- Region 'REG00001222' >
- Clone 'cien174142' >
- Transcript 'KH2012:KH.S215.4.v1....' >
- Transcript 'KH2012:KH.C12.670.v1...'
Transcript Model
Transcript Id
KH2012:KH.C12.670.v1.R.ND1-1
Possible name(s)
CSMD1; CSMD2; MASP1
Gene model
Location
KhC12 [3,770,754 / 3,776,040]
Amino acid sequence
Length: 680
>KH.C12.670.v1.R.ND1-1
TWLSECMALWWPCRSAVFQVFALLWLCSVQQALGDVCEPSNGTLLFDRYTSKLIPPERRF
MLFASDTLGVNSKSVETLDFDHAKCIEAGNETVVIRPCNSSIVSQKWYQLHNQLVSIPIG
KCIASEPNNFDTDLQLKNCRTGQPSQEWSCLHHNSTEVLLSSAGRFLAVSSGTVHTVDTK
PANWRWKIADNSGKVLEKNPAAKRLCLTAASACPFPKQGVRSYFVTSDTALAKVMHPPKE
LVLKHLGDTIRMCYAVGNNILAVCPLGFVALGSQTKQHQEKTCLAGGVWSEQQPLHCVRR
SCGRPDEGHHSTFIAGAIFMATLFTTHVMRNTSQTDHHEYADRTEDGQVLLFTANFYLTG
NSGTVTSPNYPQPYPASKNCEWKIEVEQGLRVVIWFRDFFIEPGSPFTGDCRHDVFYINV
GNKIKQFCGSLYPESWIAASNKVKLVFCSDVSGNSKGFKIDYTSWNSSKCYKPLCPNFSM
SANPVAPVRNGTFPDEEDNSHVYIGTEYANYFIEIVYGVLVISAIFLIAMLIVSHFFNDI
RTRIHPVSPTSSEEDFYDETERHRRLAQRRMTTMFDPVTIAPKITSDGVFVTQQWMADID
SMSSHSQGSVILSEPCLDRQHLPNVVPETQSNPLPVKIQISDADNKDLSEIKENRQVSKP
PEKGKKTAGAGGVRFSINGN
Nucleotide sequence
Length: 2,301
>KH2012:KH.C12.670.v1.R.ND1-1
ATACATGGCTATCAGAATGCATGGCGTTGTGGTGGCCATGTCGTTCAGCTGTTTTTCAAG
TTTTTGCCCTGCTGTGGTTGTGTAGCGTACAGCAAGCGCTAGGCGACGTGTGCGAGCCAA
GTAACGGAACCCTTCTCTTCGACCGGTATACGAGTAAACTCATTCCGCCCGAAAGAAGGT
TTATGCTTTTTGCGTCCGACACCTTAGGAGTAAATTCCAAATCTGTCGAGACTTTAGATT
TTGACCATGCTAAGTGTATTGAAGCAGGAAATGAAACAGTAGTAATACGTCCTTGCAACA
GCAGCATCGTATCGCAAAAGTGGTACCAGCTTCATAACCAACTTGTCAGTATACCTATCG
GCAAATGTATTGCAAGCGAACCGAACAATTTCGATACCGATCTTCAGTTGAAGAATTGTA
GAACGGGCCAACCAAGTCAAGAATGGTCGTGTTTGCATCATAACAGCACAGAAGTATTGT
TGTCAAGCGCTGGACGTTTCCTGGCTGTCAGCTCTGGTACTGTACATACTGTGGACACGA
AACCAGCAAACTGGCGATGGAAAATTGCGGACAATTCTGGAAAAGTACTTGAGAAAAATC
CGGCCGCTAAAAGGTTATGTCTTACTGCAGCATCGGCATGTCCTTTTCCAAAGCAAGGTG
TTCGATCTTATTTCGTAACATCTGATACTGCACTAGCAAAGGTCATGCACCCGCCAAAGG
AATTGGTTCTAAAACACTTGGGCGACACCATCAGGATGTGTTATGCTGTTGGAAACAACA
TTCTTGCTGTATGCCCATTGGGTTTCGTTGCTCTTGGTTCCCAAACCAAACAACACCAAG
AGAAAACTTGCTTGGCTGGGGGTGTATGGTCAGAACAACAACCTTTACATTGTGTTAGGC
GGAGCTGTGGGCGACCAGATGAAGGCCATCATTCAACGTTTATCGCAGGGGCTATCTTTA
TGGCGACGTTGTTCACTACACATGTGATGCGGAATACATCCCAGACCGATCATCACGAAT
ATGCGGACCGGACGGAAGATGGTCAGGTTTTGCTCTTTACTGCAAACTTTTATTTGACTG
GTAACTCTGGAACCGTGACGTCACCAAATTACCCTCAACCGTATCCGGCTTCAAAGAACT
GCGAGTGGAAAATAGAAGTAGAACAAGGTCTTCGAGTCGTCATCTGGTTTCGAGACTTCT
TCATTGAACCTGGATCTCCCTTTACTGGAGATTGTCGGCACGATGTGTTTTATATAAATG
TAGGTAACAAAATCAAACAATTTTGTGGTTCTTTGTATCCCGAATCATGGATTGCTGCGA
GTAATAAAGTGAAGTTGGTATTCTGTTCAGATGTTTCGGGCAATAGTAAAGGTTTCAAGA
TCGACTACACTTCTTGGAATAGTAGTAAGTGCTACAAACCACTTTGCCCCAACTTTAGCA
TGTCCGCCAATCCGGTTGCACCAGTTCGAAACGGGACTTTCCCAGACGAAGAGGACAACT
CGCATGTCTACATAGGCACTGAATACGCAAACTACTTTATTGAGATTGTTTATGGGGTAC
TCGTGATATCAGCCATCTTCCTTATCGCGATGCTCATTGTGTCGCATTTCTTTAACGACA
TCCGGACACGAATACATCCGGTATCCCCCACTTCCTCAGAAGAGGACTTTTACGATGAAA
CGGAACGTCATCGCCGTCTCGCTCAGCGGAGGATGACAACTATGTTTGATCCCGTCACAA
TTGCTCCGAAAATTACGTCGGACGGTGTCTTCGTTACACAGCAATGGATGGCAGATATTG
ATTCTATGAGCTCACACTCGCAGGGTTCTGTTATACTCAGTGAACCATGTCTGGATAGAC
AACATTTACCCAACGTTGTGCCTGAAACCCAATCTAATCCTCTTCCTGTCAAGATTCAAA
TAAGCGACGCCGATAACAAAGATTTATCAGAAATTAAAGAAAATCGCCAAGTATCCAAGC
CACCTGAAAAGGGAAAAAAGACCGCCGGTGCTGGGGGTGTACGCTTTAGCATCAACGGGA
ATTAAATCTCCCGCCCGGGTCTTCGGGGCATTCTTTGCCGCAAAACCCAACGGCAACTTC
GGCGGGTGTGACTCCTGCGACTCCTACATATAAATCAAGTATTTCTAAACGCTGAATAAA
CCATGGCAGGTGCAAACCTCGACGAGAAAGCTTGATGAAGTAGCACGTCGCTTAAATACG
AACAAAGAGGCTTTTGCGTATCCTTCATGATCGTACGATAATTGTTCTACCTGGGTGTCC
AATAAACACATGCGTTTGAAA
| ProSiteProfiles |
Ricin_B_lectin (IPR000772) - T[71-189] 13.375 |
| SUPERFAMILY |
Ricin_B-like_lectins (IPR035992) - T[80-192] 1.61E-10 |
| CDD |
Ricin_B_lectin (IPR000772) - T[84-173] 1.34965E-5 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[251-305] 4.74E-5 |
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[354-464] 2.6E-26 |
| SMART |
CUB_dom (IPR000859) - T[354-465] 1.5E-22 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[354-465] 21.768 |
| CDD |
CUB_dom (IPR000859) - T[357-464] 2.95212E-26 |
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[358-465] 1.57E-26 |
| Pfam |
CUB_dom (IPR000859) - T[358-462] 1.1E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|