- Transcript 'KH2012:KH.C12.493.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.493.v1.B.SL1-1
Possible name(s)
PRDM1; ZNF235; ZNF683
Gene model
Location
KhC12 [5,069,439 / 5,072,417]
Amino acid sequence
Length: 373
>KH.C12.493.v1.B.SL1-1
LRSSAGKKMRNHRESYESEADENGNNMASDFYERSGVNEPGKFPKVWRDQPKPRVKKRIS
DFSVKYLLDQNVTSPTDSGYGSGSPSPDQNMISNSMTSPVLHKTASGARESDSKDVGFCE
ESAAVPDVHKYYQNVLFAMNSHFLHQHRAAPEVPAGFASSGMPAPTFRPDYYMMQMGKLL
WENAVRKAAIAPSTNQTFVEIKNESLSPSSIPSVSPHSTYSEHHQSTNVLRCKRGPNSGY
KSLPYPLRKENGKIVYECNVCYKRFGQLSNLKVHLRVHTGERPFKCATCSKGFTQLAHLQ
KHNLVHTGEKPHECNVCNKRFSSTSNLKTHMRLHNSNEYTCAGLNSMLGNVPSSLQSALH
FHTGQSPSLRRWY
Nucleotide sequence
Length: 1,478
>KH2012:KH.C12.493.v1.B.SL1-1
CCCATTAGCTTTACCTGCTCGATTTATTATTAGCTAAAGTTGCGAAACACTCTATAAGTG
CTTTGCTGTAATTAATAAACTCAACAGTTCAAAGCTTCTGTTACCAATATACGATCTCGA
GTTATTTAACCTTCGAAACAACATCGAGGTAATTACGATCTTCTGCCGGTAAAAAAATGA
GGAATCACCGCGAAAGTTACGAATCCGAGGCCGATGAGAACGGCAACAATATGGCGTCTG
ATTTCTATGAGAGAAGTGGCGTGAACGAGCCGGGAAAATTCCCAAAGGTTTGGCGGGATC
AACCAAAGCCAAGAGTAAAAAAACGAATCAGTGACTTCTCGGTTAAATATCTGCTTGATC
AGAATGTTACTTCACCAACCGACAGCGGTTACGGCAGCGGGAGTCCAAGTCCAGACCAGA
ATATGATCTCAAACTCGATGACGTCACCGGTGCTTCATAAAACCGCTAGTGGTGCTAGAG
AGTCGGATAGCAAGGATGTTGGGTTTTGTGAAGAATCTGCTGCAGTGCCTGATGTGCATA
AATATTACCAGAATGTTCTATTTGCAATGAACTCGCATTTCTTACACCAACATCGGGCCG
CACCTGAGGTACCTGCGGGGTTTGCAAGCTCTGGTATGCCGGCACCAACATTTCGACCCG
ACTACTACATGATGCAGATGGGGAAGTTATTATGGGAGAACGCGGTGCGGAAAGCGGCGA
TCGCTCCTTCTACCAACCAAACTTTTGTTGAAATCAAAAATGAATCTTTGTCGCCTTCGA
GTATTCCAAGCGTTTCACCGCATTCAACATACAGCGAACACCACCAGTCAACTAATGTAT
TGCGCTGCAAACGAGGTCCGAATTCTGGCTACAAGTCCCTGCCTTATCCCCTCCGCAAAG
AAAACGGAAAGATTGTGTACGAATGCAACGTTTGCTATAAGAGGTTCGGACAGCTGTCCA
ATTTAAAAGTTCATCTACGAGTTCACACCGGCGAGCGTCCGTTCAAATGCGCTACTTGTT
CAAAAGGCTTCACACAGTTGGCTCATCTACAGAAACACAACCTTGTACACACTGGTGAAA
AACCACACGAATGTAATGTCTGTAACAAACGCTTCAGCTCGACGAGTAATCTCAAAACTC
ACATGAGACTCCACAACAGTAACGAATACACATGTGCTGGGTTAAACTCAATGCTCGGTA
ATGTCCCATCGTCACTTCAGTCTGCACTACACTTTCATACGGGCCAATCACCGTCGCTGA
GGAGATGGTATTAGCCAATCAAACTTGGTTAATTAAAAATTCAATTTTGGGAAGAATTGG
ACATGAGAATAAAACAACTACACCCATTGGCCTTGTTCCGTTTGTTTCAAATATGTTTTA
TGCGCATCTTCAAAGCATATGTTCAAATAGGTATATAATGAATTGGTCACAACCGCCTGA
TGTGAATTAGTGGAGAAATTGGTCCGAAAAGTTTTTGT
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[245-293] 1.25E-13 - T[282-334] 3.13E-17 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[256-283] 16.228 - T[284-311] 15.687 - T[312-339] 12.736 |
| SMART |
Znf_C2H2_type (IPR013087) - T[256-278] 0.0031 - T[284-306] 0.086 - T[312-334] 2.5E-4 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[258-278] . - T[286-306] . - T[314-334] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZN235_HUMAN | 44.186 % | 111 | 8.99E-27 |
| PRDM1_HUMAN | 74.576 % | 189 | 1.28E-53 |
| ZN683_HUMAN | 59.843 % | 161 | 6.18E-45 |