- Transcript 'KH2012:KH.C6.71.v2.A...' >
- Transcript 'KH2012:KH.C13.116.v2...'
Transcript Model
Transcript Id
KH2012:KH.C13.116.v2.A.SL5-1
Possible name(s)
COL11A2
Gene model
Location
KhC13 [1,603,096 / 1,630,881]
Amino acid sequence
Length: 1,290
>KH.C13.116.v2.A.SL5-1
RIDLLDRFKISTSLGVSPVPGSCANAKKRAAPRTAFRLSRNTQAIALPSDYVFSEFVRDG
FPQEFSITAIIKPKVGVRNPFLLQMMHADRWRQLGFTVGEEPEFHYRTDTDVPPDYPTFS
SVNLADGRWHKVAWSVYNENVQLWVDCVMVTEKIVRSDANTQLNLGGVVLLGKEPGTSGN
GFVGDIENLYFDSDPSVAGQMCFPASNLSPNCGSTAAAIREEPETAVFSAAGTPNPEESE
GLIIPDSSLPGERDGGRGDNGDGGSRGQKGEKGEQAVIEPGIFIPGPPGPPGEPGLDGPP
GFQGPPGGPGEMGDRGLDGPPGFQGPPGGPGEMGDRGPAGRDGLPGAKGLPGPPGRHIMI
PFRIAQPHGQKGPGSNAPAELQAQLALTQARLALQGPPGPQGLSGMTGAAGDMGPAGIKG
ESGEPGPMGQRGSRGPPGLDGVSGKTGRPGEDGLRGEPGPVGIKGDRGYDGLPGLPGPKG
HRGETGGVGPIGPPGVDGEQGEHGEPGPRGLPGEAGPRGELGHKGPPGVSGPPGPRGVHG
QQGSKGNLGPQGEPGPPGQQGAPGPQGISGPQGLMGPPGVKGPPGKSGLPGIPGADGVPG
HPGNEGPSGSKGSQGQFGPQGPQGYPGTRGVKGEGGVRGIKGNKGEKGLDGLAGFKGDMG
PKGDGGISGAPGPRGEDGPDGPKGREGPRGEVGPVGLPGEKGKIGLPGILGYPGRSGIKG
SLGKPGKTGHTGLKGDRGLEGKRGQQGQRGPKGPRGKRGPRGSTGKSGPKGDRGQDGPQG
PIGERGPPGPRGASGYTGSKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQG
PTGENGPSGERGHPGPPGPIGEPGLSGSAGKEGSKGDRGPNGPPGKMGATGSPGFPGSRG
PQGPVGAPGLKGNEGPPGPTGPAGVSGQRGPPGPSGQIGPLGRPGSSGPAGPPGENGSPG
GPGGPGPAGRDGLQGPVGLPGPPGSIGPRGEDGDKGEAGPPGSTGLKGGKGEHGPPGPPG
EQGNSGEPGPAGNDGEPGARGQQGLYGEKGDEGARGFPGPPGPRGLQGIPGTSGNKGDSG
DAGPLGPPGPPGQRGPPGVQGADGPLGPPGTYGQPGNVGDKGEPGNVGAPGIPGDSGPMG
PNGEAGQKGETGPSGPQGENGPKGPRGDDGPKGEPGPIGHPGDPGVAGIPGTMGDEGPPG
DVGDTGAPGEPGPPGPIGEVGPSGGPGRRGPAGNPGTEGRSGEKGAKGEAGGIGPVGEPG
AHGPQGKHGKQGCTGLNAIAWPCRCTWVAW
Nucleotide sequence
Length: 5,304
>KH2012:KH.C13.116.v2.A.SL5-1
CTCGAATTGACTTGTTGGACAGATTTAAGATATCGACCAGTCTTGGGGTGTCTCCTGTTC
CGGGGAGTTGCGCCAATGCAAAGAAAAGGGCTGCACCAAGAACTGCCTTCAGGCTTTCTA
GAAACACCCAGGCCATTGCTCTACCATCGGACTATGTCTTCAGCGAATTCGTTCGCGATG
GCTTCCCTCAAGAGTTCTCGATCACGGCAATTATCAAACCAAAAGTTGGGGTCAGGAATC
CATTCCTGCTCCAAATGATGCACGCTGATCGGTGGAGACAACTTGGTTTTACTGTGGGAG
AAGAACCAGAGTTCCACTACAGAACAGACACAGACGTTCCACCTGACTATCCAACCTTCT
CGAGTGTCAATCTTGCTGATGGAAGATGGCACAAAGTTGCGTGGTCAGTTTACAACGAGA
ACGTACAGTTGTGGGTGGATTGCGTCATGGTGACGGAGAAGATCGTTCGATCTGACGCGA
ACACACAACTCAACCTTGGAGGTGTGGTTTTGCTAGGAAAAGAACCCGGGACATCTGGAA
ATGGATTTGTGGGAGACATAGAAAACCTATACTTCGACTCAGACCCGAGTGTAGCTGGCC
AGATGTGTTTCCCAGCATCCAACCTATCTCCAAACTGTGGATCTACAGCAGCAGCCATCA
GGGAAGAACCAGAAACTGCTGTTTTCTCTGCAGCTGGCACCCCAAACCCAGAGGAATCTG
AAGGTTTAATAATTCCTGATTCATCTTTACCTGGTGAAAGGGATGGGGGAAGGGGAGATA
ATGGAGATGGTGGAAGCAGGGGACAAAAAGGAGAGAAGGGAGAACAAGCTGTGATTGAAC
CTGGGATTTTCATTCCTGGACCCCCCGGACCGCCTGGAGAACCTGGTCTCGACGGACCTC
CTGGATTCCAAGGACCACCGGGTGGCCCCGGAGAGATGGGAGATCGGGGTCTCGACGGAC
CTCCTGGATTCCAAGGACCACCGGGTGGCCCCGGAGAGATGGGAGATCGGGGCCCTGCTG
GTAGAGATGGACTTCCTGGCGCCAAGGGGCTTCCTGGTCCGCCTGGTCGACACATCATGA
TACCATTCAGAATAGCTCAACCTCATGGACAGAAGGGACCAGGTTCGAACGCACCAGCTG
AACTCCAGGCACAACTTGCTTTAACACAAGCTAGGCTTGCTCTACAAGGACCACCTGGAC
CACAGGGATTGTCAGGAATGACTGGAGCTGCTGGTGACATGGGACCTGCAGGCATTAAAG
GCGAAAGTGGTGAACCAGGACCTATGGGACAAAGGGGGTCACGTGGTCCCCCTGGTTTGG
ATGGTGTGTCCGGCAAAACTGGAAGACCAGGAGAGGATGGTTTACGAGGTGAACCTGGAC
CTGTTGGAATCAAGGGTGACAGAGGATATGATGGTCTTCCTGGCTTACCAGGACCAAAGG
GGCACAGGGGTGAAACTGGCGGAGTTGGACCTATTGGACCACCAGGTGTCGATGGAGAGC
AGGGAGAACATGGTGAACCAGGACCTCGTGGATTGCCTGGCGAGGCGGGACCACGTGGAG
AGTTGGGACACAAGGGACCACCTGGTGTTTCTGGGCCTCCTGGACCAAGAGGTGTTCATG
GGCAACAAGGATCAAAAGGAAACTTGGGCCCACAAGGAGAGCCTGGTCCACCTGGACAAC
AAGGAGCACCCGGGCCACAGGGTATATCTGGTCCCCAAGGGTTGATGGGTCCACCTGGAG
TCAAAGGACCCCCCGGGAAGTCTGGGTTACCCGGTATTCCTGGGGCTGATGGGGTTCCTG
GTCACCCTGGTAACGAGGGCCCTAGTGGGTCAAAGGGGTCACAGGGTCAATTTGGACCAC
AAGGGCCACAGGGTTATCCTGGTACCAGAGGTGTCAAAGGAGAAGGAGGAGTGAGAGGAA
TAAAAGGAAACAAAGGAGAAAAAGGTCTCGATGGTTTAGCCGGTTTCAAAGGTGACATGG
GACCTAAAGGAGATGGCGGGATTTCTGGCGCTCCAGGTCCACGCGGAGAAGATGGGCCAG
ATGGCCCTAAGGGAAGAGAAGGTCCTCGTGGAGAAGTTGGCCCTGTTGGTTTGCCCGGTG
AAAAGGGAAAGATTGGTCTCCCTGGTATTCTGGGTTATCCTGGAAGATCTGGTATCAAGG
GGTCACTGGGCAAGCCTGGAAAAACTGGACATACTGGACTCAAGGGTGACCGGGGCTTGG
AAGGCAAGAGAGGTCAACAAGGTCAAAGGGGGCCAAAGGGTCCACGAGGCAAACGAGGTC
CGAGAGGATCTACTGGGAAATCTGGACCAAAGGGTGACAGAGGACAAGATGGACCGCAAG
GACCAATCGGAGAAAGAGGCCCACCAGGACCCAGAGGAGCAAGTGGTTACACTGGCAGCA
AGGGACCCCCTGGCCCACCAGGAAAAGATGGTTTACCTGGACACCCTGGAAGTCGGGGTG
AAACAGGTTTCCAAGGGAAGACTGGGCCCCCTGGACCTGCTGGTGTTGTAGGACCTCAAG
GTCCAACCGGTGAAAATGGACCATCAGGGGAGCGAGGACACCCGGGACCTCCTGGACCAA
TTGGAGAACCTGGTTTGTCTGGATCTGCTGGAAAAGAGGGATCTAAGGGAGACAGAGGAC
CAAATGGACCCCCAGGAAAGATGGGTGCAACAGGTTCACCGGGTTTCCCAGGTTCAAGGG
GACCACAAGGCCCTGTGGGTGCTCCAGGATTGAAGGGTAATGAAGGACCTCCTGGCCCCA
CTGGACCAGCTGGCGTCAGTGGTCAACGCGGCCCTCCTGGTCCCTCTGGCCAAATTGGAC
CTCTGGGTCGCCCAGGGTCAAGTGGGCCTGCTGGACCACCTGGTGAGAACGGAAGCCCCG
GTGGACCTGGAGGCCCAGGACCTGCTGGTAGAGATGGTCTACAAGGGCCTGTTGGTCTTC
CTGGTCCTCCTGGTTCCATTGGCCCAAGAGGAGAAGATGGGGACAAGGGTGAAGCTGGTC
CACCAGGCTCCACAGGTTTGAAAGGCGGGAAAGGCGAACATGGGCCACCTGGACCTCCCG
GTGAACAAGGAAACAGTGGAGAACCTGGACCTGCTGGTAACGATGGTGAACCCGGGGCTC
GGGGTCAACAAGGTTTATATGGAGAGAAGGGTGATGAAGGGGCTAGGGGATTCCCCGGAC
CCCCAGGACCCCGTGGCTTACAGGGTATTCCCGGAACTTCTGGCAACAAAGGTGACTCAG
GAGATGCTGGACCTTTGGGACCACCTGGCCCTCCCGGACAACGAGGCCCCCCTGGTGTTC
AAGGTGCCGATGGACCTCTTGGCCCCCCTGGTACTTATGGACAACCTGGCAACGTTGGAG
ACAAGGGTGAACCTGGTAATGTAGGAGCACCTGGTATTCCTGGAGATTCGGGCCCAATGG
GACCAAACGGAGAAGCGGGACAAAAGGGTGAAACTGGGCCATCGGGACCACAAGGTGAAA
ATGGACCAAAAGGACCTCGCGGAGATGATGGTCCTAAAGGAGAACCTGGACCCATCGGCC
ATCCTGGAGACCCTGGTGTGGCTGGTATTCCTGGTACAATGGGAGACGAAGGACCACCGG
GTGACGTTGGTGACACGGGAGCACCTGGAGAGCCGGGACCTCCTGGACCCATCGGTGAGG
TTGGACCTTCTGGTGGCCCCGGAAGACGGGGACCTGCCGGTAACCCTGGAACTGAAGGAC
GATCTGGAGAGAAAGGAGCTAAGGGTGAAGCTGGTGGTATTGGACCTGTAGGCGAACCTG
GTGCCCATGGACCTCAAGGTAAACATGGAAAACAAGGATGTACCGGTTTGAATGCTATTG
CCTGGCCCTGCAGGTGCACCTGGGTTGCCTGGTAACGCTGGAGCTGATGGCCCTGTTGGC
CCAATGGGACCTACTGGTTTGAAAGGAATAAAGGGAGAAGTTGGCCCCGGTGGTGAAAAG
GGTCACCCTGGTTTGATCGGTTTGGTCGGACCCCCAGGTGAAGAGGGTGAGAAGGGTGAA
CGTGGACCCCATGGTAGAGATGGACCCCCAGGGGTTAAGGGTGACGATGGAAGACCTGGC
CCCGCTGGCCCAATAGGGCCAATGGGACCACCTGGGTTACCGGGTGGAGTTGGAATGAAA
GGAAATAAGGGAAGCTTGGGACCCACCGGCCCCAAGGGAGATGAAGGTATCCAAGGGCCT
CCTGGCCCTCCTGGTCCACCCGGCGAAGTCTTCAACGCAGGAGCACTTAGAGCGCCGAGC
TCAATCAAGGCTCGTGCAAGAAGGTCAGCTGAGGAGGAGACAGAAGGTGCCAGAGTGAAA
CGCCAAGCTGTGTTTGAGGAGAACATGGTTGATGATTATCCACAAGGCTTGGAGGAAATC
TTCGGGATGATGGAATCAATTAAGATGGATCTGCAAATGTTGAAAGAACCAATGGGACGA
ACCAGAGAAAATCCTGGCAGGACTTGTAAGGATATCTGGTACTGTCATCCAGACTTTGCT
TCAGGATTATACTGGATCGATCCGAACGGTGGGTGCTCGGCAGACGCCATTGAGGTCTGG
TGTGATTTTGAGGCAGAAGGAGACACTTGTCTCAATCCTCTCACGGTTACCATTCCAGCT
CGAAGGTGGCCTAAAGCTTCACCTGGAGATTGGTACAGCTCTTACAGGCTTGGGGAGAAG
TTTGATTACAACACCACCATCCCACAATACAACTTCCTGAGGTTGCTGTCGAGTCACGCT
CGCCAGAGATTCACATACAAGTGTGTCAACTCTATTGGATGGGAAGACCAACAGAACGAT
AACTTCAACAAAGCAATTCAACTTATGGGTTCAAATGAAGTTGTTTTCACTCATGGAAGT
GAAGAAGTAACAGTGTTGGAGGACTCTTGCAAGAGTGGACAGGGAACTGGACAAGTTGTG
ATTGAGGTTCGAACCAAAGAATTAGAGATGTTGCCGTTGGTCGATTACAAGGCCTTCGAT
TTTGGAACACGACCACAACGGCACGGCTATCATCTCGACCGTGCTTGTTTCAGTGGCTGA
ATGTAATCATGTGTGTCTTCACGGGGCATTTATGATGGGTGGCACGCGCCACGGGATGTG
TACGCCTCCTCTTAATGAAGTCGTGTACACTATGGAGAAGAAATGGGTACGCAAGTGCTG
GTGCATACCCATTTCTTCATCATCACATGACCTCTGTGGACCAATCAAATTCTTTGTGGG
ATTCTAGACTGTGTGATGTCATCAGTATTACGTAATACCTCACTGTTGCTGCTGAGTTGC
GTTTTTGGCGGAAATACAAACTTT
| SMART |
Laminin_G (IPR001791) - T[1-195] 1.1E-15 - T[63-194] 3.3E-6 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[2-202] 1.39E-29 |
| Pfam |
Laminin_G (IPR001791) - T[118-193] 3.1E-8 |
| Pfam |
Collagen (IPR008160) - T[298-356] 4.2E-7 - T[396-451] 1.8E-8 - T[653-708] 9.1E-7 - T[1077-1134] 8.4E-8 - T[1218-1275] 1.6E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 64.961 % | 572 | 4.19E-178 |
| COBA1_HUMAN | 55.306 % | 466 | 3.4E-139 |
| CO5A3_HUMAN | 59.144 % | 494 | 1.38E-149 |