- Transcript 'KH2012:KH.C12.72.v3....' >
- EST 'AHC0AAA223YH13_RM1' >
- Transcript 'KH2012:KH.C1.250.v2....' >
- Transcript 'KH2012:KH.C3.279.v1....' >
- Transcript 'KH2012:KH.C12.72.v1....'
Transcript Model
Transcript Id
KH2012:KH.C12.72.v1.A.SL1-1
Possible name(s)
LAMC1; NTN1; NTN3
Gene model
Location
KhC12 [5,148,792 / 5,157,800]
Amino acid sequence
Length: 566
>KH.C12.72.v1.A.SL1-1
KCTFETVVLYALTMMEHVKKVGAGINQRKFMLLVVILTLLPGTMQIRPKQLSKCYAKSKN
PIECNPEFENIALKKRVEVSETCGLEGREPFCRLVEEENTVSRVCDVCEATGRRSHPASY
LTDINNKHNLTYWQSKTFQSGEDQNREVELTISFEKEYEISYIYMQFYSPRPAAMIIYKS
MNHGRTWVPYQYYAENCLRRFHKPYKREANETNEQEVLCSEDFNSLYPFSLGALVFNPKD
GRPSEDDFEHIATRASKTELRHTGVRVSGGTDILVSNPGATSTPYSFGSSSYYAINDISI
GGVCKCNGHADRCIKKKGKMVCDCKHKTTGPNCETCKAFHKDRPPKRATKTNANECIACN
CNMHAKRCRFSADLFEKSGGTSGGVCVKCRHNTHGRYCHKCKPGFYRNNKTKSMSNRRAC
RRIPVVTGATTAKPACPRTCSSSKAVRIPPAKYCKMEYAVMVRVTGKIRIGRRTSITYQV
LRVFKRGGMRLKKKEMIDIQVRDRVLQCLCPRLRVNRTYLLLGKYARSDGNLRMTIDKNS
VIISWLNKYKKMLRRVAKRARKRSKC
Nucleotide sequence
Length: 2,397
>KH2012:KH.C12.72.v1.A.SL1-1
AAGTAACTGCCATAGTGTATTGTCCTGTTAGAAATGTACCTTTGAGACTGTAGTGTTATA
TGCTCTTACTATGATGGAACATGTAAAGAAAGTTGGTGCGGGCATTAACCAAAGGAAATT
CATGCTTTTGGTTGTCATCTTAACTTTGCTGCCTGGTACGATGCAGATACGACCGAAACA
ATTAAGCAAGTGTTATGCTAAAAGCAAGAACCCGATAGAATGCAACCCTGAGTTTGAAAA
TATTGCCCTCAAGAAAAGAGTCGAAGTTTCAGAGACGTGTGGTCTTGAAGGAAGGGAGCC
TTTCTGTCGGTTGGTGGAAGAAGAGAACACGGTGTCACGTGTGTGTGACGTATGTGAGGC
CACCGGACGGCGATCCCACCCTGCTAGTTACTTGACTGATATCAACAATAAACATAACTT
GACATATTGGCAATCGAAGACCTTTCAAAGTGGGGAAGATCAGAATAGAGAAGTCGAGTT
GACGATATCTTTTGAAAAAGAATATGAGATATCTTATATTTACATGCAGTTCTATTCACC
CAGGCCCGCCGCTATGATCATTTATAAGTCAATGAACCACGGTAGAACGTGGGTACCATA
CCAATACTATGCTGAAAACTGCCTGAGAAGGTTTCATAAGCCTTATAAAAGAGAAGCGAA
TGAGACAAATGAACAAGAGGTTCTGTGTTCAGAAGATTTCAACAGTTTGTATCCGTTCAG
TCTCGGTGCTCTGGTGTTTAACCCGAAAGATGGGCGGCCTTCTGAGGATGATTTCGAACA
TATTGCTACCCGGGCAAGCAAGACTGAGTTACGGCATACAGGTGTTCGCGTGTCTGGTGG
GACAGATATTTTAGTCAGCAACCCTGGCGCTACTTCCACTCCGTATAGTTTTGGTTCTAG
CTCTTATTATGCGATCAATGATATCAGTATTGGAGGTGTTTGCAAGTGCAATGGTCACGC
TGATAGATGTATAAAGAAGAAGGGGAAGATGGTTTGTGATTGTAAACACAAGACAACGGG
ACCGAACTGCGAGACATGCAAAGCTTTTCATAAGGACCGACCGCCTAAGCGAGCTACGAA
AACAAACGCGAACGAGTGCATTGCTTGTAATTGCAATATGCACGCCAAGAGATGCCGATT
CAGCGCCGACTTATTTGAAAAGTCGGGTGGTACAAGCGGGGGAGTTTGTGTTAAGTGTAG
ACACAACACACATGGCCGATATTGCCATAAATGTAAGCCTGGATTTTACAGGAACAACAA
AACCAAGTCGATGTCGAACAGGAGAGCTTGTAGGCGAATTCCTGTTGTAACTGGCGCTAC
CACAGCTAAACCAGCTTGCCCACGAACATGTAGCAGCTCAAAAGCTGTAAGAATACCTCC
AGCTAAATATTGTAAGATGGAATACGCTGTGATGGTAAGAGTAACCGGGAAGATCAGGAT
AGGAAGAAGGACCAGCATCACTTACCAAGTACTCAGGGTGTTTAAGAGGGGAGGCATGAG
GTTGAAGAAGAAGGAGATGATTGACATCCAGGTCAGGGATCGAGTCCTACAGTGTCTATG
TCCCAGGTTGCGAGTGAACCGAACATATTTGTTGCTTGGTAAATACGCGAGGTCAGATGG
AAATCTAAGAATGACGATTGATAAAAACTCTGTCATTATCAGCTGGTTAAACAAATATAA
GAAAATGTTACGAAGGGTGGCGAAGCGAGCACGAAAACGAAGTAAATGTTGAACCTTAGC
CACCCCGGCTTTGTGTAAGAAGTGGCGCCCAAGATTCGGTTCCGAAAAAATCCGATTTCG
ACCGAAGTTTGCCGATGTGAGATTAAGGTTAAAATGGTCGTGAGGCGTTTTAACGAACTT
TATTGTTCTTTGTCAATACGCATTATGACGACAGAGACGATGACGTAAGCTGGTCGATCA
TTCAAGTGCTTTTATATTCATTGTCCCGTTTTACTTTTATATTTATTTTGTTTTTGACAC
TGTAACGCCATGTTATCTAATGTAAAACTGGGCACGTAAATACGTAACAATACAGGGGTA
TTTATATATCACATGACGTATCCGCTATTGAGAAATTCTACACAATAAATTTACCTTTAT
CCCCAAAGCAAATTTCAATTATAAGCACCTTCAATTGGCGATAAATTTAACTTCAAAACA
TCATACAAAGTAATTAGACGCATGACCATATATACAAAGACAAAGTTTTCAAAGTGGATA
CGTTTTATGATATACATCTCACCAAATTTCAAGTATTACGTCATAAATTAATGTTGTTTC
TATGTCCGATTCTATTTCGAACCCGAACGCTGCATATTTGGGTCCTTGCTCGCTTGTTTT
TCAACTTTTCGCCTTTTCATCGCGAATTAGATATTTCTTCAAGTAAAAGATCATCGT
| Gene3D |
Laminin_N_sf (IPR038684) - T[42-324] 6.4E-80 |
| SMART |
Laminin_N (IPR008211) - T[58-302] 6.0E-53 |
| ProSiteProfiles |
Laminin_N (IPR008211) - T[60-303] 43.329 |
| Pfam |
Laminin_N (IPR008211) - T[64-302] 1.0E-61 |
| SUPERFAMILY |
Galactose-bd-like_sf (IPR008979) - T[114-193] 6.38E-7 |
| SMART |
Laminin_EGF (IPR002049) - T[304-356] 8.1E-6 - T[359-420] 4.0E-8 |
| Pfam |
Laminin_EGF (IPR002049) - T[304-345] 8.8E-6 - T[359-411] 4.3E-8 |
| SUPERFAMILY |
TIMP-like_OB-fold (IPR008993) - T[430-562] 4.19E-27 |
| ProSiteProfiles |
Netrin_domain (IPR001134) - T[436-566] 22.376 |
| SMART |
Netrin_module_non-TIMP (IPR018933) - T[450-559] 1.1E-28 |
| Pfam |
Netrin_module_non-TIMP (IPR018933) - T[452-557] 9.4E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMC1_HUMAN | 34.127 % | 239 | 4.59E-68 |
| NET1_HUMAN | 35.417 % | 378 | 2.0E-124 |
| NET3_HUMAN | 31.047 % | 243 | 9.45E-73 |