTTACAAGACTTCCGTGCAACACC
TTTCATAGAGTGTAACGGTGCAAGAGGTCACTGCTTCTTTTACAACAACCAGTACAGTTT
CTGGCTTACGACAATTTCTGAGGAAAATCAATTTGGAACACCTGAAATGGAAACGCTGAA
AGCTGGAAACTTACGAACAAGGGTTAGTCGATGCCAAGTGTGCACACGGTTGAATCAGTA
AAGAGCTCCCATTGGGAACAAGGAAACTCTTTGAGCACACTAACTCAGTTCAAAACAAAA
CCGAGAACAAATTCTGCTCACACATATGCCTTGTAGCCAACAATCATTGCATTTTTCCAT
TAACGCCATTCAGCATATACTTTACATTGAGTTGGTTTAATCGTGTGCGTATGTTGCCAA
TTGTCCAATACCACTTTCAGGGGACAATGCTTTTAACTAATATCATTCAAACTGAATGAG
GCAGTATTCAGCACAATACAGCATACTTACAGTGTTTGTTGTTTCTGTACATAACGTGAT
TTTTTACTGTTATATCATTTATACCTTTATAGCGAATCTCTTTCCTTCCCTAAAAATACT
GAACCAGCTACAGGTGCCTTGATAGCAAATCCACGTCAGTCAGGAGAATATAATTTATTT
TAAAGGCAACGTTAATTTTTCTGACCGCCCGTTTTTTCAACCTCCCATGCTATAAACGTA
CAATAGTTTATAACTACACATGCTTACTCAAACCGTTGTTTCATTTTGTGTGCAACTATG
CCCGAGTTAAATTAAATGATTTACACGA
| Pfam |
Collagen (IPR008160) - T[71-128] 6.5E-8 - T[125-184] 4.1E-9 - T[195-246] 3.0E-7 - T[284-341] 2.7E-7 - T[335-393] 1.4E-7 - T[380-437] 7.0E-7 - T[633-691] 8.9E-8 - T[741-795] 1.9E-8 - T[779-834] 6.7E-8 - T[838-890] 1.2E-8 - T[878-935] 5.1E-8 - T[943-996] 2.6E-8 - T[1328-1386] 1.0E-7 - T[1388-1446] 1.9E-9 - T[1456-1507] 6.7E-8 - T[1480-1538] 1.3E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1540-1765] 3.2E-109 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1543-1766] 113.154 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1543-1650] 9.1E-58 - T[1651-1765] 6.5E-66 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1545-1648] 1.4E-35 - T[1653-1763] 2.6E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1545-1651] 4.94E-42 - T[1652-1763] 4.24E-43 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 47.217 % | 614 | 0 |
| CO4A1_HUMAN | 40.147 % | 571 | 7.01E-174 |
| CO4A6_HUMAN | 42.834 % | 741 | 0 |