- Transcript 'Boleac.CG.SB_v3.S747...' >
- Transcript 'KH2012:KH.C8.254.v1....' >
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- Transcript 'KH2012:KH.C1.334.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.334.v1.A.SL2-1
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
KhC1 [4,895,078 / 4,907,294]
Amino acid sequence
Length: 1,024
>KH.C1.334.v1.A.SL2-1
LLAQIIFIIANMKKEQKDFLLHWENLFKQFLIPQKFASAFPEWDIWDRWSNENEETKVQI
FLDKLRDSEESGIFKRFIDNLRHCSEQKWIFDLIDGKLDPKEQIKCFKHVVVAPQLKTLF
KLLEKDYEIVDARSMIAEFTAYFTTAEKDWLLAIDRDRGNAPAMTAFFSIMTRKHPKWLK
EFYDSLNENKYHHPDSPTLAESFQQYIKLEEKRDGEASIAVTEDNDQTVPEPMDQACALP
PVEVIQEDNEECGTSFLLCMDLLNNLSPFEEDCNSNNDSLNNFNVMAVEEAMETCTSEDV
CQEESLPELNLRDYQLELAEQAMSGENSLIVAPTGSGKTFVALKVCKDHIEKRPDSRVVF
MVPRVPLIKQQYELFKCFLGDGQGILRAISTDETLSAPADRLILDHKISFLTPQILVNLL
RQDPSFINKLGLLIFDECHHTVKGDPYNSIMKIYHDNLLKNRRLDILPQIVGLTASPGVG
SAKSDEAAAKNIKTLLANLNVTTAPIEVQKHKKNLNQYENEAKYELKPIKRQQSEFRTKI
RLVMDKIETKLKLEFRRNDNATKGMKFDLKAMSGTQDYEAWVVSFYKKSTLLVDPNLSQR
FMAYARYLWKYNSSLWINDHVQSRHAKEYLEEELPLIQPRTPVEAELKKLHDEIVPEIME
ENNPMINALYKILKTEFTKQPESKCIIFVRTRPIAKALITCIEESEVEKLHLNPKQLTGA
GAAVELGGMTKATQEDTIASFRDGRCKVIVATSVAEEGLDIKACNLIITYNYSTNEIGQV
QRQGRGRAKGSKMIILAYDDSSHIQREKSNIIRVKFTHDILQMLRQMDPEQLKKDIKKIQ
IRLKEDRGLEKLSAEFQSFKKHPSGNNIWTLLCKGCKTEVTKSDQFRHIEKQHHVVVDPK
FEDKASCREVPIEQGKPVGFEQVIIGKVYCKECGHDWGVRMCHKKCPISVLKIAGFVLTC
GEERVEKKKWKDSPFSVKKELAEADLRNILEHRKNKNGQNVENEEEDSDEEDIYGDIGNQ
VLSS
Nucleotide sequence
Length: 3,990
>KH2012:KH.C1.334.v1.A.SL2-1
TTTATTAGCCCAGATTATTTTTATCATTGCAAACATGAAGAAAGAACAGAAAGATTTTCT
TCTACATTGGGAGAATCTGTTTAAACAATTTCTTATTCCACAAAAATTTGCATCGGCATT
TCCAGAGTGGGATATATGGGACAGATGGTCGAATGAAAATGAAGAAACTAAAGTTCAAAT
CTTTCTGGATAAACTTAGAGATTCAGAGGAATCTGGAATATTCAAAAGATTTATTGATAA
TCTGAGACACTGCAGTGAACAGAAGTGGATATTTGACTTAATTGATGGGAAACTGGATCC
TAAAGAGCAAATTAAATGCTTCAAACATGTGGTGGTAGCACCACAGTTAAAAACACTGTT
TAAGCTGCTTGAAAAAGATTATGAAATAGTAGATGCCAGAAGTATGATAGCTGAATTTAC
TGCGTATTTCACTACAGCTGAAAAGGATTGGCTTTTAGCAATTGATAGAGATCGTGGTAA
TGCCCCTGCAATGACTGCATTCTTTTCAATTATGACCCGCAAGCATCCTAAGTGGTTGAA
AGAATTTTATGATTCTCTCAATGAAAATAAATACCATCATCCAGATTCACCTACTCTTGC
TGAATCATTTCAGCAATACATTAAGTTAGAGGAAAAAAGAGATGGAGAAGCAAGCATTGC
TGTTACTGAAGATAATGATCAAACTGTCCCTGAGCCCATGGACCAAGCTTGTGCATTGCC
ACCTGTTGAAGTAATACAAGAAGATAATGAAGAGTGTGGAACATCTTTTTTGTTGTGCAT
GGACCTACTGAACAATCTGAGCCCTTTTGAAGAAGACTGTAATTCAAATAATGATTCTTT
AAACAACTTCAATGTTATGGCTGTAGAAGAAGCAATGGAGACATGTACATCAGAAGATGT
ATGTCAAGAAGAGTCGCTACCTGAGTTAAATTTAAGAGACTATCAGCTTGAATTGGCAGA
GCAAGCCATGTCTGGTGAAAACTCACTTATTGTTGCACCTACAGGTAGTGGAAAAACATT
TGTTGCACTAAAGGTTTGTAAAGATCACATTGAAAAGAGACCCGACAGCAGGGTGGTGTT
TATGGTTCCAAGAGTTCCTCTTATCAAGCAGCAATATGAACTTTTCAAATGTTTTCTTGG
TGATGGTCAAGGGATCTTGAGAGCAATTTCAACAGATGAAACACTAAGTGCTCCAGCTGA
CCGTTTAATTCTAGATCATAAAATAAGTTTTCTGACGCCTCAGATTCTTGTTAACTTGCT
GAGGCAGGATCCCTCTTTTATCAATAAGCTTGGTTTGTTGATTTTTGATGAATGTCACCA
CACTGTCAAGGGCGATCCATACAACAGCATCATGAAAATATATCATGATAACTTGCTGAA
GAATAGAAGACTGGACATCCTACCACAAATTGTTGGTCTTACTGCATCTCCTGGTGTGGG
TTCTGCTAAAAGTGATGAAGCTGCAGCAAAAAACATCAAAACGTTGTTGGCCAATTTGAA
CGTTACAACTGCCCCTATTGAAGTGCAAAAGCACAAGAAAAACCTAAACCAGTACGAAAA
TGAAGCAAAATATGAGCTTAAGCCCATTAAGAGACAACAATCGGAGTTCAGAACAAAAAT
AAGGTTGGTAATGGACAAGATTGAGACAAAACTTAAGCTGGAATTTCGCAGGAATGATAA
CGCAACAAAAGGAATGAAGTTTGACCTAAAAGCAATGTCAGGAACCCAAGATTATGAGGC
TTGGGTTGTATCGTTTTATAAGAAGAGCACATTGCTAGTGGATCCGAACTTAAGCCAACG
TTTCATGGCATATGCTCGCTACCTATGGAAATACAACAGTTCTTTGTGGATCAATGACCA
TGTACAGAGCAGGCATGCAAAAGAATATTTAGAAGAAGAACTTCCTCTTATACAGCCAAG
AACTCCCGTTGAGGCAGAATTGAAGAAACTTCATGATGAAATTGTGCCTGAAATAATGGA
AGAAAACAACCCGATGATTAATGCTTTATACAAAATTCTTAAAACTGAGTTCACCAAACA
ACCTGAATCGAAATGCATCATATTTGTTCGCACAAGACCCATTGCCAAAGCCCTCATAAC
TTGCATTGAAGAAAGTGAAGTGGAAAAACTTCATCTTAATCCAAAGCAACTCACAGGAGC
TGGTGCTGCAGTTGAACTAGGAGGCATGACAAAAGCCACACAAGAAGATACAATTGCTTC
ATTTAGAGATGGCAGATGTAAAGTGATTGTAGCAACATCAGTAGCAGAGGAAGGATTAGA
CATCAAAGCTTGTAATCTGATCATCACTTATAATTACTCCACTAATGAAATAGGACAAGT
GCAAAGACAAGGTAGGGGAAGAGCCAAAGGAAGCAAGATGATCATTCTGGCATACGATGA
CAGTAGCCACATCCAACGAGAAAAAAGTAACATAATTCGTGTGAAGTTCACGCACGATAT
ACTGCAGATGTTACGACAAATGGATCCAGAACAACTTAAGAAAGATATTAAAAAAATTCA
AATACGGTTAAAGGAAGACCGTGGTTTGGAAAAGTTGTCTGCTGAGTTTCAGAGTTTCAA
AAAACATCCTAGTGGGAACAACATTTGGACTCTCTTGTGTAAGGGATGTAAAACTGAAGT
CACAAAATCAGATCAGTTCCGACACATTGAAAAGCAGCACCATGTGGTTGTGGATCCTAA
GTTTGAAGATAAAGCATCTTGTCGTGAAGTACCTATAGAACAAGGGAAACCCGTGGGATT
TGAACAAGTTATTATCGGAAAGGTTTACTGCAAAGAATGCGGGCATGACTGGGGTGTTCG
CATGTGCCACAAAAAATGTCCCATCTCTGTACTTAAAATCGCGGGCTTTGTGCTGACGTG
CGGAGAGGAGAGAGTGGAGAAGAAAAAATGGAAAGATTCGCCTTTTTCTGTTAAAAAAGA
GCTAGCAGAAGCAGATTTAAGAAATATTTTGGAACACAGAAAAAACAAAAATGGACAAAA
TGTAGAAAATGAGGAAGAAGACAGTGATGAAGAGGATATTTATGGTGACATTGGAAACCA
AGTGTTGAGTTCCTAAATTTAAACCTCAACTGTCACACATAACATTAATTTGATCTCTTC
AAATACAACACTAAAGATCAGATTAGTTCCAACCTCGAAGAAAATTAAATCTACTGTTCC
AAAAATTTTAATTTTGTAAATATTCTGATCATCAGATTTGTTAATATTTTTATTAGCTTG
TATGATTTTTCAACTTATCTGCATTGCGCTTATGTATTGTAGTTAATTTTTGTAAAGCTC
CCTACTTAGATTTTATTTTTCAAAGTATAATTGTTGTATTGTAGAACTTTGGTTAAGGAA
TTAAATAGCAGCGGTTTTACCGTTTGCACTCATTTACTTACTGTTTCAAACCCACTTTAC
TTTGGTGCAGTAACACAGTGGTTTATCCAATACTTCTAACCACTGTGCTACTGCACCATA
GTGACTTAAAGTTTCCTAGCATACGTAATTTCAATGGCTATATGGAAATTTGTTAACTGT
GTGCCAGTAAGCGTATATGCGTTGGTTGGGTGTCTGTTTAAATTAAACCTTTTTTTGCGT
TAAATAAGTCATTTTTTAACAGCCATTGACTTTATAGTCATTGTTTCAATTCACTAATGG
ATTGTCCAAGTTGCCACCCACAGAATAATTGGCTGGGTACCGAAATCCTTTTTTTTTTCA
AATAAGTGAAGAACTATTTTTATAGTGATTCTTCTAATGTGCATGGCTGTAAGTGTTCAA
ATTTTCAAATGAAAAAAGCTATTTCCAGTTTATCACTTTTTAAAAAAAATTTTAGCTCTA
TTTTGCCTTTTTTTCCGCATGTTAGTAAGAATGTGGGTGTTTAACTTAATAATAAAGTTG
TAATTGTTGGGTTAACTCTTGTTGATATTACCAGCTTGTGGCCTCTTCTGTTTTTAATAA
AACGTCGTTACCCATAATAAGGAAATAAAT
| SMART |
Helicase_ATP-bd (IPR014001) - T[307-509] 4.7E-23 |
| Pfam |
Helicase/UvrB_N (IPR006935) - T[309-477] 2.3E-19 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[319-495] 21.958 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[321-480] 1.19E-39 - T[648-787] 1.19E-39 |
| SMART |
AAA+_ATPase (IPR003593) - T[324-471] 0.0017 |
| CDD |
Helicase_C (IPR001650) - T[653-796] 1.79354E-14 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[665-847] 15.752 |
| Pfam |
Helicase_C (IPR001650) - T[667-788] 2.0E-17 |
| SMART |
Helicase_C (IPR001650) - T[704-789] 4.5E-13 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[857-987] 28.646 |
| Gene3D |
RLR_C_sf (IPR038557) - T[860-997] 1.2E-29 |
| Pfam |
RLR_CTR (IPR021673) - T[870-979] 2.2E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 31.069 % | 269 | 3.66E-78 |
| DDX58_HUMAN | 32.869 % | 309 | 2.24E-90 |
| IFIH1_HUMAN | 32.027 % | 303 | 1.64E-87 |