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TRANSCRIPT CARD

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  1. Molecular Tool 'FOG::Nodal' > 
  2. Transcript 'KH2012:KH.C12.72.v3....'

Transcript Model

Transcript Id

KH2012:KH.C12.72.v3.A.SL2-1

Possible name(s)

LAMC1; NTN1; NTN3

Gene model

KH2012:KH.C12.72

Location

KhC12 [5,148,792 / 5,151,639]

Sequences

Amino acid sequence

Length: 194

>KH.C12.72.v3.A.SL2-1
CNCNPVGSLGRHCDQVTGQCICKQHVTRRRCNYCVKGYKQTDSPDAPCARIPVVTGATTA
KPACPRTCSSSKAVRIPPAKYCKMEYAVMVRVTGKIRIGRRTSITYQVLRVFKRGGMRLK
KKEMIDIQVRDRVLQCLCPRLRVNRTYLLLGKYARSDGNLRMTIDKNSVIISWLNKYKKM
LRRVAKRARKRSKC

Nucleotide sequence

Length: 1,252

>KH2012:KH.C12.72.v3.A.SL2-1
CGTGTAACTGCAATCCGGTGGGCTCGCTGGGGAGGCATTGCGACCAGGTTACCGGTCAAT
GTATATGCAAGCAACACGTTACGAGAAGGAGGTGCAACTATTGTGTAAAAGGCTACAAGC
AGACTGATTCCCCCGACGCACCCTGCGCCAGAATTCCTGTTGTAACTGGCGCTACCACAG
CTAAACCAGCTTGCCCACGAACATGTAGCAGCTCAAAAGCTGTAAGAATACCTCCAGCTA
AATATTGTAAGATGGAATACGCTGTGATGGTAAGAGTAACCGGGAAGATCAGGATAGGAA
GAAGGACCAGCATCACTTACCAAGTACTCAGGGTGTTTAAGAGGGGAGGCATGAGGTTGA
AGAAGAAGGAGATGATTGACATCCAGGTCAGGGATCGAGTCCTACAGTGTCTATGTCCCA
GGTTGCGAGTGAACCGAACATATTTGTTGCTTGGTAAATACGCGAGGTCAGATGGAAATC
TAAGAATGACGATTGATAAAAACTCTGTCATTATCAGCTGGTTAAACAAATATAAGAAAA
TGTTACGAAGGGTGGCGAAGCGAGCACGAAAACGAAGTAAATGTTGAACCTTAGCCACCC
CGGCTTTGTGTAAGAAGTGGCGCCCAAGATTCGGTTCCGAAAAAATCCGATTTCGACCGA
AGTTTGCCGATGTGAGATTAAGGTTAAAATGGTCGTGAGGCGTTTTAACGAACTTTATTG
TTCTTTGTCAATACGCATTATGACGACAGAGACGATGACGTAAGCTGGTCGATCATTCAA
GTGCTTTTATATTCATTGTCCCGTTTTACTTTTATATTTATTTTGTTTTTGACACTGTAA
CGCCATGTTATCTAATGTAAAACTGGGCACGTAAATACGTAACAATACAGGGGTATTTAT
ATATCACATGACGTATCCGCTATTGAGAAATTCTACACAATAAATTTACCTTTATCCCCA
AAGCAAATTTCAATTATAAGCACCTTCAATTGGCGATAAATTTAACTTCAAAACATCATA
CAAAGTAATTAGACGCATGACCATATATACAAAGACAAAGTTTTCAAAGTGGATACGTTT
TATGATATACATCTCACCAAATTTCAAGTATTACGTCATAAATTAATGTTGTTTCTATGT
CCGATTCTATTTCGAACCCGAACGCTGCATATTTGGGTCCTTGCTCGCTTGTTTTTCAAC
TTTTCGCCTTTTCATCGCGAATTAGATATTTCTTCAAGTAAAAGATCATCGT

InterProScan

ProSiteProfiles
Laminin_EGF (IPR002049) - T[1-50] 17.453
SMART
Laminin_EGF (IPR002049) - T[1-48] 1.3E-9
Pfam
Laminin_EGF (IPR002049) - T[1-43] 3.0E-9
SUPERFAMILY
TIMP-like_OB-fold (IPR008993) - T[58-190] 2.55E-28
ProSiteProfiles
Netrin_domain (IPR001134) - T[64-194] 22.376
SMART
Netrin_module_non-TIMP (IPR018933) - T[78-187] 1.1E-28
Pfam
Netrin_module_non-TIMP (IPR018933) - T[80-185] 1.0E-20

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NET1_HUMAN 36.224 % 135 3.92E-37
NET3_HUMAN 37.255 % 95.1 4.98E-23
NET5_HUMAN 30.808 % 101 2.81E-25