- Clone 'cien79030' >
- Clone 'cieg016e11' >
- Clone 'cien58941' >
- Transcript 'KH2012:KH.C14.309.v1...' >
- Transcript 'KH2012:KH.C13.146.v1...'
Transcript Model
Transcript Id
KH2012:KH.C13.146.v1.C.ND1-1
Possible name(s)
ADAMTS9; HMCN1; SEMA5A
Gene model
Location
KhC13 [115,001 / 121,692]
Amino acid sequence
Length: 586
>KH.C13.146.v1.C.ND1-1
IGISETECQLVGCCYSTKTYRCIYPSLQLMRQFLTVERFPQFITNDVTETRCSPTTTFIP
KLFHRLPCLQDNNSTSNSRSLYSCPDVACCKDALALLPGAIGLQGQTQPGQVQPPPLVNV
DPLELLTAHSNPGSSTLEALSAIYCPFYFFPVPGFPDLSSSAEGCCVRHACFHLKATSLY
PTAETTVQHSWSTWSTWGACDVTCGTGRRQSRRSCISTSGMLLVSTDLCRGVNTQYQACT
VGQCGASWATWSAWQPCAETCGGALRSRRRACVDIPSNQTLNPDRCVGPEFDMISCGELP
CANWGSWGQYGACNASCNKLGVTSRQRACLTPTGTHNQSLTCIGESIEFRSCNGPQCDAW
GVWGSWSACGADCVRSRSKYCGTNCGTQIPSQSEQCYIGSCTRPRPSPWVAWGGWGQWES
CTATCGVGSRIRRRGCYYLGTSKWVMHHSFCGFVYGSSLVLQSQRGSCNVTCRNVYTWGP
FTPYSQCSNTCGRGIQTKTKRCYDLLGSQVSSDKCVGSDASSRVCEVKKCMITWSDWSQW
SSCPFSCSPPSGNKGSRVRIRCKVQALECTGENREVDVGICPVNAC
Nucleotide sequence
Length: 2,581
>KH2012:KH.C13.146.v1.C.ND1-1
GGTAACTTTGCCGGATATTTATGACGTCATAATGAATTTCGTGACTGTTGCAGCGTTCGC
CATGGTGATATCAGAAGTTGTAAGCGACCCCTCGACCCGGTGTCAGGTTAGTGCCAGCCA
ACGCAGGGTGTCCTGCGGTGGTAATGACGTCACAAACCGTACTGTTTGTTCACAATATAA
CCACTGTTGTTTCAACAAAGACAAACAACCGAACTGCTACACTGGAAGAGTAACACTTCA
GGAGATAGAAAAAGCGCGAAACAAAATAACGAAAGTTGAAAAACCAAATGAATCAAACAA
CTCAAACTTTCTGACTTCAATCAATCAACTTCGGCCAATAGGAGAAGACATAGACGAACG
CCTCCTCGTAATCGACCAATCAAACGCCTTCGAAACTGAAATGCCAACTTGCGCTGTGAA
TATCCCGCTTTGTCAGAGAAGCCCTTGTCAACCAAACAACCCACAGTCGCAGGAAAATCC
AATTATTTGTCTCAGCGACCCGACTTGTTGTTTCGACGAAAAGTTGTTCGTGTATAGAGT
CCTGTATGGGGAGGGGTTTATGGGAGGATCCCCTGTGTGCTACAACGGCCCCATTTCTCA
AAAATATCTGTGTGTTGTATGCTCGCTATCGAACAGCCGTTTATATGTTTTTAAATAGGA
ATATCGGAAACGGAATGCCAACTAGTTGGATGTTGTTATTCTACCAAAACCTATCGTTGT
ATTTACCCAAGTCTACAGTTAATGCGACAATTCTTAACTGTTGAGCGATTCCCGCAATTC
ATTACGAATGATGTCACTGAAACGAGGTGTTCTCCTACGACAACTTTCATTCCGAAACTC
TTTCATCGTCTCCCATGTCTCCAAGACAACAACTCCACAAGTAACTCGCGTTCCTTATAC
TCCTGCCCGGATGTTGCTTGCTGTAAAGACGCCTTAGCACTTTTACCAGGAGCAATAGGC
CTTCAAGGACAAACACAACCAGGACAAGTCCAGCCACCCCCTCTTGTCAACGTTGACCCG
TTAGAACTTCTTACAGCTCACTCCAACCCAGGAAGTTCAACTTTAGAAGCGCTCTCAGCA
ATTTATTGTCCGTTTTACTTCTTCCCGGTGCCTGGCTTTCCCGACTTGAGCAGCTCGGCT
GAAGGATGCTGCGTCCGTCACGCTTGCTTCCATCTAAAAGCGACTTCGCTGTATCCGACA
GCTGAAACAACGGTACAGCATTCGTGGTCAACGTGGAGCACATGGGGAGCTTGCGACGTT
ACCTGCGGGACTGGAAGGCGCCAATCCCGGCGGAGTTGTATTTCGACGTCAGGGATGCTG
TTAGTTTCAACTGATCTCTGCCGCGGAGTGAACACGCAGTACCAAGCGTGCACCGTGGGT
CAATGTGGGGCGTCTTGGGCAACTTGGTCAGCGTGGCAGCCATGTGCAGAAACGTGCGGT
GGAGCGTTACGGTCTCGACGTCGGGCGTGCGTCGACATACCTTCAAATCAAACATTAAAT
CCCGACCGCTGCGTTGGACCCGAGTTTGATATGATATCATGTGGAGAATTGCCTTGTGCT
AATTGGGGCTCATGGGGTCAGTACGGGGCATGCAATGCTTCGTGTAACAAACTTGGTGTC
ACGAGTCGACAAAGGGCTTGTTTAACGCCGACAGGTACACACAATCAATCTCTTACATGC
ATTGGTGAAAGTATCGAGTTCAGATCATGCAACGGGCCACAGTGTGACGCTTGGGGCGTT
TGGGGCTCATGGAGCGCTTGCGGGGCTGATTGCGTGCGATCTCGAAGCAAATACTGTGGA
ACGAATTGCGGAACTCAGATTCCAAGTCAGTCTGAACAATGTTATATTGGTTCATGCACA
AGACCAAGACCCTCCCCTTGGGTGGCATGGGGTGGGTGGGGTCAATGGGAAAGCTGCACA
GCCACCTGTGGTGTTGGGAGTCGAATACGAAGAAGAGGTTGTTACTACCTTGGTACGTCT
AAGTGGGTGATGCATCATTCGTTTTGTGGGTTCGTTTACGGATCTTCACTAGTGCTACAG
AGCCAAAGAGGCAGTTGCAACGTCACATGTAGGAACGTTTACACGTGGGGACCGTTCACT
CCGTACAGTCAATGCTCCAATACGTGTGGAAGAGGAATTCAAACCAAAACGAAACGCTGC
TACGATTTATTAGGTTCCCAGGTTTCATCAGACAAGTGCGTGGGAAGTGACGCGTCGTCA
CGTGTTTGTGAGGTCAAGAAGTGCATGATCACGTGGTCTGATTGGTCTCAGTGGAGCTCG
TGTCCTTTTTCTTGCTCGCCACCAAGCGGAAACAAAGGCTCACGTGTCCGGATTAGATGT
AAAGTGCAAGCATTAGAATGCACCGGCGAGAACAGAGAAGTCGACGTCGGTATTTGCCCT
GTAAATGCATGCTGATCCGAACTTTTCCGAAACTTCCCGAACTTTTACAAAAGTTGTTTT
TATCTCGAGTTGCACATTGTGTGCCTTTGAGCAAAATTATGACAGCATTTGTAACGATAT
TATTTATTTGTTTTTGCTTGTTTATTGATTTGCCAGAATAATACATGAAATAAACATGCT
T
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[1-26] 9.587 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[187-244] 3.2E-8 - T[246-301] 1.3E-8 - T[302-357] 1.2E-8 - T[475-530] 3.9E-8 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[187-244] 3.53E-10 - T[247-301] 2.22E-8 - T[303-357] 1.02E-8 - T[411-451] 1.2E-5 - T[477-525] 3.27E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[189-245] 11.216 - T[246-300] 9.225 - T[301-358] 10.509 - T[409-473] 8.872 - T[475-531] 9.898 |
| SMART |
TSP1_rpt (IPR000884) - T[191-245] 3.0E-6 - T[248-302] 3.9E-7 - T[304-358] 2.0E-4 - T[360-402] 0.0014 - T[412-473] 0.041 - T[478-531] 4.5E-6 - T[534-582] 0.039 |
| Pfam |
TSP1_rpt (IPR000884) - T[192-244] 6.0E-6 - T[250-275] 3.6E-4 - T[306-357] 1.4E-4 - T[414-436] 1.9E-5 - T[479-530] 2.4E-7 - T[535-586] 0.012 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 30.861 % | 105 | 2.02E-23 |
| SEM5A_HUMAN | 24.882 % | 84 | 1.06E-16 |
| ATS9_HUMAN | 27.441 % | 87.4 | 1.03E-17 |