- Region 'REG00000834' >
- Clone 'cien52763' >
- Clone 'ma154b12' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C1.334.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.334.v1.A.SL3-1
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
KhC1 [4,895,014 / 4,907,294]
Amino acid sequence
Length: 1,030
>KH.C1.334.v1.A.SL3-1
NNFLSSLLAQIIFIIANMKKEQKDFLLHWENLFKQFLIPQKFASAFPEWDIWDRWSNENE
ETKVQIFLDKLRDSEESGIFKRFIDNLRHCSEQKWIFDLIDGKLDPKEQIKCFKHVVVAP
QLKTLFKLLEKDYEIVDARSMIAEFTAYFTTAEKDWLLAIDRDRGNAPAMTAFFSIMTRK
HPKWLKEFYDSLNENKYHHPDSPTLAESFQQYIKLEEKRDGEASIAVTEDNDQTVPEPMD
QACALPPVEVIQEDNEECGTSFLLCMDLLNNLSPFEEDCNSNNDSLNNFNVMAVEEAMET
CTSEDVCQEESLPELNLRDYQLELAEQAMSGENSLIVAPTGSGKTFVALKVCKDHIEKRP
DSRVVFMVPRVPLIKQQYELFKCFLGDGQGILRAISTDETLSAPADRLILDHKISFLTPQ
ILVNLLRQDPSFINKLGLLIFDECHHTVKGDPYNSIMKIYHDNLLKNRRLDILPQIVGLT
ASPGVGSAKSDEAAAKNIKTLLANLNVTTAPIEVQKHKKNLNQYENEAKYELKPIKRQQS
EFRTKIRLVMDKIETKLKLEFRRNDNATKGMKFDLKAMSGTQDYEAWVVSFYKKSTLLVD
PNLSQRFMAYARYLWKYNSSLWINDHVQSRHAKEYLEEELPLIQPRTPVEAELKKLHDEI
VPEIMEENNPMINALYKILKTEFTKQPESKCIIFVRTRPIAKALITCIEESEVEKLHLNP
KQLTGAGAAVELGGMTKATQEDTIASFRDGRCKVIVATSVAEEGLDIKACNLIITYNYST
NEIGQVQRQGRGRAKGSKMIILAYDDSSHIQREKSNIIRVKFTHDILQMLRQMDPEQLKK
DIKKIQIRLKEDRGLEKLSAEFQSFKKHPSGNNIWTLLCKGCKTEVTKSDQFRHIEKQHH
VVVDPKFEDKASCREVPIEQGKPVGFEQVIIGKVYCKECGHDWGVRMCHKKCPISVLKIA
GFVLTCGEERVEKKKWKDSPFSVKKELAEADLRNILEHRKNKNGQNVENEEEDSDEEDIY
GDIGNQVLSS
Nucleotide sequence
Length: 4,054
>KH2012:KH.C1.334.v1.A.SL3-1
TGCGGTTACTGTATTCGAAAAATTAAGTAAAATTCCAACAAAGTTGAAATAACTTTTTAT
CTAGTTTATTAGCCCAGATTATTTTTATCATTGCAAACATGAAGAAAGAACAGAAAGATT
TTCTTCTACATTGGGAGAATCTGTTTAAACAATTTCTTATTCCACAAAAATTTGCATCGG
CATTTCCAGAGTGGGATATATGGGACAGATGGTCGAATGAAAATGAAGAAACTAAAGTTC
AAATCTTTCTGGATAAACTTAGAGATTCAGAGGAATCTGGAATATTCAAAAGATTTATTG
ATAATCTGAGACACTGCAGTGAACAGAAGTGGATATTTGACTTAATTGATGGGAAACTGG
ATCCTAAAGAGCAAATTAAATGCTTCAAACATGTGGTGGTAGCACCACAGTTAAAAACAC
TGTTTAAGCTGCTTGAAAAAGATTATGAAATAGTAGATGCCAGAAGTATGATAGCTGAAT
TTACTGCGTATTTCACTACAGCTGAAAAGGATTGGCTTTTAGCAATTGATAGAGATCGTG
GTAATGCCCCTGCAATGACTGCATTCTTTTCAATTATGACCCGCAAGCATCCTAAGTGGT
TGAAAGAATTTTATGATTCTCTCAATGAAAATAAATACCATCATCCAGATTCACCTACTC
TTGCTGAATCATTTCAGCAATACATTAAGTTAGAGGAAAAAAGAGATGGAGAAGCAAGCA
TTGCTGTTACTGAAGATAATGATCAAACTGTCCCTGAGCCCATGGACCAAGCTTGTGCAT
TGCCACCTGTTGAAGTAATACAAGAAGATAATGAAGAGTGTGGAACATCTTTTTTGTTGT
GCATGGACCTACTGAACAATCTGAGCCCTTTTGAAGAAGACTGTAATTCAAATAATGATT
CTTTAAACAACTTCAATGTTATGGCTGTAGAAGAAGCAATGGAGACATGTACATCAGAAG
ATGTATGTCAAGAAGAGTCGCTACCTGAGTTAAATTTAAGAGACTATCAGCTTGAATTGG
CAGAGCAAGCCATGTCTGGTGAAAACTCACTTATTGTTGCACCTACAGGTAGTGGAAAAA
CATTTGTTGCACTAAAGGTTTGTAAAGATCACATTGAAAAGAGACCCGACAGCAGGGTGG
TGTTTATGGTTCCAAGAGTTCCTCTTATCAAGCAGCAATATGAACTTTTCAAATGTTTTC
TTGGTGATGGTCAAGGGATCTTGAGAGCAATTTCAACAGATGAAACACTAAGTGCTCCAG
CTGACCGTTTAATTCTAGATCATAAAATAAGTTTTCTGACGCCTCAGATTCTTGTTAACT
TGCTGAGGCAGGATCCCTCTTTTATCAATAAGCTTGGTTTGTTGATTTTTGATGAATGTC
ACCACACTGTCAAGGGCGATCCATACAACAGCATCATGAAAATATATCATGATAACTTGC
TGAAGAATAGAAGACTGGACATCCTACCACAAATTGTTGGTCTTACTGCATCTCCTGGTG
TGGGTTCTGCTAAAAGTGATGAAGCTGCAGCAAAAAACATCAAAACGTTGTTGGCCAATT
TGAACGTTACAACTGCCCCTATTGAAGTGCAAAAGCACAAGAAAAACCTAAACCAGTACG
AAAATGAAGCAAAATATGAGCTTAAGCCCATTAAGAGACAACAATCGGAGTTCAGAACAA
AAATAAGGTTGGTAATGGACAAGATTGAGACAAAACTTAAGCTGGAATTTCGCAGGAATG
ATAACGCAACAAAAGGAATGAAGTTTGACCTAAAAGCAATGTCAGGAACCCAAGATTATG
AGGCTTGGGTTGTATCGTTTTATAAGAAGAGCACATTGCTAGTGGATCCGAACTTAAGCC
AACGTTTCATGGCATATGCTCGCTACCTATGGAAATACAACAGTTCTTTGTGGATCAATG
ACCATGTACAGAGCAGGCATGCAAAAGAATATTTAGAAGAAGAACTTCCTCTTATACAGC
CAAGAACTCCCGTTGAGGCAGAATTGAAGAAACTTCATGATGAAATTGTGCCTGAAATAA
TGGAAGAAAACAACCCGATGATTAATGCTTTATACAAAATTCTTAAAACTGAGTTCACCA
AACAACCTGAATCGAAATGCATCATATTTGTTCGCACAAGACCCATTGCCAAAGCCCTCA
TAACTTGCATTGAAGAAAGTGAAGTGGAAAAACTTCATCTTAATCCAAAGCAACTCACAG
GAGCTGGTGCTGCAGTTGAACTAGGAGGCATGACAAAAGCCACACAAGAAGATACAATTG
CTTCATTTAGAGATGGCAGATGTAAAGTGATTGTAGCAACATCAGTAGCAGAGGAAGGAT
TAGACATCAAAGCTTGTAATCTGATCATCACTTATAATTACTCCACTAATGAAATAGGAC
AAGTGCAAAGACAAGGTAGGGGAAGAGCCAAAGGAAGCAAGATGATCATTCTGGCATACG
ATGACAGTAGCCACATCCAACGAGAAAAAAGTAACATAATTCGTGTGAAGTTCACGCACG
ATATACTGCAGATGTTACGACAAATGGATCCAGAACAACTTAAGAAAGATATTAAAAAAA
TTCAAATACGGTTAAAGGAAGACCGTGGTTTGGAAAAGTTGTCTGCTGAGTTTCAGAGTT
TCAAAAAACATCCTAGTGGGAACAACATTTGGACTCTCTTGTGTAAGGGATGTAAAACTG
AAGTCACAAAATCAGATCAGTTCCGACACATTGAAAAGCAGCACCATGTGGTTGTGGATC
CTAAGTTTGAAGATAAAGCATCTTGTCGTGAAGTACCTATAGAACAAGGGAAACCCGTGG
GATTTGAACAAGTTATTATCGGAAAGGTTTACTGCAAAGAATGCGGGCATGACTGGGGTG
TTCGCATGTGCCACAAAAAATGTCCCATCTCTGTACTTAAAATCGCGGGCTTTGTGCTGA
CGTGCGGAGAGGAGAGAGTGGAGAAGAAAAAATGGAAAGATTCGCCTTTTTCTGTTAAAA
AAGAGCTAGCAGAAGCAGATTTAAGAAATATTTTGGAACACAGAAAAAACAAAAATGGAC
AAAATGTAGAAAATGAGGAAGAAGACAGTGATGAAGAGGATATTTATGGTGACATTGGAA
ACCAAGTGTTGAGTTCCTAAATTTAAACCTCAACTGTCACACATAACATTAATTTGATCT
CTTCAAATACAACACTAAAGATCAGATTAGTTCCAACCTCGAAGAAAATTAAATCTACTG
TTCCAAAAATTTTAATTTTGTAAATATTCTGATCATCAGATTTGTTAATATTTTTATTAG
CTTGTATGATTTTTCAACTTATCTGCATTGCGCTTATGTATTGTAGTTAATTTTTGTAAA
GCTCCCTACTTAGATTTTATTTTTCAAAGTATAATTGTTGTATTGTAGAACTTTGGTTAA
GGAATTAAATAGCAGCGGTTTTACCGTTTGCACTCATTTACTTACTGTTTCAAACCCACT
TTACTTTGGTGCAGTAACACAGTGGTTTATCCAATACTTCTAACCACTGTGCTACTGCAC
CATAGTGACTTAAAGTTTCCTAGCATACGTAATTTCAATGGCTATATGGAAATTTGTTAA
CTGTGTGCCAGTAAGCGTATATGCGTTGGTTGGGTGTCTGTTTAAATTAAACCTTTTTTT
GCGTTAAATAAGTCATTTTTTAACAGCCATTGACTTTATAGTCATTGTTTCAATTCACTA
ATGGATTGTCCAAGTTGCCACCCACAGAATAATTGGCTGGGTACCGAAATCCTTTTTTTT
TTCAAATAAGTGAAGAACTATTTTTATAGTGATTCTTCTAATGTGCATGGCTGTAAGTGT
TCAAATTTTCAAATGAAAAAAGCTATTTCCAGTTTATCACTTTTTAAAAAAAATTTTAGC
TCTATTTTGCCTTTTTTTCCGCATGTTAGTAAGAATGTGGGTGTTTAACTTAATAATAAA
GTTGTAATTGTTGGGTTAACTCTTGTTGATATTACCAGCTTGTGGCCTCTTCTGTTTTTA
ATAAAACGTCGTTACCCATAATAAGGAAATAAAT
| SMART |
Helicase_ATP-bd (IPR014001) - T[313-515] 4.7E-23 |
| Pfam |
Helicase/UvrB_N (IPR006935) - T[315-483] 2.4E-19 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[325-501] 21.958 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[327-486] 1.19E-39 - T[654-793] 1.19E-39 |
| SMART |
AAA+_ATPase (IPR003593) - T[330-477] 0.0017 |
| CDD |
Helicase_C (IPR001650) - T[659-802] 1.67027E-14 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[671-853] 15.752 |
| Pfam |
Helicase_C (IPR001650) - T[673-794] 2.0E-17 |
| SMART |
Helicase_C (IPR001650) - T[710-795] 4.5E-13 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[863-993] 28.646 |
| Gene3D |
RLR_C_sf (IPR038557) - T[866-1003] 1.2E-29 |
| Pfam |
RLR_CTR (IPR021673) - T[876-985] 2.2E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 31.069 % | 269 | 6.2E-78 |
| DDX58_HUMAN | 32.869 % | 308 | 3.42E-90 |
| IFIH1_HUMAN | 32.027 % | 303 | 2.34E-87 |