- Transcript 'KH2012:KH.C1.363.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.363.v1.A.nonSL2-1
Possible name(s)
DDX39B
Gene model
Location
KhC1 [4,726,433 / 4,730,457]
Amino acid sequence
Length: 431
>KH.C1.363.v1.A.nonSL2-1
IRKYTTNMTEAEELLDYDEEEHETTQEISTDKKDAKKDVKGTYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSV
LVMCHTRELAFQISKEYERFSKYMPTIKVAVFFGGLPITKDQTTLKNNCPHIVVGTPGRL
LALIRSKSLTLKNVKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQVMMFSATLSKDIR
PVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDLLDALEFNQVVIFVKS
VQRCMALAQLLKEQNFPAIDIHRAMNQEERLSRYQLFKNFERRILVATNLFGRGMDIERV
NIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVTELPD
EIDISAYIEGR
Nucleotide sequence
Length: 1,807
>KH2012:KH.C1.363.v1.A.nonSL2-1
CATTTCTAACAGTTTGAATCTGTGGGTGGACGTCGTTTTTTATCTAGCTGAATCCGAAAA
TATACTACAAACATGACTGAAGCAGAAGAATTACTTGACTACGACGAAGAAGAACATGAA
ACTACTCAAGAAATCTCAACAGATAAAAAAGATGCAAAAAAAGATGTCAAGGGAACATAC
GTCTCAATACATAGCTCTGGTTTTAGAGATTTTCTTTTGAAACCAGAGTTATTGAGAGCT
ATTGTTGACTGCGGTTTTGAGCATCCTTCAGAAGTTCAAAATGAATGCATTCCGCAAGCT
GTACTTGGTATGGATGTGCTCTGTCAAGCTAAATCTGGTATGGGGAAAACTGCAGTGTTT
GTGCTCGCCACATTACAACAACTTGAACCTGTGGATGGCCAGGTATCTGTGTTGGTAATG
TGCCATACTCGAGAACTGGCCTTCCAAATCAGTAAAGAATACGAACGTTTCTCCAAGTAC
ATGCCCACCATTAAGGTGGCTGTGTTTTTCGGTGGCTTGCCAATCACCAAAGATCAAACA
ACGTTGAAGAACAACTGCCCTCATATTGTTGTTGGTACACCTGGTCGTCTCTTGGCACTC
ATTCGCTCAAAATCACTCACCTTAAAAAATGTCAAACATTTTATTCTTGACGAGTGTGAT
AAAATGTTGGAACAATTAGATATGCGACGTGATGTTCAAGATATCTTCCGTCTTACTCCC
CATGAGAAGCAAGTGATGATGTTTAGTGCCACGCTCAGCAAAGATATCCGACCAGTGTGC
AAGAAGTTCATGCAAGATCCAATGGAAGTTTATGTTGATGATGAAGCAAAGCTCACCTTG
CATGGTCTTCAACAACATTATGTCAAGTTGAAAGACAATGAAAAGAATAGAAAGTTGTTT
GACCTCCTTGATGCATTGGAGTTTAATCAGGTGGTGATATTTGTGAAGTCAGTGCAGAGG
TGCATGGCTTTGGCTCAATTATTAAAAGAACAAAACTTTCCTGCGATTGATATACATCGT
GCAATGAACCAAGAAGAAAGACTCAGTAGATACCAACTGTTTAAGAACTTTGAACGACGT
ATTCTTGTTGCTACAAACCTATTTGGGCGAGGTATGGATATTGAAAGAGTGAACATCGTT
TTCAACTATGACATGCCAGAGGATTCTGATACTTACCTGCACAGAGTTGCAAGAGCTGGT
AGATTTGGTACAAAAGGTCTCGCCATCACTTTTGTCTCCGATGAAACGGATGCGAAAACA
TTAAACGATGTTCAAGATCGTTTCGAGGTCAATGTCACCGAACTTCCTGATGAAATCGAT
ATTTCCGCCTACATTGAGGGGAGATAAACATTTCATTCTTTACACTTTTGTTATCCAATG
CTGGCTTTGTCACCGAAGAACTACAAATGAAACTTTGTTTTTATGTAAATTTCTAAACTG
TTGTTTTAGATCTGTAGTCGGTATCGGGAAATTTGTAGTCAGCTGTATTTTTACAGTCGT
TCTCATTCATATGATAATTTTGAAAATAAAACTATGTATCATTTATTCTGTTTTTTCTTT
AATTGGTTATGCAAAGGCAACAAAACTCCTGGGCGGTTTGTTAACGAAAATGGTCTCCGC
ATTTTAATAAAACCGTTGATACACTATTATTCCACTTTTGGGAATGAATTATAATCTTTG
TATTTTTAACTGAACGTTCGGCCAAATAATGTCGGATTATTTTCCATGTACCAATAATTT
GACATGGTTTCGAGAACGCAGCACGTCACTTATAAATACCACTGTAATAAAACTTATTGA
AACGGCA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[49-77] 9.45 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[68-269] 1.3E-52 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[74-239] 1.5E-38 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[80-253] 27.265 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[118-400] 5.57E-64 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[265-426] 21.354 |
| CDD |
Helicase_C (IPR001650) - T[268-394] 3.52874E-36 |
| Pfam |
Helicase_C (IPR001650) - T[278-386] 2.6E-23 |
| SMART |
Helicase_C (IPR001650) - T[305-386] 8.3E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IF4A3_HUMAN | 36.438 % | 250 | 2.93E-79 |
| DX39B_HUMAN | 86.811 % | 758 | 0 |
| DX39A_HUMAN | 86.091 % | 748 | 0 |