- Transcript 'KH2012:KH.C12.53.v2....'
Transcript Model
Transcript Id
KH2012:KH.C12.53.v2.B.SL1-1
Possible name(s)
SRBD1; SUPT6H
Gene model
Location
KhC12 [2,651,582 / 2,673,149]
Amino acid sequence
Length: 1,597
>KH.C12.53.v2.B.SL1-1
IVNMSDYVENEAEESSDEDYDVARTKPALDYDSEDEEENEKEVDEEGNIAGLVDDDVEEE
EEEGDEDDSDISSDADEEEQPVEEKQRKKRSARDLRLEDDDFDLIEENLGVKLKKRKKFS
RLRTVSSDEDVSEDETDTRQAIRDELFHDDDTDTPQVGNLSVYPAQVEPEVPLLGDDDEE
GMSDESDVNDFIVDDNGEPISKPQKGQKRRSKGDSGFYTDTDAEIRNADVPERFQLRTIP
VKPAEESELELESEWIYKYCFVEPSISKQDAIEDLGSTFSSSTLSTLNRKPPSCVGKIQD
TLNFMRNQQYEAPFISFYRKEYVEPELNIHDLFKIYHWDEKWTQMNVRKASVTRLMQKMQ
TFQYEQISADPDKPLGDNVRALTDADIERVQGIQTMEEYHDIYRHFLLHYGRDVPKMQNA
LRIQRQRERAENGLNPDEDAPSLASDLKQASRRHMYTVCLDAGIGGVANKFGLTPEQFGE
NLRDNYQRHETEQYPAEPMDLAEDFLCPQFSTKEAVLEGARYMVAMQLAREPLVRQCVRQ
TFNERAKISVQPTKKGKKEIDEGHPCFSYKWLQNKPVKDLSGPQFLHIKNAETENLVTMT
IHIDMHGTVGSQTYFEEIKQLYYRDEFSHLVQEWNNQRSKVVEFMLQNIIYPEMTKELKT
LLYDEAKNGIKEHCALKLRSYLSVAPYQLEEREYDEDEEEERKGTVVMAIAYSEERDSAM
FAAVVSGLGEVVDFLKLPNMRFRRKSHIEEEAKRKKSDMDQLKKFMSKRKPHVVVIGAED
RLATTIQEDVQQCVTDLEQEGVISNVAVELMDNELSSVYASTQRAQADFRDFPVELRQAI
SLARRLQDPMLEFSQLCTADQDLMCLKLHPLQDQLNKDELLEALVEEFVFRACEVGVDVN
RAITHPHTATVVQFVCGLGPRKAAHLLKVLKQKNGRLENRSNLVTVCKMGPKIFINCAGF
IKIDTKSIMEDSTDAYIEILDGLRVHPETYEWARKMAVDALEYDESAEDANPSSALVEIL
ESPERLKDLDLDAFAEELERQGYGNKGITLYDIRNELNSQYKDFRTPYRSSTAEEKFEMV
TKETLSNFKEGKMITCRVTGIAHRRPKSEQLDQAEPHKDEETGMWNCSFCKTGGFAELSE
VWAHLDNGECLGRAVGVKVRLEGGITGFIPTDKLSDKPVSNPEERVHIGMTIHCRITKID
IERFQVDLTCRGSDLRDDAGSWKQQLDTYYGFEQETLDKKKLEDSNKKSNRTTYIKRVIA
HPSFHNIDFKSAEKRMQDMDQGSDHLTATWKVSEGVFAHIDIREEKKENAFSLGRSLWIG
NEEFEDLDEIIARFIQPMAANARDLIGHKNFREVGGKKELVEDLLKQAKKSAPFRIPYFI
SASKSLPGKFLLSYMPRARSKHEYVSINPDGYRYRSQNFTSLNQVFKWFKEHFRDPIPTH
LMNRTPAGGNSVSINTPKQRTPSIRQTPRTPKETPQQPHTPGYPYTPNAPYITPSGSYRG
QRSPAASMLPPKSIPPAKWATPSMTPKRTPKSSGRTPVPSNADWGSRAQEWAKQQQGLKS
PHMTPTTPKGPRTPASSYAGTPRTPQNRTPRGQRTPY
Nucleotide sequence
Length: 4,957
>KH2012:KH.C12.53.v2.B.SL1-1
CTGCTTTACTTTTTGGACGAGTTTTGGTTTGTTACAATTGTTAATAAGTTGACCTGAATT
GTAAATATGTCGGATTACGTGGAAAATGAGGCGGAAGAATCGTCAGATGAGGATTATGAC
GTTGCAAGGACGAAACCTGCCTTGGATTACGACAGCGAGGATGAAGAAGAAAATGAAAAA
GAGGTTGATGAGGAAGGCAACATTGCTGGACTCGTGGATGATGATGTTGAAGAAGAAGAA
GAGGAAGGAGATGAAGATGACAGCGATATTTCATCCGATGCTGATGAGGAGGAACAACCA
GTAGAAGAAAAACAAAGGAAAAAAAGAAGCGCTCGAGATTTGCGACTTGAAGATGACGAC
TTTGACCTTATCGAGGAAAACTTGGGAGTAAAATTGAAAAAAAGAAAAAAGTTTTCAAGA
TTACGAACTGTGTCCTCGGACGAGGATGTAAGTGAAGATGAAACGGATACGAGGCAAGCG
ATCCGGGATGAACTATTTCATGATGATGATACTGATACTCCTCAGGTGGGAAATTTATCT
GTGTATCCCGCTCAAGTTGAGCCCGAGGTTCCTCTTCTTGGAGATGATGATGAGGAAGGG
ATGTCAGATGAAAGTGACGTGAATGACTTCATTGTAGATGATAACGGAGAACCAATAAGT
AAACCTCAGAAAGGACAGAAGAGACGAAGCAAAGGGGACTCAGGGTTTTACACGGATACA
GATGCAGAAATAAGAAACGCAGATGTTCCTGAAAGATTTCAACTTCGTACAATACCAGTC
AAGCCAGCAGAAGAAAGTGAACTTGAACTCGAATCTGAGTGGATTTATAAATACTGCTTT
GTGGAACCATCTATTTCAAAACAGGATGCCATTGAAGATTTGGGTTCGACCTTCAGCTCA
TCCACTTTATCAACACTTAACCGCAAACCACCAAGCTGTGTGGGAAAAATACAGGACACT
TTAAATTTTATGAGGAACCAGCAATATGAAGCTCCCTTTATCAGTTTCTACAGGAAGGAA
TACGTGGAACCTGAACTTAATATTCATGACTTGTTTAAAATATATCATTGGGATGAAAAA
TGGACACAAATGAACGTTCGTAAAGCGAGTGTTACAAGGTTAATGCAGAAGATGCAAACT
TTTCAATACGAACAGATATCTGCGGACCCGGATAAACCATTGGGGGATAATGTAAGAGCG
CTAACAGATGCGGATATAGAGAGAGTACAAGGCATTCAAACCATGGAGGAATATCACGAT
ATATATCGACACTTTCTACTTCATTATGGGAGGGATGTACCTAAGATGCAGAATGCTCTT
CGTATCCAACGGCAACGAGAGCGAGCAGAAAACGGATTAAACCCCGATGAGGATGCTCCG
TCATTAGCGAGTGATCTAAAGCAAGCTTCACGTAGACACATGTACACCGTGTGTCTTGAT
GCTGGCATTGGGGGAGTTGCGAACAAATTCGGTTTAACACCTGAGCAGTTTGGTGAGAAT
CTAAGAGACAATTATCAAAGGCATGAAACTGAGCAATATCCTGCAGAACCTATGGATCTG
GCAGAGGACTTTTTGTGCCCACAGTTTTCAACTAAAGAAGCAGTGTTAGAAGGGGCAAGA
TACATGGTAGCCATGCAGTTAGCAAGGGAACCACTAGTCCGACAATGTGTCCGTCAAACT
TTTAACGAACGAGCAAAAATATCCGTTCAACCGACAAAAAAAGGAAAAAAGGAAATAGAC
GAAGGACATCCTTGTTTTTCTTATAAATGGCTTCAAAACAAACCAGTGAAAGACCTGAGT
GGTCCACAATTTCTTCATATTAAAAATGCTGAAACAGAAAACCTTGTAACAATGACAATC
CATATTGATATGCACGGAACCGTAGGAAGTCAAACTTATTTTGAAGAAATAAAACAACTT
TATTACAGGGATGAGTTCAGTCACTTGGTGCAGGAATGGAACAACCAACGAAGTAAAGTT
GTTGAGTTTATGCTGCAGAATATCATTTACCCTGAGATGACAAAGGAACTGAAAACCCTG
CTGTATGACGAGGCTAAAAATGGAATAAAGGAGCACTGTGCGTTGAAACTTCGTTCATAT
CTCTCTGTCGCCCCCTACCAGTTAGAGGAGCGGGAATATGATGAGGACGAAGAAGAAGAA
AGGAAGGGAACGGTTGTCATGGCGATCGCTTATTCAGAAGAAAGAGACTCGGCAATGTTT
GCAGCGGTTGTATCAGGACTTGGTGAAGTGGTGGATTTCCTTAAACTTCCTAATATGAGG
TTTAGGAGGAAGTCCCACATAGAGGAAGAAGCAAAGAGAAAGAAGAGTGACATGGATCAA
CTGAAAAAGTTCATGTCGAAACGAAAACCTCACGTTGTTGTCATTGGGGCAGAGGATAGG
CTTGCAACTACTATACAAGAAGATGTACAGCAGTGCGTGACCGACCTCGAGCAGGAGGGG
GTGATATCTAACGTAGCAGTTGAATTGATGGATAACGAATTATCATCCGTGTATGCTTCA
ACACAACGTGCACAGGCTGACTTCCGGGATTTTCCCGTCGAATTACGACAAGCAATATCG
TTGGCTCGTCGTCTTCAAGATCCAATGTTAGAATTCTCTCAGCTTTGCACTGCTGATCAA
GACTTAATGTGTTTAAAACTTCACCCATTACAGGACCAACTTAACAAAGACGAACTGCTT
GAAGCTTTAGTCGAAGAGTTTGTATTCCGTGCGTGTGAAGTAGGTGTGGATGTAAACAGA
GCTATAACCCATCCACACACGGCTACTGTCGTTCAATTTGTGTGCGGTCTCGGCCCAAGA
AAAGCAGCTCATTTATTGAAGGTTTTAAAACAGAAAAACGGACGTTTGGAAAATCGCTCA
AATCTCGTCACTGTGTGTAAGATGGGACCAAAGATATTTATTAACTGCGCTGGTTTTATA
AAGATTGATACTAAATCTATAATGGAAGACAGCACTGATGCTTACATCGAGATCCTCGAC
GGACTCCGCGTACATCCGGAGACTTACGAGTGGGCGAGGAAGATGGCAGTCGATGCTCTG
GAGTACGATGAGTCAGCGGAAGATGCAAATCCCTCGTCTGCTCTCGTTGAGATCCTTGAA
TCTCCCGAGAGGTTAAAAGATCTTGATCTGGATGCTTTTGCAGAGGAACTTGAGAGACAG
GGTTATGGAAACAAAGGCATCACACTATACGACATTCGTAACGAGCTCAACTCTCAATAC
AAAGATTTCCGAACCCCATATCGTTCTTCAACTGCGGAGGAAAAATTTGAAATGGTGACG
AAAGAAACTTTGTCAAATTTTAAAGAAGGTAAAATGATCACATGTCGTGTTACCGGCATC
GCGCATCGTCGACCGAAGTCCGAGCAACTCGATCAAGCGGAACCACATAAAGACGAGGAG
ACGGGAATGTGGAATTGTTCGTTTTGTAAAACGGGAGGATTTGCTGAACTCAGCGAGGTG
TGGGCCCATCTTGATAATGGAGAATGCCTAGGTCGAGCAGTTGGGGTTAAAGTTCGTCTC
GAAGGTGGAATCACTGGGTTTATTCCAACAGATAAACTGAGTGACAAGCCAGTCTCTAAT
CCTGAAGAAAGAGTTCATATCGGCATGACGATCCACTGTCGCATCACAAAGATTGACATC
GAGAGATTCCAAGTCGACCTTACATGTCGGGGTTCGGACTTACGAGATGACGCGGGGTCG
TGGAAACAACAGCTCGATACCTATTATGGTTTTGAACAAGAAACTTTGGATAAAAAGAAA
TTAGAAGATTCGAATAAAAAGTCAAACAGAACGACATATATAAAGCGAGTAATAGCCCAT
CCCTCATTCCATAATATTGACTTCAAAAGTGCAGAGAAGCGAATGCAAGATATGGACCAA
GGTTCTGACCATCTCACAGCAACATGGAAAGTTTCAGAAGGTGTTTTCGCTCATATTGAT
ATCAGGGAAGAGAAAAAAGAAAATGCTTTCAGTCTTGGAAGGTCATTGTGGATCGGCAAT
GAGGAATTCGAAGACCTCGACGAGATCATCGCTCGTTTCATCCAGCCAATGGCAGCAAAC
GCTCGAGATCTCATTGGACACAAAAACTTTCGGGAGGTCGGAGGGAAAAAGGAACTCGTT
GAAGATTTGTTGAAACAAGCGAAGAAATCCGCTCCATTCAGGATCCCATACTTTATTTCT
GCTTCCAAATCACTGCCAGGTAAGTTCTTATTGTCGTACATGCCGAGAGCTCGTTCAAAA
CACGAGTACGTGTCAATCAACCCCGATGGGTATCGCTACAGAAGTCAGAACTTTACGTCG
CTCAACCAAGTATTTAAGTGGTTTAAAGAACATTTCCGAGACCCCATCCCAACACATTTA
ATGAACCGAACGCCGGCGGGTGGGAACAGTGTTTCCATAAATACTCCGAAACAAAGAACG
CCTTCAATACGACAAACACCAAGGACTCCTAAAGAGACCCCACAACAGCCCCACACCCCA
GGTTACCCCTACACCCCTAACGCCCCGTACATTACCCCAAGTGGTAGTTACAGGGGTCAG
AGGTCCCCGGCAGCGAGCATGTTGCCCCCGAAGTCAATACCCCCGGCAAAGTGGGCCACA
CCCAGTATGACCCCAAAACGAACCCCTAAATCAAGCGGCAGGACACCCGTTCCTTCCAAC
GCAGACTGGGGTAGCAGAGCACAGGAATGGGCAAAGCAGCAACAAGGGTTAAAAAGTCCG
CATATGACCCCGACCACACCTAAAGGGCCCCGTACCCCAGCTAGTAGCTATGCGGGGACC
CCAAGAACCCCACAAAATAGAACTCCGCGGGGCCAGCGCACCCCTTATTGAAAGGGGGGA
TTCAAAAAGACTTTCGTAAATCGTGGAATCGTGAAATTGCAAAATAAGTTGTTTTCCCAA
TTTGGAAAGATTTCTTGAAAATAAATTGTACACAAGC
| PIRSF |
TF_Spt6 (IPR017072) - T[2-216] 3.8E-9 - T[211-1482] 0.0 |
| PANTHER |
TF_Spt6 (IPR017072) - T[4-1437] 0.0 |
| Pfam |
Spt6_acidic_N_dom (IPR028083) - T[32-127] 1.5E-10 |
| Pfam |
Spt6_HTH_DNA-bd_dom (IPR028088) - T[242-361] 6.6E-23 |
| Pfam |
Spt6_YqgF (IPR028231) - T[703-857] 6.9E-37 |
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[703-858] 2.33E-26 |
| SMART |
YqgF/RNaseH-like_dom (IPR006641) - T[705-820] 9.6E-18 |
| Pfam |
Spt6_HHH (IPR032706) - T[861-964] 8.9E-40 |
| SUPERFAMILY |
RuvA_2-like (IPR010994) - T[872-964] 9.78E-12 |
| Pfam |
Spt6_dom (IPR027999) - T[978-1084] 2.0E-32 |
| SMART |
S1_dom (IPR022967) - T[1140-1211] 2.3E-4 |
| Pfam |
S1_domain (IPR003029) - T[1155-1211] 2.6E-7 |
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[1156-1213] 1.4E-9 |
| ProSiteProfiles |
S1_domain (IPR003029) - T[1156-1211] 13.992 |
| Pfam |
Spt6_SH2 (IPR035420) - T[1229-1432] 1.0E-67 |
| Gene3D |
SH2_dom_sf (IPR036860) - T[1247-1343] 1.5E-29 - T[1344-1436] 4.4E-5 |
| CDD |
Spt6_SH2_N (IPR035019) - T[1260-1334] 3.07947E-33 |
| CDD |
Spt6_SH2_C (IPR035018) - T[1343-1433] 1.47725E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPT6H_HUMAN | 52.889 % | 1523 | 0 |