- Transcript 'Phmamm.CG.MTP2014.S7...' >
- Clone 'AHC0AAA189YE14' >
- Transcript 'KH2012:KH.C12.696.v1...' >
- Transcript 'Cisavi.CG.ENS81.R44....' >
- Transcript 'KH2012:KH.C1.334.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.334.v1.R.ND1-1
Possible name(s)
DDX58; DHX58; IFIH1
Gene model
Location
KhC1 [4,895,017 / 4,907,294]
Amino acid sequence
Length: 1,030
>KH.C1.334.v1.R.ND1-1
NNFLSSLLAQIIFIIANMKKEQKDFLLHWENLFKQFLIPQKFASAFPEWDIWDRWSNENE
ETKVQIFLDKLRDSEESGIFKRFIDNLRHCSEQKWIFDLIDGKLDPKEQIKCFKHVVVAP
QLKTLFKLLEKDYEIVDARSMIAEFTAYFTTAEKDWLLAIDRDRGNAPAMTAFFSIMTRK
HPKWLKEFYDSLNENKYHHPDSPTLAESFQQYIKLEEKRDGEASIAVTEDNDQTVPEPMD
QACALPPVEVIQEDNEECGTSFLLCMDLLNNLSPFEEDCNSNNDSLNNFNVMAVEEAMET
CTSEDVCQEESLPELNLRDYQLELAEQAMSGENSLIVAPTGSGKTFVALKVCKDHIEKRP
DSRVVFMVPRVPLIKQQYELFKCFLGDGQGILRAISTDETLSAPADRLILDHKISFLTPQ
ILVNLLRQDPSFINKLGLLIFDECHHTVKGDPYNSIMKIYHDNLLKNRRLDILPQIVGLT
ASPGVGSAKSDEAAAKNIKTLLANLNVTTAPIEVQKHKKNLNQYENEAKYELKPIKRQQS
EFRTKIRLVMDKIETKLKLEFRRNDNATKGMKFDLKAMSGTQDYEAWVVSFYKKSTLLVD
PNLSQRFMAYARYLWKYNSSLWINDHVQSRHAKEYLEEELPLIQPRTPVEAELKKLHDEI
VPEIMEENNPMINALYKILKTEFTKQPESKCIIFVRTRPIAKALITCIEESEVEKLHLNP
KQLTGAGAAVELGGMTKATQEDTIASFRDGRCKVIVATSVAEEGLDIKACNLIITYNYST
NEIGQVQRQGRGRAKGSKMIILAYDDSSHIQREKSNIIRVKFTHDILQMLRQMDPEQLKK
DIKKIQIRLKEDRGLEKLSAEFQSFKKHPSGNNIWTLLCKGCKTEVTKSDQFRHIEKQHH
VVVDPKFEDKASCREVPIEQGKPVGFEQVIIGKVYCKECGHDWGVRMCHKKCPISVLKIA
GFVLTCGEERVEKKKWKDSPFSVKKELAEADLRNILEHRKNKNGQNVENEEEDSDEEDIY
GDIGNQVLSS
Nucleotide sequence
Length: 4,051
>KH2012:KH.C1.334.v1.R.ND1-1
GGTTACTGTATTCGAAAAATTAAGTAAAATTCCAACAAAGTTGAAATAACTTTTTATCTA
GTTTATTAGCCCAGATTATTTTTATCATTGCAAACATGAAGAAAGAACAGAAAGATTTTC
TTCTACATTGGGAGAATCTGTTTAAACAATTTCTTATTCCACAAAAATTTGCATCGGCAT
TTCCAGAGTGGGATATATGGGACAGATGGTCGAATGAAAATGAAGAAACTAAAGTTCAAA
TCTTTCTGGATAAACTTAGAGATTCAGAGGAATCTGGAATATTCAAAAGATTTATTGATA
ATCTGAGACACTGCAGTGAACAGAAGTGGATATTTGACTTAATTGATGGGAAACTGGATC
CTAAAGAGCAAATTAAATGCTTCAAACATGTGGTGGTAGCACCACAGTTAAAAACACTGT
TTAAGCTGCTTGAAAAAGATTATGAAATAGTAGATGCCAGAAGTATGATAGCTGAATTTA
CTGCGTATTTCACTACAGCTGAAAAGGATTGGCTTTTAGCAATTGATAGAGATCGTGGTA
ATGCCCCTGCAATGACTGCATTCTTTTCAATTATGACCCGCAAGCATCCTAAGTGGTTGA
AAGAATTTTATGATTCTCTCAATGAAAATAAATACCATCATCCAGATTCACCTACTCTTG
CTGAATCATTTCAGCAATACATTAAGTTAGAGGAAAAAAGAGATGGAGAAGCAAGCATTG
CTGTTACTGAAGATAATGATCAAACTGTCCCTGAGCCCATGGACCAAGCTTGTGCATTGC
CACCTGTTGAAGTAATACAAGAAGATAATGAAGAGTGTGGAACATCTTTTTTGTTGTGCA
TGGACCTACTGAACAATCTGAGCCCTTTTGAAGAAGACTGTAATTCAAATAATGATTCTT
TAAACAACTTCAATGTTATGGCTGTAGAAGAAGCAATGGAGACATGTACATCAGAAGATG
TATGTCAAGAAGAGTCGCTACCTGAGTTAAATTTAAGAGACTATCAGCTTGAATTGGCAG
AGCAAGCCATGTCTGGTGAAAACTCACTTATTGTTGCACCTACAGGTAGTGGAAAAACAT
TTGTTGCACTAAAGGTTTGTAAAGATCACATTGAAAAGAGACCCGACAGCAGGGTGGTGT
TTATGGTTCCAAGAGTTCCTCTTATCAAGCAGCAATATGAACTTTTCAAATGTTTTCTTG
GTGATGGTCAAGGGATCTTGAGAGCAATTTCAACAGATGAAACACTAAGTGCTCCAGCTG
ACCGTTTAATTCTAGATCATAAAATAAGTTTTCTGACGCCTCAGATTCTTGTTAACTTGC
TGAGGCAGGATCCCTCTTTTATCAATAAGCTTGGTTTGTTGATTTTTGATGAATGTCACC
ACACTGTCAAGGGCGATCCATACAACAGCATCATGAAAATATATCATGATAACTTGCTGA
AGAATAGAAGACTGGACATCCTACCACAAATTGTTGGTCTTACTGCATCTCCTGGTGTGG
GTTCTGCTAAAAGTGATGAAGCTGCAGCAAAAAACATCAAAACGTTGTTGGCCAATTTGA
ACGTTACAACTGCCCCTATTGAAGTGCAAAAGCACAAGAAAAACCTAAACCAGTACGAAA
ATGAAGCAAAATATGAGCTTAAGCCCATTAAGAGACAACAATCGGAGTTCAGAACAAAAA
TAAGGTTGGTAATGGACAAGATTGAGACAAAACTTAAGCTGGAATTTCGCAGGAATGATA
ACGCAACAAAAGGAATGAAGTTTGACCTAAAAGCAATGTCAGGAACCCAAGATTATGAGG
CTTGGGTTGTATCGTTTTATAAGAAGAGCACATTGCTAGTGGATCCGAACTTAAGCCAAC
GTTTCATGGCATATGCTCGCTACCTATGGAAATACAACAGTTCTTTGTGGATCAATGACC
ATGTACAGAGCAGGCATGCAAAAGAATATTTAGAAGAAGAACTTCCTCTTATACAGCCAA
GAACTCCCGTTGAGGCAGAATTGAAGAAACTTCATGATGAAATTGTGCCTGAAATAATGG
AAGAAAACAACCCGATGATTAATGCTTTATACAAAATTCTTAAAACTGAGTTCACCAAAC
AACCTGAATCGAAATGCATCATATTTGTTCGCACAAGACCCATTGCCAAAGCCCTCATAA
CTTGCATTGAAGAAAGTGAAGTGGAAAAACTTCATCTTAATCCAAAGCAACTCACAGGAG
CTGGTGCTGCAGTTGAACTAGGAGGCATGACAAAAGCCACACAAGAAGATACAATTGCTT
CATTTAGAGATGGCAGATGTAAAGTGATTGTAGCAACATCAGTAGCAGAGGAAGGATTAG
ACATCAAAGCTTGTAATCTGATCATCACTTATAATTACTCCACTAATGAAATAGGACAAG
TGCAAAGACAAGGTAGGGGAAGAGCCAAAGGAAGCAAGATGATCATTCTGGCATACGATG
ACAGTAGCCACATCCAACGAGAAAAAAGTAACATAATTCGTGTGAAGTTCACGCACGATA
TACTGCAGATGTTACGACAAATGGATCCAGAACAACTTAAGAAAGATATTAAAAAAATTC
AAATACGGTTAAAGGAAGACCGTGGTTTGGAAAAGTTGTCTGCTGAGTTTCAGAGTTTCA
AAAAACATCCTAGTGGGAACAACATTTGGACTCTCTTGTGTAAGGGATGTAAAACTGAAG
TCACAAAATCAGATCAGTTCCGACACATTGAAAAGCAGCACCATGTGGTTGTGGATCCTA
AGTTTGAAGATAAAGCATCTTGTCGTGAAGTACCTATAGAACAAGGGAAACCCGTGGGAT
TTGAACAAGTTATTATCGGAAAGGTTTACTGCAAAGAATGCGGGCATGACTGGGGTGTTC
GCATGTGCCACAAAAAATGTCCCATCTCTGTACTTAAAATCGCGGGCTTTGTGCTGACGT
GCGGAGAGGAGAGAGTGGAGAAGAAAAAATGGAAAGATTCGCCTTTTTCTGTTAAAAAAG
AGCTAGCAGAAGCAGATTTAAGAAATATTTTGGAACACAGAAAAAACAAAAATGGACAAA
ATGTAGAAAATGAGGAAGAAGACAGTGATGAAGAGGATATTTATGGTGACATTGGAAACC
AAGTGTTGAGTTCCTAAATTTAAACCTCAACTGTCACACATAACATTAATTTGATCTCTT
CAAATACAACACTAAAGATCAGATTAGTTCCAACCTCGAAGAAAATTAAATCTACTGTTC
CAAAAATTTTAATTTTGTAAATATTCTGATCATCAGATTTGTTAATATTTTTATTAGCTT
GTATGATTTTTCAACTTATCTGCATTGCGCTTATGTATTGTAGTTAATTTTTGTAAAGCT
CCCTACTTAGATTTTATTTTTCAAAGTATAATTGTTGTATTGTAGAACTTTGGTTAAGGA
ATTAAATAGCAGCGGTTTTACCGTTTGCACTCATTTACTTACTGTTTCAAACCCACTTTA
CTTTGGTGCAGTAACACAGTGGTTTATCCAATACTTCTAACCACTGTGCTACTGCACCAT
AGTGACTTAAAGTTTCCTAGCATACGTAATTTCAATGGCTATATGGAAATTTGTTAACTG
TGTGCCAGTAAGCGTATATGCGTTGGTTGGGTGTCTGTTTAAATTAAACCTTTTTTTGCG
TTAAATAAGTCATTTTTTAACAGCCATTGACTTTATAGTCATTGTTTCAATTCACTAATG
GATTGTCCAAGTTGCCACCCACAGAATAATTGGCTGGGTACCGAAATCCTTTTTTTTTTC
AAATAAGTGAAGAACTATTTTTATAGTGATTCTTCTAATGTGCATGGCTGTAAGTGTTCA
AATTTTCAAATGAAAAAAGCTATTTCCAGTTTATCACTTTTTAAAAAAAATTTTAGCTCT
ATTTTGCCTTTTTTTCCGCATGTTAGTAAGAATGTGGGTGTTTAACTTAATAATAAAGTT
GTAATTGTTGGGTTAACTCTTGTTGATATTACCAGCTTGTGGCCTCTTCTGTTTTTAATA
AAACGTCGTTACCCATAATAAGGAAATAAAT
| SMART |
Helicase_ATP-bd (IPR014001) - T[313-515] 4.7E-23 |
| Pfam |
Helicase/UvrB_N (IPR006935) - T[315-483] 2.4E-19 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[325-501] 21.958 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[327-486] 1.19E-39 - T[654-793] 1.19E-39 |
| SMART |
AAA+_ATPase (IPR003593) - T[330-477] 0.0017 |
| CDD |
Helicase_C (IPR001650) - T[659-802] 1.67027E-14 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[671-853] 15.752 |
| Pfam |
Helicase_C (IPR001650) - T[673-794] 2.0E-17 |
| SMART |
Helicase_C (IPR001650) - T[710-795] 4.5E-13 |
| ProSiteProfiles |
RLR_CTR (IPR021673) - T[863-993] 28.646 |
| Gene3D |
RLR_C_sf (IPR038557) - T[866-1003] 1.2E-29 |
| Pfam |
RLR_CTR (IPR021673) - T[876-985] 2.2E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DHX58_HUMAN | 31.069 % | 269 | 6.2E-78 |
| DDX58_HUMAN | 32.869 % | 308 | 3.42E-90 |
| IFIH1_HUMAN | 32.027 % | 303 | 2.34E-87 |