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  1. Transcript 'KH2012:KH.C12.47.v2....'

Transcript Model

Transcript Id

KH2012:KH.C12.47.v2.A.nonSL11-1

Possible name(s)

PDHA1; PDHA2; RPS18

Location

KhC12 [1,592,041 / 1,597,310]

Sequences

Amino acid sequence

Length: 520

>KH.C12.47.v2.A.nonSL11-1
ARKHVSKMSLVIPEKFQHILRILNTNIDGRRHIAFALTAIKGIGRRFSTLVCKKADVDLT
KRAGELSDDEIDRIVTIMQNPRQYKIPDWFLNRQKDVRDGKFGQILSNQLDNKLREDIER
LKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTPLGVRTYSVEATFPIKPIDTHKLENTPA
TEVQINKDDAISYYTKMQIIRRMELKADQLYKQKIIRGFCHLYDGQEACCAGIEASLTPK
DDVITAYRAHGWAYIRGVPVCNILAELFGRKLGCAKGKGGSMHMYSKNFYGGNGIVGAQV
PLGAGIAFAHKYRNSDTVTVACYGDGAANQGQIFESFNMSQLWKLPAIFVCENNRYGMGT
SVERASASTDYFTRGDYIPGLRVDGMDVLAVREATRFAKEHAVKEGPILMELVTYRYHGH
SMSDPGTSYRTRDEVKEIRQNLDPIMNFREKIISAGFVTKQDVATIDAEVKQHVENETAK
ALASTEPDFDQIACDIYVTDTPLSIRSCNIYNQLHHQPSV

Nucleotide sequence

Length: 2,065

>KH2012:KH.C12.47.v2.A.nonSL11-1
GATCAAGGGTGAGCTCGTAAGCACGTTAGCAAGATGTCCTTAGTAATCCCGGAGAAGTTT
CAGCACATTCTTCGTATTTTAAATACGAATATTGATGGTCGCCGTCATATCGCATTCGCC
TTGACCGCCATCAAGGGAATCGGCCGCAGGTTTAGCACTCTGGTGTGCAAAAAAGCCGAC
GTTGATCTTACGAAACGCGCCGGGGAGCTTTCCGATGATGAGATTGATCGCATCGTCACG
ATCATGCAAAACCCTCGCCAGTACAAGATTCCCGACTGGTTTTTGAATAGACAAAAGGAT
GTTCGTGATGGCAAGTTTGGTCAAATTCTTTCCAACCAGCTTGACAACAAACTTCGTGAA
GACATCGAACGTTTGAAGAAGATTCGTGCTCACAGGGGTTTGCGACACTACTGGGGCCTC
CGTGTTCGAGGCCAACACACCAAAACCACAGGACGGCGTGGTCGAACTCCCTTGGGTGTT
CGAACTTATTCTGTGGAAGCAACATTTCCCATCAAACCAATTGACACACACAAGCTTGAA
AACACACCTGCAACTGAAGTACAGATCAACAAAGATGATGCAATATCTTACTACACGAAA
ATGCAAATTATTCGTCGAATGGAGCTGAAAGCTGATCAACTGTACAAACAAAAAATAATT
CGAGGATTCTGTCATTTGTATGATGGGCAGGAAGCTTGTTGTGCTGGTATTGAGGCATCA
CTGACTCCAAAGGACGATGTGATCACTGCATATCGTGCTCATGGCTGGGCTTACATCAGG
GGTGTACCTGTTTGCAACATTCTAGCTGAACTATTTGGTCGAAAGCTTGGCTGTGCTAAA
GGCAAGGGAGGTTCCATGCATATGTACAGCAAGAATTTCTATGGCGGCAATGGTATTGTT
GGTGCACAAGTACCACTTGGTGCAGGAATTGCATTCGCCCACAAATACAGAAACAGTGAC
ACAGTAACCGTTGCATGTTATGGAGATGGAGCAGCTAACCAGGGTCAAATATTTGAATCA
TTCAACATGTCACAACTGTGGAAGCTGCCTGCTATATTTGTATGCGAGAACAACCGCTAT
GGTATGGGCACATCAGTGGAAAGGGCATCAGCAAGTACAGATTATTTTACTCGAGGCGAT
TACATTCCTGGTTTAAGAGTTGATGGAATGGATGTTCTTGCTGTACGTGAAGCAACGAGG
TTTGCAAAGGAACATGCAGTTAAAGAGGGCCCAATATTGATGGAACTTGTTACATACAGA
TATCATGGACACAGCATGAGTGACCCTGGTACAAGTTATCGTACGCGAGATGAAGTCAAA
GAAATTCGACAGAATTTGGATCCGATTATGAATTTCCGTGAAAAGATAATTTCTGCAGGT
TTCGTTACCAAACAAGACGTTGCGACAATCGATGCTGAAGTGAAACAACATGTTGAAAAC
GAAACTGCAAAAGCTCTTGCCTCAACTGAGCCGGATTTTGATCAAATTGCTTGCGACATT
TATGTCACTGACACCCCCCTTTCTATCCGATCCTGCAACATTTACAACCAGCTACACCAC
CAGCCATCTGTCTAAATATTCTGTTTGCACCATTTTCGTTTACCTTTCTCTTATATTTTT
CAAACTAAAAATTCTAATATATATATAAATCTCGTATTGCAGGTTGAATTAAGACCGTGA
TACATTAAATTATCATAAAGATGTTTATGCTTTAGTAGTAAAGAGGTTAGTACTGTACAA
AGGTAGAAAGATATTTATATTATTCCTTCCAATGTGCAACACTGTTTTACGCGAAAGTGT
TCCGGAATCTTTCAGTTCGCTGTCTTCCTGCTTGGTTGGTGAAGTTTATTAGTCGAATAC
CTCGTAACCGAACCGTTGGATGATCGACGTTGGTACATGTATAAATGATTTGACGTCCTG
TTCAGCAATGCACTTACTATATTGCATCGGCCCAATAGTTTTGTACAGAGAATGATCATC
TGAAGTTGCAGAGGTATTAGCTCTCTAGCGTACGCTTCCGTTTCGCGATAACTTGCTTCA
ACCGTATGGTTCTTTCTGGGTTGTC

InterProScan

Hamap
Ribosomal_S13 (IPR001892) - T[19-160] 22.803
SUPERFAMILY
Ribosomal_S13-like_H2TH (IPR010979) - T[20-152] 3.3E-36
Pfam
Ribosomal_S13 (IPR001892) - T[21-149] 4.7E-54
ProSiteProfiles
Ribosomal_S13 (IPR001892) - T[22-152] 35.364
Gene3D
30s_Rbsml_prot_S13_C (IPR027437) - T[99-146] 1.8E-26
ProSitePatterns
Ribosomal_S13_CS (IPR018269) - T[128-141] .
SUPERFAMILY
THDP-binding (IPR029061) - T[179-511] 5.16E-101
TIGRFAM
Pyrv_DH_E1_asu_subgrp-y (IPR017597) - T[188-497] 1.4E-128
Pfam
DH_E1 (IPR001017) - T[196-487] 6.8E-116

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ODPAT_HUMAN 57.222 % 444 4.19E-154
ODPA_HUMAN 61.111 % 452 5.59E-157
RS18_HUMAN 82.759 % 267 4.39E-88





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