Aniseed - Transcript Card

Transcript 'KH2012:KH.C1.35.v1.A...'

Transcript Model

Transcript Id

KH2012:KH.C1.35.v1.A.SL2-1

Possible name(s)

RAB7A; RAB9A; RAB9B

Gene model

KH2012:KH.C1.35

Location

KhC1 [5,394,347 / 5,396,955]

Sequences

Amino acid sequence

Length: 208

>KH.C1.35.v1.A.SL2-1
FIMASRKKTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT
MQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTMPNTFKTLDSWRDEFLIQASPRDPENF
PFVVIGNKIDLENRVVSYKRAQGWCHSKNDIPYFECSAKDNINVEQAFQTVAKQALMQES
DAELFNEFPDRIDLKNNESKPKSGDCSC

Nucleotide sequence

Length: 1,509

>KH2012:KH.C1.35.v1.A.SL2-1
GATTTTTGTTTACAGAACCTTAGATTACTTAGCTTTTCCGTGACGCGCGTATTTAGGGTG
TAACTAACAGATCGAACAATTGTATTTTAGTGTTTACAGTTCTACTGTATTAAGTAAACA
TTTCTTCGTTCAGTTCTTTTTGCATTTGATTTATAATGGCGTCAAGGAAGAAGACTTTAT
TAAAAGTGATTATTCTTGGAGATAGCGGAGTTGGTAAGACATCTTTAATGAACCAATATG
TGAATAAAAAGTTCAGCAACCAATACAAAGCTACAATTGGTGCTGATTTTCTCACTAAAG
AAGTTATGGTTGATGACAGGCTAGTTACAATGCAGATTTGGGATACTGCTGGGCAAGAAA
GGTTTCAATCACTGGGCGTTGCTTTCTACCGAGGAGCTGACTGTTGTGTGCTTGTTTATG
ATGTCACAATGCCAAACACATTCAAAACCCTTGACAGTTGGAGAGATGAGTTTCTTATCC
AAGCCTCACCACGCGACCCTGAAAACTTTCCATTTGTAGTAATTGGAAACAAGATTGATC
TTGAAAATCGAGTGGTATCATACAAGAGAGCACAAGGTTGGTGTCACAGTAAGAACGATA
TCCCATACTTTGAATGCTCAGCGAAGGACAACATCAATGTGGAACAAGCATTTCAAACTG
TGGCCAAGCAAGCTTTAATGCAGGAATCTGACGCGGAACTCTTCAACGAATTTCCTGACC
GCATTGACCTTAAAAATAACGAAAGCAAACCAAAATCTGGAGATTGCTCATGCTAGGCTG
TGTTTACAGGTATCTCAAGTTTGACAGTGTTTTCCACCTCCGTGATATTTTCACAGTGTA
TTCTGGTTTCCAAACCATCTTCATATGTTGTTTGACTTCTTCTGATAAGCAAGTTTAAGC
TTACAGGTTTAATACTAATTGGTCCTTACTCTTTAGTAATGAAAGATACAGAGTGTGGTT
CTTCTCCTTTCAGCCTGAAATTAATTTCTAATCTTCTTAAATTCTCCACCACGGGAAGTC
CACTGATCTTGTTCCTAATCTGTTAAACTAATTATATTCGTTGTATGATATTGCTTCATG
TATGTTACTTTTATCTTGTGAAGCAAATTCTGATTCTTGATTAAAATTTCACCAATAGCC
CAATGCATCTATGCCTGGATTTACTTTTTTTTCAGACAAATTAAAAAAAAAACTCTTAGA
CTGCGTTATGTGTTTTTGTTCCATGTGTTTTGTGTGCAATAATTGTACATAAACCATCAC
CAATTTCATCACCATCGTTGTTTGTTGTTATTCCTGCAAAGCATCTCACACTGATATTTT
CAATTTCCATGGTGACCTTACATGTTTGTACCACAGCTACAGTGGCATGTAGCAAAACAT
TTAGTTTAAATTAACTTGTACTCAATTTAACAAGTGTTTTGGTAAAAAAAATAATACTTA
CTAAACTGGTATATATATGTTTGCTACAATTTCTGCGATCAGAATAAATATTTTGAAAGA
AAAATTTTA

InterProScan

SUPERFAMILY	P-loop_NTPase (IPR027417) - T[7-180] 6.04E-56
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[11-172] 8.3E-27
Pfam	Small_GTPase (IPR001806) - T[12-175] 1.4E-58

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAB9A_HUMAN	49.01 %	206	5.39E-68
RAB9B_HUMAN	51.98 %	206	5.33E-68
RAB7A_HUMAN	83.575 %	363	6.42E-130