- Transcript 'KH2012:KH.C13.16.v1....'
Transcript Model
Transcript Id
KH2012:KH.C13.16.v1.A.nonSL2-1
Possible name(s)
ADGRB2; CFP; HMCN1
Gene model
Location
KhC13 [122,218 / 128,939]
Amino acid sequence
Length: 928
>KH.C13.16.v1.A.nonSL2-1
RVDENMRIFGAFCVVALIAIIDRTNGDCSNTDQRQACSSGGNLAQAECRQAGCCFEGSRP
PNCFLNITLIAAIQAVEVLQALPTVTPPDDVEPVKRVASTVGARLDDRTASSEIEQRALG
FGTNSLLGLTLNFPVCPVNVPICQRARCNPTNPLAETNPLICYEDPRCCFDKDLYVHKAI
FGAGYMSNAPVCFYGPTSSRYVDIARLITPWNPFFQEAVIKIYDSAFNNVLNYQQIALCA
LTNAVSLLAKQCGWQGITKKECQLMGCCYSDSNSFCAYPSDQTLGLLPSFPTGAGFASQE
YYPELERPQNPLTCEANNGGIGGIGGIGGIGGIGGIGGIGGIGGIGGIGGIGGIGGIGGG
NFINPTTPSMFDRLPCKSTTTGTDAIFNTLLTCPTVGCCTNNYALISTIGNFSLFGYTAF
GFCPYFYFPITGLPDLTSKLTNCCNLHACYHPRSSGRGSNGGGFYASWGVWGAYGACSGA
CGSTGQQIRSRSCTRNGQSAAGQCQGAATSSRPCTAPTCSNWGLWGGFGACQGSCGQLGT
QYRRRVCRGYNNQPSNTCPGASQSSRRCTVPSCSNWQAWGAFGPCDGQCGQLGTQVRQRS
CVDRFNRPSQTCIGSATSSRRCQLPACATWGIWGAYGNCQASCGAIGTQTRFRTCTGVTG
APSNQCGGSASQNRNCRAPSCPAVWGNWRSWGGCQLDCTRTRQRSCTVGGRPTTSNRCSG
SDSERRTCPGDCLSQEPPNGQPWVSWGSYSGYGLCTGTGTCGVGSQTRYRRCFYLGRPDS
RIGNDYCTFTYPQTQASESRSCNRNPCPTQSTYTWTIWSSFSQCNSPPGSCQGMQTSSRT
CINPVTQQQVGSVHCRPGVDTRTQSCNSCSTGSQPPTYGQWSNWGNCGVSCTRTRARCRT
GSNCRLASDWDVDSESCNCNLQQCIGRC
Nucleotide sequence
Length: 3,069
>KH2012:KH.C13.16.v1.A.nonSL2-1
ACGACCGCGAAAGATTGTCTTTACGTTTTACTGCAACTTGCTCAATCTATAACGAGTGTA
ACGAGTAGATGAAAATATGAGGATATTTGGGGCTTTCTGTGTTGTGGCCTTGATTGCAAT
TATTGATCGAACGAACGGAGATTGTTCCAACACAGATCAACGTCAGGCATGTTCTAGTGG
CGGTAACCTCGCTCAAGCTGAATGCAGACAAGCCGGTTGCTGCTTTGAAGGCAGCAGACC
GCCAAACTGTTTCTTAAACATCACGCTTATCGCTGCCATACAAGCCGTCGAAGTATTACA
AGCATTGCCGACCGTAACACCGCCAGACGATGTTGAACCGGTCAAACGAGTGGCGTCGAC
AGTCGGAGCGAGATTGGACGATAGGACGGCCAGTTCTGAGATCGAACAACGAGCCCTCGG
ATTCGGAACGAACAGTCTTCTTGGATTGACTCTTAACTTCCCTGTGTGTCCAGTAAACGT
TCCTATCTGCCAAAGAGCGAGGTGCAACCCCACGAACCCCCTTGCTGAAACGAACCCTCT
TATTTGTTACGAGGACCCTAGATGCTGCTTCGATAAAGACCTTTACGTCCACAAAGCCAT
ATTCGGCGCCGGGTATATGTCGAATGCTCCCGTGTGTTTCTACGGGCCTACATCATCCAG
ATACGTTGACATCGCGCGGTTGATCACACCGTGGAATCCCTTCTTCCAGGAGGCGGTAAT
TAAAATTTACGATTCCGCGTTCAACAACGTGCTCAACTACCAACAAATAGCGCTGTGTGC
CCTCACAAATGCAGTTAGTTTGTTAGCCAAACAATGCGGATGGCAAGGAATCACAAAGAA
AGAATGTCAGCTGATGGGTTGTTGCTACTCTGATTCCAACAGTTTCTGTGCTTATCCCTC
CGACCAAACATTAGGATTACTTCCTTCGTTTCCCACGGGCGCTGGATTTGCTTCCCAGGA
ATATTATCCAGAACTTGAGAGGCCTCAAAACCCACTTACGTGCGAAGCGAATAATGGTGG
AATTGGCGGAATTGGCGGCATAGGTGGAATTGGTGGAATTGGCGGCATTGGTGGAATTGG
AGGCATAGGTGGAATTGGAGGCATTGGTGGAATTGGTGGAATTGGGGGCATTGGTGGGGG
TAATTTCATTAACCCGACAACCCCCAGCATGTTCGATCGTCTTCCATGCAAATCCACAAC
AACAGGAACAGATGCCATCTTTAACACCTTACTTACTTGTCCAACTGTTGGGTGTTGCAC
CAATAATTATGCGCTGATATCAACCATTGGAAACTTCAGTCTTTTCGGTTACACTGCCTT
TGGATTCTGCCCTTACTTCTATTTTCCAATCACGGGACTCCCTGATCTTACATCAAAACT
TACGAACTGCTGTAACCTTCATGCTTGCTACCATCCAAGGAGTTCTGGTCGTGGTAGTAA
CGGCGGTGGCTTCTACGCCTCATGGGGCGTGTGGGGAGCCTATGGTGCATGTAGTGGTGC
TTGTGGGAGTACTGGCCAGCAAATCCGAAGCAGAAGTTGCACCAGGAATGGACAATCCGC
TGCTGGCCAATGTCAAGGTGCGGCTACGAGTTCAAGACCATGCACGGCGCCGACTTGTTC
GAATTGGGGGCTGTGGGGAGGATTTGGTGCATGCCAAGGCTCATGCGGACAACTTGGAAC
GCAATATAGAAGAAGAGTATGTCGGGGTTACAACAATCAGCCCTCAAATACTTGCCCAGG
GGCATCACAAAGCAGTAGAAGATGTACCGTTCCTTCGTGTTCAAATTGGCAGGCATGGGG
AGCATTCGGCCCTTGTGACGGACAGTGTGGACAGCTCGGAACACAAGTAAGGCAAAGGTC
CTGCGTAGATAGATTCAACAGGCCATCGCAAACCTGTATTGGAAGTGCAACTAGTTCCCG
TCGTTGTCAATTGCCAGCGTGTGCTACCTGGGGTATTTGGGGTGCGTATGGAAACTGCCA
GGCATCGTGTGGCGCGATTGGGACTCAAACACGATTCAGAACCTGCACTGGTGTAACCGG
GGCACCTTCCAACCAATGCGGTGGGTCAGCAAGTCAAAACAGGAACTGCAGAGCTCCGTC
TTGCCCTGCGGTGTGGGGTAACTGGAGGTCTTGGGGTGGTTGCCAATTAGACTGCACTAG
AACAAGACAACGAAGCTGTACTGTTGGTGGGAGACCAACTACCTCAAATCGGTGCTCAGG
TTCAGATAGCGAGAGAAGAACCTGTCCAGGTGATTGCTTGAGCCAGGAGCCACCTAACGG
TCAACCCTGGGTGAGCTGGGGGTCGTACAGCGGGTACGGACTTTGTACAGGCACAGGTAC
ATGTGGTGTTGGTTCTCAAACCAGATACAGAAGATGTTTCTACCTTGGAAGACCCGACTC
CCGGATCGGCAACGATTACTGTACATTCACATACCCGCAAACTCAAGCAAGCGAAAGTCG
ATCTTGTAATAGGAATCCATGCCCTACCCAATCTACCTACACGTGGACAATCTGGTCGTC
TTTTTCACAATGTAACTCACCGCCTGGTAGCTGCCAAGGAATGCAAACCTCATCAAGGAC
ATGCATTAATCCAGTTACTCAACAACAGGTTGGATCGGTACATTGCCGACCAGGAGTGGA
TACCAGAACCCAAAGTTGCAACTCGTGTTCAACAGGATCCCAACCTCCAACATATGGCCA
ATGGTCAAACTGGGGAAATTGTGGAGTCTCATGCACGAGGACAAGAGCGAGATGCCGAAC
CGGAAGCAATTGTCGCTTGGCTTCTGATTGGGACGTTGACAGCGAGTCGTGCAACTGCAA
CCTACAACAGTGTATCGGCCGTTGCTAATCTAGATGCTAACCCTTTCATAAACCCTTCTT
GAAACTAGAAACATTCCGTCAAAAGAAGTTTCTAACGTTTTTTTTCCAAGAACAAGCTCT
ATATGAAGAGTTTTTTGAATAAAATAAAGATATCTTTGTTATATTTTCTCTAACGAATTA
TGTACATGTTGTGACATCAGCATTTGACGTAATAAACAATATTCAATACCGTGGTTGTTC
GACAGATAC
| ProSiteProfiles |
P_trefoil_dom (IPR000519) - T[26-67] 10.641 - T[237-280] 10.869 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[465-518] 9.679 - T[519-574] 10.807 - T[576-626] 8.451 - T[627-682] 9.818 - T[683-733] 8.396 - T[743-808] 8.947 - T[812-870] 8.847 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[465-519] 4.6E-6 - T[520-573] 3.0E-5 - T[574-627] 6.1E-6 - T[628-682] 1.6E-7 - T[742-808] 6.8E-6 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[467-519] 1.05E-6 - T[521-573] 1.7E-6 - T[576-627] 1.09E-6 - T[627-676] 6.93E-7 |
| SMART |
TSP1_rpt (IPR000884) - T[468-520] 0.0012 - T[522-574] 0.0029 - T[576-628] 7.6E-4 - T[630-682] 0.0061 - T[685-733] 0.28 - T[746-808] 0.0015 - T[815-870] 0.18 - T[878-925] 0.11 |
| Pfam |
TSP1_rpt (IPR000884) - T[470-519] 3.1E-6 - T[524-573] 0.0021 - T[578-627] 3.1E-4 - T[632-681] 8.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 32.121 % | 103 | 2.36E-22 |
| AGRB2_HUMAN | 33.48 % | 92.8 | 5.74E-19 |
| PROP_HUMAN | 33.091 % | 91.7 | 3.37E-19 |