Aniseed - Transcript Card

Transcript 'KH2012:KH.C13.106.v1...'

Transcript Model

Transcript Id

KH2012:KH.C13.106.v1.A.SL2-1

Possible name(s)

GMDS; TGDS; UXS1

Gene model

KH2012:KH.C13.106

Location

KhC13 [65,607 / 72,294]

Sequences

Amino acid sequence

Length: 376

>KH.C13.106.v1.A.SL2-1
LRNMADSSCNGKRKNGDSCDTETKKQKKTALVTGITGQDGSYLAELLIEKGYEVHGIIRR
ASQPNTARIEHLYADRATHKEGSMKLHYGDLTDSSCLVKIINQVKPNEIYNLGAMSHVKV
SFDLAEYTADVDGVGTLRLLDAIRTCGMSDSVRFYQASTSEMFGKVQEIPQKETTPFYPR
SPYAAAKVYAYWIVVNYREAYGMHASNGILFNHESPRRGFNFVTRKITRSVAKIHLGLQE
LITLGNLDSKRDWGHARDYVKGMWMMMQHDEPGDYVLSTNETHSVREFVEKSFKHIGVEL
EWQGEGVNEIGVDKSTGVKRVQISERYYRPTEVEFLLGDYSKAKKVLGWSPDIKFNELVK
EMVEADINLMKKTPNA

Nucleotide sequence

Length: 2,323

>KH2012:KH.C13.106.v1.A.SL2-1
TCGCTCACTGTTGATAAGATTGTTTTGTTGTTTAATTAGTAGTTAAGAAACATGGCGGAC
AGTAGTTGTAACGGAAAACGAAAAAACGGAGATTCTTGCGACACGGAAACAAAAAAGCAA
AAGAAAACAGCGTTGGTTACCGGCATAACTGGTCAAGATGGTTCTTACCTGGCCGAACTA
CTCATCGAAAAAGGTTACGAGGTTCATGGTATAATACGAAGAGCTAGTCAGCCAAACACA
GCACGGATAGAACATCTGTATGCAGATCGAGCAACACACAAAGAGGGGAGCATGAAACTG
CATTATGGTGATCTCACTGATAGTAGTTGTCTCGTTAAAATCATTAATCAGGTTAAACCA
AATGAGATCTACAATCTCGGTGCAATGAGCCACGTGAAGGTGTCGTTTGATTTAGCTGAA
TATACAGCAGATGTTGATGGGGTTGGTACGTTAAGGTTGCTTGATGCTATACGAACTTGT
GGAATGAGCGACTCAGTAAGGTTCTATCAAGCTTCAACAAGTGAGATGTTTGGAAAGGTC
CAGGAAATCCCGCAAAAAGAGACGACCCCGTTTTACCCTCGATCCCCGTATGCTGCCGCA
AAGGTGTACGCATACTGGATAGTTGTGAACTACCGTGAGGCGTATGGCATGCACGCAAGT
AATGGTATTCTGTTTAACCATGAAAGCCCAAGAAGAGGTTTTAACTTCGTGACGAGGAAA
ATTACGCGGAGTGTCGCGAAGATACATCTAGGATTACAAGAATTGATAACTCTTGGTAAC
CTTGATTCGAAGCGTGATTGGGGTCATGCACGTGATTATGTGAAAGGGATGTGGATGATG
ATGCAGCATGATGAACCAGGAGATTATGTTTTATCGACCAACGAGACACACAGTGTACGA
GAGTTTGTTGAGAAATCGTTCAAGCACATCGGGGTGGAACTTGAATGGCAAGGAGAGGGT
GTGAATGAGATTGGTGTAGATAAATCTACAGGGGTTAAGCGAGTTCAAATAAGTGAGCGA
TATTATCGACCCACCGAAGTTGAATTTCTTCTCGGAGATTATTCCAAAGCTAAGAAGGTT
CTTGGTTGGTCACCTGATATTAAGTTTAACGAGTTGGTGAAAGAAATGGTGGAAGCTGAT
ATCAATCTCATGAAGAAAACACCAAATGCTTAAATCATAAACTTGGGACTTCGGGGTCAT
GAACTTATGACTTCGGGGTCATGAACTTATGACCTCGGGTCATGAACTTGTGACTTCGGG
GTCATGAACCCGTGACCGCAGGGGTCATGGTTTTACAGTTTTTTGCCCTGTTTATAACCT
ATTGCTTGTATCTATCTGCTTTAAGGTACCTTAGTAGCTTAATGTAAATTCTCAATCTAT
ACACACTCTCATGTTACTTGATTTTTTTTACTTCAAACACAAGTTATTTGTTCTTCAAAA
AATTTTAACTTCATTTTTTTAAGCAGTTTTCATTGTGATATAACTTCAACTATTCACCTT
ATGTCTTCATGATAACATTGTCTTCAATATGAGTTGTTTCAGCAAAATGTCTCGTTTTTT
TGTGGGTTGGAAAATTGTTCCTGTTAAAACTTATTTACCTTTAAACACCTGAAATAATCG
GTGCAGCTATTTCTTACTGTTTAACACTATTTATATAACTTTGGCTTATATAACTATATA
AATTATAACTTTTATATATTTAGCAAAATTTCAATTAGAAAATAAACAATTTATAAATCA
CCTGAAAAATGGTGCAACCTGTTCAAAATTATTGTTTTAACAACTTTTCACAAACTACTT
GTCTATATAGTAGGTTGGGGTAAGATGGTCAATCTTTTCATTTTATTTTCTGGTATCATT
TTATATTAAACAAAAAATTGACCATTTTATAAAACTGTATCCTCACGATTCTAAAGATGT
TGTTAATTGTTGAAACACGATTAAGAAATATGGGATATTATTTGCAAACAGTACCCATCT
TACCCCACAATACTATATTTCTCTTTTCAACTGAACAATCTAAGCCATTTTATTTCAACG
ATTATTTCTTCATGAAGCTTATTATGCAGTTCTGTAGCTTATTTAGGACCGTGTGTTTTA
CCCAGCACTTTATAATATAAACTGTCTCTCCACAAAACCGTTTGTGACGTAACAAACCAA
ACTAACGACTTCCTTTTCCAGTATGGTGCTCTGTTACCTTATATATACATGGGCGTTCTA
TATATTGATAACAATTCCATATTTCCAGTGTGTTTGTTCCGTGTTGTATATACCGTGTGT
AGGATTAGCAGTAATTGATATAATAAAAGCTGAAGCTAGTTCA

InterProScan

PANTHER	GDP_Man_deHydtase (IPR006368) - T[7-374] 3.2E-179
Hamap	GDP_Man_deHydtase (IPR006368) - T[28-372] 56.172
TIGRFAM	GDP_Man_deHydtase (IPR006368) - T[28-369] 3.2E-181
SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[28-368] 6.03E-81
Pfam	NAD(P)-bd_dom (IPR016040) - T[31-362] 1.0E-157

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
GMDS_HUMAN	69.355 %	553	0