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TRANSCRIPT CARD

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  1. Clone 'csga006n06' > 
  2. Transcript 'Cisavi.CG.ENS81.R1.6...' > 
  3. Transcript 'KH2012:KH.C13.151.v1...'

Transcript Model

Transcript Id

KH2012:KH.C13.151.v1.B.ND1-1

Possible name(s)

SMG6; SWT1

Gene model

KH2012:KH.C13.151

Location

KhC13 [1,460,502 / 1,467,421]

Sequences

Amino acid sequence

Length: 570

>KH.C13.151.v1.B.ND1-1
NIKDISSTLMSLQVQVHGRGLLVPTEKSKAQSTSSFKNVGKKRKSGDMLEINTSKTTIAN
NKSDNHQKVKTRKRRKKNKILKQEDTANNNNKITNSSTSDISIDSLFESPGTTNKQQEEN
ARRKQEEYQTLDMPPLIDVEQLAIVSKQSPKQSPLSHNTQKSQLLQNKISYSPSDLKTPT
KVTPKFNPNVTPKFTHNVTPKFTHNITPKVTPKVGSSPRTPSSVTPTKTTPKVTLSRKVT
SNRRRSNIFINPLCDDGNEDNVDEITRPVISPKVVRPIITHHKTPKAQVVKDKDPAEVEV
MDTSDTIYNCKDIPKAIEEKESTPAITNAPPNANAILFIVVDTNILLYSSCLKDIDFIIN
WCPPPRTMFRRAVVVVPWVVLQELDHLKTNKQTAAKARRSIAFLNRHFSCKKPGIRGQTI
LEAAAVVDGLNIEINDDRLLQCCFFFSRLPGKHKTLLFTNDSNLANKAMINSFMSYSNLQ
ALMKGVTEYTSLPNPVLDEEGSTKPVIPTPRGSSTSSIVEEDTPKSMVLQLSLEQMHLAL
CVILETEMREAYGRIWEEVVVKRPPWSLA+

Nucleotide sequence

Length: 1,949

>KH2012:KH.C13.151.v1.B.ND1-1
TAAAACTGCGAAAAATTGTCAGCAATTAAATAGAAATGTAAGGTTTAGAAAATGTTGACA
TCGTTAAAAGCACCAATTTAAATAAAGTAATTTTTTCCATTTAAAAGCTGTTATTAGAGA
ATTGGAACTTCAGCTGTTCAATAAAAATGGGAAATGGCTTCAACTGTTAAAATATCCCCA
AAGGAATTATCCAAAGTACAGAATCAACTCCCACAAGGCTGGGTAGCCAAAGAATCGTTA
AAATATAAAGGACATATCTTCTACTTTAATGTCTCTGCAGGTACAAGTACATGGACGAGG
CCTACTCGTACCTACAGAGAAAAGTAAAGCACAATCTACTTCTTCATTTAAAAATGTTGG
AAAGAAGAGAAAATCTGGAGATATGCTGGAAATAAATACATCTAAAACAACTATTGCAAA
TAACAAAAGTGATAATCACCAAAAAGTAAAAACTAGAAAAAGACGAAAGAAAAATAAAAT
ATTAAAACAAGAAGACACTGCAAATAACAACAACAAGATAACAAACAGTTCAACTAGTGA
TATTTCAATTGACTCTTTATTTGAATCCCCTGGAACTACAAACAAACAACAGGAAGAAAA
TGCAAGAAGAAAACAAGAAGAATACCAAACACTGGACATGCCGCCATTGATTGATGTGGA
ACAATTAGCCATTGTTTCCAAACAATCACCAAAACAATCACCATTATCACATAACACACA
AAAATCACAATTACTGCAAAACAAGATTTCATATTCACCAAGTGACTTAAAAACCCCAAC
CAAAGTCACCCCTAAATTTAACCCCAATGTTACCCCCAAGTTCACCCACAATGTTACCCC
CAAGTTCACCCACAATATTACACCCAAAGTTACCCCTAAAGTTGGCTCATCACCCCGCAC
ACCAAGTAGCGTTACCCCAACCAAAACTACACCAAAAGTAACCCTATCGCGAAAAGTAAC
TTCTAATAGAAGAAGATCAAATATCTTTATAAATCCCTTATGTGATGATGGAAATGAAGA
CAATGTTGATGAAATTACTCGCCCAGTTATCTCTCCAAAAGTTGTAAGACCAATTATCAC
TCATCATAAAACACCTAAAGCTCAAGTTGTTAAGGATAAAGATCCTGCTGAAGTTGAAGT
GATGGACACATCAGATACAATATACAACTGTAAAGATATACCAAAAGCAATAGAAGAGAA
AGAATCCACACCTGCCATTACAAACGCACCTCCCAATGCAAATGCCATCTTATTCATTGT
AGTTGATACAAACATATTGTTGTACTCAAGTTGTTTGAAAGATATTGACTTCATTATTAA
TTGGTGCCCACCTCCAAGGACGATGTTTCGACGAGCTGTTGTTGTTGTGCCTTGGGTTGT
TCTTCAGGAGCTTGACCATTTGAAGACAAACAAACAGACAGCAGCAAAAGCAAGACGATC
AATCGCATTTCTTAATAGACATTTTTCTTGCAAGAAACCTGGAATTCGGGGCCAAACTAT
ATTAGAAGCAGCTGCTGTTGTGGATGGATTAAACATTGAAATAAACGATGACAGACTCCT
ACAATGTTGTTTCTTCTTTTCAAGATTGCCAGGAAAACATAAAACGTTGTTGTTTACAAA
TGATTCAAACCTGGCAAACAAAGCTATGATTAATAGCTTCATGAGTTATTCCAACTTACA
AGCACTAATGAAAGGTGTAACTGAATATACTTCACTTCCTAATCCAGTACTTGATGAAGA
AGGTTCAACAAAACCTGTAATACCAACTCCCAGAGGGTCCTCCACATCCTCTATAGTGGA
GGAAGACACCCCAAAGTCCATGGTCCTCCAGTTATCACTGGAGCAGATGCATCTTGCTCT
CTGTGTGATCCTGGAGACAGAGATGAGGGAAGCATATGGGAGGATTTGGGAGGAAGTTGT
GGTAAAGAGGCCACCATGGAGTTTAGCAG

InterProScan

SMART
PIN_dom (IPR002716) - T[337-466] 1.1E-5
SUPERFAMILY
PIN-like_dom_sf (IPR029060) - T[338-469] 5.43E-8
Pfam
PIN_dom (IPR002716) - T[339-473] 3.0E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SWT1_HUMAN 32.114 % 104 2.09E-23