Aniseed - Transcript Card

Transcript 'KH2012:KH.C13.130.v1...'

Transcript Model

Transcript Id

KH2012:KH.C13.130.v1.C.nonSL5-1

Possible name(s)

MAP1LC3A; MAP1LC3B; MAP1LC3C

Gene model

KH2012:KH.C13.130

Location

KhC13 [108,807 / 112,196]

Sequences

Amino acid sequence

Length: 75

>KH.C13.130.v1.C.nonSL5-1
AWGVNTPWSLVNMTMSQFATIIRNRMSVGSSQAVYLTVDSRHMPGMALTMAEIYNDNLDE
DGFLYMTYASQEMFG

Nucleotide sequence

Length: 779

>KH2012:KH.C13.130.v1.C.nonSL5-1
TCGTTTGGGTATTGTAGTTGATAGTTATGTCGCGTCTAGAAAAGCAGAACCAAGCGGGGA
AGAGACATTTTAAAGAGACAAAATCACTTGCAACTAGAAAAGCAGAAGTTCATTCTATAA
GAGACAAGTTTCCGACCAAAATACCATAAACATGATACTTATTGCAACTTTCACCATTAC
GTGATTGTTGAACGCTACAAAAAGGAGACAATGTTATACCTTTACTTGAGCATGGGGTGT
AAATACACCATGGTCCCTGGTGAATATGACAATGAGTCAATTTGCGACGATAATAAGAAA
TCGTATGTCGGTCGGTTCCTCCCAGGCCGTCTACCTGACCGTTGATAGTCGCCACATGCC
AGGAATGGCGCTTACGATGGCGGAAATATACAACGATAACTTGGACGAGGACGGATTCTT
ATATATGACGTACGCTTCCCAAGAGATGTTCGGCTGATAAGTTGAGAAGACGTACTGCTG
CAAGAAATATCTTTGGTTGTACCGTTATATTTTACACTTAAATCAAAGTATTTAGTTTGA
TAAGATTCAAACCGAAAGCGATCCTTTATGTCAGCTGCACTTCGTACGTTTTATTTTGCA
ATACTTGCCGTTATATTGGTTACTAACAATAGCGAACTCTCCTGTCTGTATTCATATATT
GCTACACATAGTACTTGCCTTTAGTTAACTGTGAAATAAATCAATGAGCTTATTTTCTAT
ATTACGCCTTGGAAAACTTTATGCAATTGCTACTTGTAAATAAAATAAGCTAATGAAAA

InterProScan

SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[12-75] 4.65E-18
Pfam	Atg8-like (IPR004241) - T[12-75] 5.4E-18
PANTHER	Atg8-like (IPR004241) - T[12-75] 6.6E-26
PANTHER	MAP1A/MAP1B_LC3C (IPR027731) - T[12-75] 6.6E-26

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
MLP3C_HUMAN	56.25 %	80.5	3.12E-21