- Transcript 'KH2012:KH.C13.116.v1...'
Transcript Model
Transcript Id
KH2012:KH.C13.116.v1.A.ND1-1
Possible name(s)
COL11A2
Gene model
Location
KhC13 [1,601,511 / 1,630,881]
Amino acid sequence
Length: 1,344
>KH.C13.116.v1.A.ND1-1
RARKRPRTIRSIVSETMGTSTSSIVTPQWGKQSALAAWLLCCISLAIIPNVQTARIDLLD
RFKISTSLGVSPVPGSCANAKKRAAPRTAFRLSRNTQAIALPSDYVFSEFVRDGFPQEFS
ITAIIKPKVGVRNPFLLQMMHADRWRQLGFTVGEEPEFHYRTDTDVPPDYPTFSSVNLAD
GRWHKVAWSVYNENVQLWVDCVMVTEKIVRSDANTQLNLGGVVLLGKEPGTSGNGFVGDI
ENLYFDSDPSVAGQMCFPASNLSPNCGSTAAAIREEPETAVFSAAGTPNPEESEGLIIPD
SSLPGERDGGRGDNGDGGSRGQKGEKGEQAVIEPGIFIPGPPGPPGEPGLDGPPGFQGPP
GGPGEMGDRGLDGPPGFQGPPGGPGEMGDRGPAGRDGLPGAKGLPGPPGRHIMIPFRIAQ
PHGQKGPGSNAPAELQAQLALTQARLALQGPPGPQGLSGMTGAAGDMGPAGIKGESGEPG
PMGQRGSRGPPGLDGVSGKTGRPGEDGLRGEPGPVGIKGDRGYDGLPGLPGPKGHRGETG
GVGPIGPPGVDGEQGEHGEPGPRGLPGEAGPRGELGHKGPPGVSGPPGPRGVHGQQGSKG
NLGPQGEPGPPGQQGAPGPQGISGPQGLMGPPGVKGPPGKSGLPGIPGADGVPGHPGNEG
PSGSKGSQGQFGPQGPQGYPGTRGVKGEGGVRGIKGNKGEKGLDGLAGFKGDMGPKGDGG
ISGAPGPRGEDGPDGPKGREGPRGEVGPVGLPGEKGKIGLPGILGYPGRSGIKGSLGKPG
KTGHTGLKGDRGLEGKRGQQGQRGPKGPRGKRGPRGSTGKSGPKGDRGQDGPQGPIGERG
PPGPRGASGYTGSKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENG
PSGERGHPGPPGPIGEPGLSGSAGKEGSKGDRGPNGPPGKMGATGSPGFPGSRGPQGPVG
APGLKGNEGPPGPTGPAGVSGQRGPPGPSGQIGPLGRPGSSGPAGPPGENGSPGGPGGPG
PAGRDGLQGPVGLPGPPGSIGPRGEDGDKGEAGPPGSTGLKGGKGEHGPPGPPGEQGNSG
EPGPAGNDGEPGARGQQGLYGEKGDEGARGFPGPPGPRGLQGIPGTSGNKGDSGDAGPLG
PPGPPGQRGPPGVQGADGPLGPPGTYGQPGNVGDKGEPGNVGAPGIPGDSGPMGPNGEAG
QKGETGPSGPQGENGPKGPRGDDGPKGEPGPIGHPGDPGVAGIPGTMGDEGPPGDVGDTG
APGEPGPPGPIGEVGPSGGPGRRGPAGNPGTEGRSGEKGAKGEAGGIGPVGEPGAHGPQG
KHGKQGCTGLNAIAWPCRCTWVAW
Nucleotide sequence
Length: 5,842
>KH2012:KH.C13.116.v1.A.ND1-1
TGTTATACAACATACGGTGCTTGCATTTCAACGTTGCCGTGACGTCATTAGAACTTTTCG
TAAGTTCAAGCAGGCGTGAAACATTTAAAGTGACAAACTGCAGGCTGTGGTTGGAAAAGA
AGAAGTTTGAATTGCCGATTTAACGCGGCGTTTACTTTCGACAAAGACAGCACAGTGGGG
AACCATTCAAGCTTGAAGGAGTACGAGAATTCGCGAACAACCGCGATTTCCGCTGTCTGG
GCTATATGAGACAACTTTTTTCCTTCGGTCGGAATATTTTAACTTGTGGCAAGGAACGGT
CATTTCTGAAATCACTTGCCGCTACAGGCGCGGCCCCGGAGTTGCGTTTTACGGTTTAGG
AAGCGGCATTGAAGTTGACGGGCGCGAAAGCGACCGCGAACTATTCGTTCAATTGTGAGC
GAAACAATGGGCACCAGCACATCGTCCATTGTTACGCCACAATGGGGCAAACAATCAGCA
TTAGCGGCGTGGCTGCTGTGCTGCATTAGCTTGGCTATAATTCCAAACGTACAAACGGCT
CGAATTGACTTGTTGGACAGATTTAAGATATCGACCAGTCTTGGGGTGTCTCCTGTTCCG
GGGAGTTGCGCCAATGCAAAGAAAAGGGCTGCACCAAGAACTGCCTTCAGGCTTTCTAGA
AACACCCAGGCCATTGCTCTACCATCGGACTATGTCTTCAGCGAATTCGTTCGCGATGGC
TTCCCTCAAGAGTTCTCGATCACGGCAATTATCAAACCAAAAGTTGGGGTCAGGAATCCA
TTCCTGCTCCAAATGATGCACGCTGATCGGTGGAGACAACTTGGTTTTACTGTGGGAGAA
GAACCAGAGTTCCACTACAGAACAGACACAGACGTTCCACCTGACTATCCAACCTTCTCG
AGTGTCAATCTTGCTGATGGAAGATGGCACAAAGTTGCGTGGTCAGTTTACAACGAGAAC
GTACAGTTGTGGGTGGATTGCGTCATGGTGACGGAGAAGATCGTTCGATCTGACGCGAAC
ACACAACTCAACCTTGGAGGTGTGGTTTTGCTAGGAAAAGAACCCGGGACATCTGGAAAT
GGATTTGTGGGAGACATAGAAAACCTATACTTCGACTCAGACCCGAGTGTAGCTGGCCAG
ATGTGTTTCCCAGCATCCAACCTATCTCCAAACTGTGGATCTACAGCAGCAGCCATCAGG
GAAGAACCAGAAACTGCTGTTTTCTCTGCAGCTGGCACCCCAAACCCAGAGGAATCTGAA
GGTTTAATAATTCCTGATTCATCTTTACCTGGTGAAAGGGATGGGGGAAGGGGAGATAAT
GGAGATGGTGGAAGCAGGGGACAAAAAGGAGAGAAGGGAGAACAAGCTGTGATTGAACCT
GGGATTTTCATTCCTGGACCCCCCGGACCGCCTGGAGAACCTGGTCTCGACGGACCTCCT
GGATTCCAAGGACCACCGGGTGGCCCCGGAGAGATGGGAGATCGGGGTCTCGACGGACCT
CCTGGATTCCAAGGACCACCGGGTGGCCCCGGAGAGATGGGAGATCGGGGCCCTGCTGGT
AGAGATGGACTTCCTGGCGCCAAGGGGCTTCCTGGTCCGCCTGGTCGACACATCATGATA
CCATTCAGAATAGCTCAACCTCATGGACAGAAGGGACCAGGTTCGAACGCACCAGCTGAA
CTCCAGGCACAACTTGCTTTAACACAAGCTAGGCTTGCTCTACAAGGACCACCTGGACCA
CAGGGATTGTCAGGAATGACTGGAGCTGCTGGTGACATGGGACCTGCAGGCATTAAAGGC
GAAAGTGGTGAACCAGGACCTATGGGACAAAGGGGGTCACGTGGTCCCCCTGGTTTGGAT
GGTGTGTCCGGCAAAACTGGAAGACCAGGAGAGGATGGTTTACGAGGTGAACCTGGACCT
GTTGGAATCAAGGGTGACAGAGGATATGATGGTCTTCCTGGCTTACCAGGACCAAAGGGG
CACAGGGGTGAAACTGGCGGAGTTGGACCTATTGGACCACCAGGTGTCGATGGAGAGCAG
GGAGAACATGGTGAACCAGGACCTCGTGGATTGCCTGGCGAGGCGGGACCACGTGGAGAG
TTGGGACACAAGGGACCACCTGGTGTTTCTGGGCCTCCTGGACCAAGAGGTGTTCATGGG
CAACAAGGATCAAAAGGAAACTTGGGCCCACAAGGAGAGCCTGGTCCACCTGGACAACAA
GGAGCACCCGGGCCACAGGGTATATCTGGTCCCCAAGGGTTGATGGGTCCACCTGGAGTC
AAAGGACCCCCCGGGAAGTCTGGGTTACCCGGTATTCCTGGGGCTGATGGGGTTCCTGGT
CACCCTGGTAACGAGGGCCCTAGTGGGTCAAAGGGGTCACAGGGTCAATTTGGACCACAA
GGGCCACAGGGTTATCCTGGTACCAGAGGTGTCAAAGGAGAAGGAGGAGTGAGAGGAATA
AAAGGAAACAAAGGAGAAAAAGGTCTCGATGGTTTAGCCGGTTTCAAAGGTGACATGGGA
CCTAAAGGAGATGGCGGGATTTCTGGCGCTCCAGGTCCACGCGGAGAAGATGGGCCAGAT
GGCCCTAAGGGAAGAGAAGGTCCTCGTGGAGAAGTTGGCCCTGTTGGTTTGCCCGGTGAA
AAGGGAAAGATTGGTCTCCCTGGTATTCTGGGTTATCCTGGAAGATCTGGTATCAAGGGG
TCACTGGGCAAGCCTGGAAAAACTGGACATACTGGACTCAAGGGTGACCGGGGCTTGGAA
GGCAAGAGAGGTCAACAAGGTCAAAGGGGGCCAAAGGGTCCACGAGGCAAACGAGGTCCG
AGAGGATCTACTGGGAAATCTGGACCAAAGGGTGACAGAGGACAAGATGGACCGCAAGGA
CCAATCGGAGAAAGAGGCCCACCAGGACCCAGAGGAGCAAGTGGTTACACTGGCAGCAAG
GGACCCCCTGGCCCACCAGGAAAAGATGGTTTACCTGGACACCCTGGAAGTCGGGGTGAA
ACAGGTTTCCAAGGGAAGACTGGGCCCCCTGGACCTGCTGGTGTTGTAGGACCTCAAGGT
CCAACCGGTGAAAATGGACCATCAGGGGAGCGAGGACACCCGGGACCTCCTGGACCAATT
GGAGAACCTGGTTTGTCTGGATCTGCTGGAAAAGAGGGATCTAAGGGAGACAGAGGACCA
AATGGACCCCCAGGAAAGATGGGTGCAACAGGTTCACCGGGTTTCCCAGGTTCAAGGGGA
CCACAAGGCCCTGTGGGTGCTCCAGGATTGAAGGGTAATGAAGGACCTCCTGGCCCCACT
GGACCAGCTGGCGTCAGTGGTCAACGCGGCCCTCCTGGTCCCTCTGGCCAAATTGGACCT
CTGGGTCGCCCAGGGTCAAGTGGGCCTGCTGGACCACCTGGTGAGAACGGAAGCCCCGGT
GGACCTGGAGGCCCAGGACCTGCTGGTAGAGATGGTCTACAAGGGCCTGTTGGTCTTCCT
GGTCCTCCTGGTTCCATTGGCCCAAGAGGAGAAGATGGGGACAAGGGTGAAGCTGGTCCA
CCAGGCTCCACAGGTTTGAAAGGCGGGAAAGGCGAACATGGGCCACCTGGACCTCCCGGT
GAACAAGGAAACAGTGGAGAACCTGGACCTGCTGGTAACGATGGTGAACCCGGGGCTCGG
GGTCAACAAGGTTTATATGGAGAGAAGGGTGATGAAGGGGCTAGGGGATTCCCCGGACCC
CCAGGACCCCGTGGCTTACAGGGTATTCCCGGAACTTCTGGCAACAAAGGTGACTCAGGA
GATGCTGGACCTTTGGGACCACCTGGCCCTCCCGGACAACGAGGCCCCCCTGGTGTTCAA
GGTGCCGATGGACCTCTTGGCCCCCCTGGTACTTATGGACAACCTGGCAACGTTGGAGAC
AAGGGTGAACCTGGTAATGTAGGAGCACCTGGTATTCCTGGAGATTCGGGCCCAATGGGA
CCAAACGGAGAAGCGGGACAAAAGGGTGAAACTGGGCCATCGGGACCACAAGGTGAAAAT
GGACCAAAAGGACCTCGCGGAGATGATGGTCCTAAAGGAGAACCTGGACCCATCGGCCAT
CCTGGAGACCCTGGTGTGGCTGGTATTCCTGGTACAATGGGAGACGAAGGACCACCGGGT
GACGTTGGTGACACGGGAGCACCTGGAGAGCCGGGACCTCCTGGACCCATCGGTGAGGTT
GGACCTTCTGGTGGCCCCGGAAGACGGGGACCTGCCGGTAACCCTGGAACTGAAGGACGA
TCTGGAGAGAAAGGAGCTAAGGGTGAAGCTGGTGGTATTGGACCTGTAGGCGAACCTGGT
GCCCATGGACCTCAAGGTAAACATGGAAAACAAGGATGTACCGGTTTGAATGCTATTGCC
TGGCCCTGCAGGTGCACCTGGGTTGCCTGGTAACGCTGGAGCTGATGGCCCTGTTGGCCC
AATGGGACCTACTGGTTTGAAAGGAATAAAGGGAGAAGTTGGCCCCGGTGGTGAAAAGGG
TCACCCTGGTTTGATCGGTTTGGTCGGACCCCCAGGTGAAGAGGGTGAGAAGGGTGAACG
TGGACCCCATGGTAGAGATGGACCCCCAGGGGTTAAGGGTGACGATGGAAGACCTGGCCC
CGCTGGCCCAATAGGGCCAATGGGACCACCTGGGTTACCGGGTGGAGTTGGAATGAAAGG
AAATAAGGGAAGCTTGGGACCCACCGGCCCCAAGGGAGATGAAGGTATCCAAGGGCCTCC
TGGCCCTCCTGGTCCACCCGGCGAAGTCTTCAACGCAGGAGCACTTAGAGCGCCGAGCTC
AATCAAGGCTCGTGCAAGAAGGTCAGCTGAGGAGGAGACAGAAGGTGCCAGAGTGAAACG
CCAAGCTGTGTTTGAGGAGAACATGGTTGATGATTATCCACAAGGCTTGGAGGAAATCTT
CGGGATGATGGAATCAATTAAGATGGATCTGCAAATGTTGAAAGAACCAATGGGACGAAC
CAGAGAAAATCCTGGCAGGACTTGTAAGGATATCTGGTACTGTCATCCAGACTTTGCTTC
AGGATTATACTGGATCGATCCGAACGGTGGGTGCTCGGCAGACGCCATTGAGGTCTGGTG
TGATTTTGAGGCAGAAGGAGACACTTGTCTCAATCCTCTCACGGTTACCATTCCAGCTCG
AAGGTGGCCTAAAGCTTCACCTGGAGATTGGTACAGCTCTTACAGGCTTGGGGAGAAGTT
TGATTACAACACCACCATCCCACAATACAACTTCCTGAGGTTGCTGTCGAGTCACGCTCG
CCAGAGATTCACATACAAGTGTGTCAACTCTATTGGATGGGAAGACCAACAGAACGATAA
CTTCAACAAAGCAATTCAACTTATGGGTTCAAATGAAGTTGTTTTCACTCATGGAAGTGA
AGAAGTAACAGTGTTGGAGGACTCTTGCAAGAGTGGACAGGGAACTGGACAAGTTGTGAT
TGAGGTTCGAACCAAAGAATTAGAGATGTTGCCGTTGGTCGATTACAAGGCCTTCGATTT
TGGAACACGACCACAACGGCACGGCTATCATCTCGACCGTGCTTGTTTCAGTGGCTGAAT
GTAATCATGTGTGTCTTCACGGGGCATTTATGATGGGTGGCACGCGCCACGGGATGTGTA
CGCCTCCTCTTAATGAAGTCGTGTACACTATGGAGAAGAAATGGGTACGCAAGTGCTGGT
GCATACCCATTTCTTCATCATCACATGACCTCTGTGGACCAATCAAATTCTTTGTGGGAT
TCTAGACTGTGTGATGTCATCAGTATTACGTAATACCTCACTGTTGCTGCTGAGTTGCGT
TTTTGGCGGAAATACAAACTTT
| SMART |
Laminin_G (IPR001791) - T[55-249] 1.1E-15 - T[117-248] 3.3E-6 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[56-256] 1.19E-29 |
| Pfam |
Laminin_G (IPR001791) - T[172-247] 3.3E-8 |
| Pfam |
Collagen (IPR008160) - T[352-410] 4.5E-7 - T[449-505] 7.6E-9 - T[707-762] 1.1E-6 - T[1077-1133] 1.3E-9 - T[1107-1163] 2.3E-8 - T[1131-1188] 8.9E-8 - T[1272-1329] 1.6E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 64.961 % | 576 | 5.2E-179 |
| COBA1_HUMAN | 54.943 % | 469 | 4.19E-140 |
| CO5A3_HUMAN | 59.144 % | 495 | 1.63E-149 |