- Transcript 'KH2012:KH.C12.72.v2....'
Transcript Model
Transcript Id
KH2012:KH.C12.72.v2.A.SL1-1
Possible name(s)
LAMC1; NTN1; NTN3
Gene model
Location
KhC12 [5,148,792 / 5,157,800]
Amino acid sequence
Length: 616
>KH.C12.72.v2.A.SL1-1
KCTFETVVLYALTMMEHVKKVGAGINQRKFMLLVVILTLLPGTMQIRPKQLSKCYAKSKN
PIECNPEFENIALKKRVEVSETCGLEGREPFCRLVEEENTVSRVCDVCEATGRRSHPASY
LTDINNKHNLTYWQSKTFQSGEDQNREVELTISFEKEYEISYIYMQFYSPRPAAMIIYKS
MNHGRTWVPYQYYAENCLRRFHKPYKREANETNEQEVLCSEDFNSLYPFSLGALVFNPKD
GRPSEDDFEHIATRASKTELRHTGVRVSGGTDILVSNPGATSTPYSFGSSSYYAINDISI
GGVCKCNGHADRCIKKKGKMVCDCKHKTTGPNCETCKAFHKDRPPKRATKTNANECIACN
CNMHAKRCRFSADLFEKSGGTSGGVCVKCRHNTHGRYCHKCKPGFYRNNKTKSMSNRRAC
RPCNCNPVGSLGRHCDQVTGQCICKQHVTRRRCNYCVKGYKQTDSPDAPCARIPVVTGAT
TAKPACPRTCSSSKAVRIPPAKYCKMEYAVMVRVTGKIRIGRRTSITYQVLRVFKRGGMR
LKKKEMIDIQVRDRVLQCLCPRLRVNRTYLLLGKYARSDGNLRMTIDKNSVIISWLNKYK
KMLRRVAKRARKRSKC
Nucleotide sequence
Length: 2,547
>KH2012:KH.C12.72.v2.A.SL1-1
AAGTAACTGCCATAGTGTATTGTCCTGTTAGAAATGTACCTTTGAGACTGTAGTGTTATA
TGCTCTTACTATGATGGAACATGTAAAGAAAGTTGGTGCGGGCATTAACCAAAGGAAATT
CATGCTTTTGGTTGTCATCTTAACTTTGCTGCCTGGTACGATGCAGATACGACCGAAACA
ATTAAGCAAGTGTTATGCTAAAAGCAAGAACCCGATAGAATGCAACCCTGAGTTTGAAAA
TATTGCCCTCAAGAAAAGAGTCGAAGTTTCAGAGACGTGTGGTCTTGAAGGAAGGGAGCC
TTTCTGTCGGTTGGTGGAAGAAGAGAACACGGTGTCACGTGTGTGTGACGTATGTGAGGC
CACCGGACGGCGATCCCACCCTGCTAGTTACTTGACTGATATCAACAATAAACATAACTT
GACATATTGGCAATCGAAGACCTTTCAAAGTGGGGAAGATCAGAATAGAGAAGTCGAGTT
GACGATATCTTTTGAAAAAGAATATGAGATATCTTATATTTACATGCAGTTCTATTCACC
CAGGCCCGCCGCTATGATCATTTATAAGTCAATGAACCACGGTAGAACGTGGGTACCATA
CCAATACTATGCTGAAAACTGCCTGAGAAGGTTTCATAAGCCTTATAAAAGAGAAGCGAA
TGAGACAAATGAACAAGAGGTTCTGTGTTCAGAAGATTTCAACAGTTTGTATCCGTTCAG
TCTCGGTGCTCTGGTGTTTAACCCGAAAGATGGGCGGCCTTCTGAGGATGATTTCGAACA
TATTGCTACCCGGGCAAGCAAGACTGAGTTACGGCATACAGGTGTTCGCGTGTCTGGTGG
GACAGATATTTTAGTCAGCAACCCTGGCGCTACTTCCACTCCGTATAGTTTTGGTTCTAG
CTCTTATTATGCGATCAATGATATCAGTATTGGAGGTGTTTGCAAGTGCAATGGTCACGC
TGATAGATGTATAAAGAAGAAGGGGAAGATGGTTTGTGATTGTAAACACAAGACAACGGG
ACCGAACTGCGAGACATGCAAAGCTTTTCATAAGGACCGACCGCCTAAGCGAGCTACGAA
AACAAACGCGAACGAGTGCATTGCTTGTAATTGCAATATGCACGCCAAGAGATGCCGATT
CAGCGCCGACTTATTTGAAAAGTCGGGTGGTACAAGCGGGGGAGTTTGTGTTAAGTGTAG
ACACAACACACATGGCCGATATTGCCATAAATGTAAGCCTGGATTTTACAGGAACAACAA
AACCAAGTCGATGTCGAACAGGAGAGCTTGTAGGCCGTGTAACTGCAATCCGGTGGGCTC
GCTGGGGAGGCATTGCGACCAGGTTACCGGTCAATGTATATGCAAGCAACACGTTACGAG
AAGGAGGTGCAACTATTGTGTAAAAGGCTACAAGCAGACTGATTCCCCCGACGCACCCTG
CGCCAGAATTCCTGTTGTAACTGGCGCTACCACAGCTAAACCAGCTTGCCCACGAACATG
TAGCAGCTCAAAAGCTGTAAGAATACCTCCAGCTAAATATTGTAAGATGGAATACGCTGT
GATGGTAAGAGTAACCGGGAAGATCAGGATAGGAAGAAGGACCAGCATCACTTACCAAGT
ACTCAGGGTGTTTAAGAGGGGAGGCATGAGGTTGAAGAAGAAGGAGATGATTGACATCCA
GGTCAGGGATCGAGTCCTACAGTGTCTATGTCCCAGGTTGCGAGTGAACCGAACATATTT
GTTGCTTGGTAAATACGCGAGGTCAGATGGAAATCTAAGAATGACGATTGATAAAAACTC
TGTCATTATCAGCTGGTTAAACAAATATAAGAAAATGTTACGAAGGGTGGCGAAGCGAGC
ACGAAAACGAAGTAAATGTTGAACCTTAGCCACCCCGGCTTTGTGTAAGAAGTGGCGCCC
AAGATTCGGTTCCGAAAAAATCCGATTTCGACCGAAGTTTGCCGATGTGAGATTAAGGTT
AAAATGGTCGTGAGGCGTTTTAACGAACTTTATTGTTCTTTGTCAATACGCATTATGACG
ACAGAGACGATGACGTAAGCTGGTCGATCATTCAAGTGCTTTTATATTCATTGTCCCGTT
TTACTTTTATATTTATTTTGTTTTTGACACTGTAACGCCATGTTATCTAATGTAAAACTG
GGCACGTAAATACGTAACAATACAGGGGTATTTATATATCACATGACGTATCCGCTATTG
AGAAATTCTACACAATAAATTTACCTTTATCCCCAAAGCAAATTTCAATTATAAGCACCT
TCAATTGGCGATAAATTTAACTTCAAAACATCATACAAAGTAATTAGACGCATGACCATA
TATACAAAGACAAAGTTTTCAAAGTGGATACGTTTTATGATATACATCTCACCAAATTTC
AAGTATTACGTCATAAATTAATGTTGTTTCTATGTCCGATTCTATTTCGAACCCGAACGC
TGCATATTTGGGTCCTTGCTCGCTTGTTTTTCAACTTTTCGCCTTTTCATCGCGAATTAG
ATATTTCTTCAAGTAAAAGATCATCGT
| Gene3D |
Laminin_N_sf (IPR038684) - T[42-324] 7.9E-80 |
| SMART |
Laminin_N (IPR008211) - T[58-302] 6.0E-53 |
| ProSiteProfiles |
Laminin_N (IPR008211) - T[60-303] 43.329 |
| Pfam |
Laminin_N (IPR008211) - T[64-302] 1.2E-61 |
| SUPERFAMILY |
Galactose-bd-like_sf (IPR008979) - T[114-193] 7.23E-7 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[304-358] 10.007 - T[359-422] 10.255 - T[423-472] 15.834 |
| Pfam |
Laminin_EGF (IPR002049) - T[304-345] 9.8E-6 - T[359-411] 4.8E-8 - T[423-465] 1.7E-8 |
| SMART |
Laminin_EGF (IPR002049) - T[304-356] 8.1E-6 - T[359-420] 4.0E-8 - T[423-470] 1.3E-9 |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[386-420] . |
| SUPERFAMILY |
TIMP-like_OB-fold (IPR008993) - T[480-612] 4.71E-27 |
| ProSiteProfiles |
Netrin_domain (IPR001134) - T[486-616] 22.376 |
| SMART |
Netrin_module_non-TIMP (IPR018933) - T[500-609] 1.1E-28 |
| Pfam |
Netrin_module_non-TIMP (IPR018933) - T[502-607] 1.1E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMC1_HUMAN | 34.642 % | 271 | 2.39E-78 |
| NET1_HUMAN | 40.278 % | 459 | 2.12E-155 |
| NET3_HUMAN | 34.664 % | 321 | 5.1E-102 |