- Clone 'ciht018b04' >
- Clone 'citb083e03' >
- Transcript 'KH2012:KH.C2.36.v4.A...' >
- Transcript 'KH2012:KH.C2.36.v4.A...' >
- Transcript 'KH2012:KH.C1.38.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.38.v1.A.ND1-1
Possible name(s)
HOXA3; HOXB3; HOXD3
Gene model
Location
KhC1 [9,897,692 / 9,914,878]
Amino acid sequence
Length: 749
>KH.C1.38.v1.A.ND1-1
RHRLIDKVHYQQTIRAMKNGQEKAPAATKYSVAASNTQNSGDYFGKKRAGNNIEDLGSYY
MGVEGHNTTNAAIENYQHTESAKGRNQSNGTSSSRIDQPGYTEQSTHTIASQRVYNLDYE
VERIDGGDVIDENSTSVTSQECRGFGIYSGCDSVSEAINANNSNNRSSCGEKENGVVIPA
AIFHDNDLQKQSQESIGSHKSQQGEELARISTSELLASSVVDAKSDLYSPLSPNSGAVLM
SPRGRTLIQTPGSEGSPGPEMSKSPASELQIAADPRLSVRGYETGQAAQSGAVLDATITD
SGANQQCSKVRSGAEDSMDLDINSKQTGIRENGGATTNPKHQQNKDPGIFDWMLESRKNQ
KKKHSSSESNSSSGDGDKCYSASKRERTAYTNSQLVELEKEFHFSHYLCRPRRIELAQGL
GLTERQIKIWFQNRRMKFKKEQKQKAVLQRNNGDSVMGAHGHQHHYPPNPYLRAQPILYQ
EEMNGKCIQNNYMGPEVNGGHFTNGVEAIPDHNMCDMSNTVSPTHQLQAFVTSSTMAARQ
AAPMHRHAVNSQITRSPSSGASNASSPQNIKSIFQQDQTSTSSVVTSPMNDQRRHNDVTG
YYQPHRTSDHSNFFEKQTERNRDDKRDDDAIYRSAARQNNHSQANGLRYHQHRPITSFSD
YVHGGRGQEIGEIPPLNPFTHASQRNLPHQFLPLYYGSTPEYISSCSAMGVTGTEKSPAT
PLDYSRSAYPTHGEKTILPHGHFQRLTHL
Nucleotide sequence
Length: 2,714
>KH2012:KH.C1.38.v1.A.ND1-1
GATTTATGAACCGTCCAGGTAACCGAACACTTGGAAGTGGACAAGCTGACAACTTTGGAC
TGAAGGGCGTCCAGTTTGGATTTGGAACCTAATCTCGGAGATCAATCAACAGTCTTCTTG
GGTTTAAAGGAATTATAAAAAAACAAAAAAAAAATTGGATTTACGTGAAGATACGTTTCA
CCGTAACGTCACAGATTGATCGACAAAGTGCATTATCAGCAAACAATCCGAGCAATGAAG
AATGGGCAAGAGAAAGCACCAGCTGCGACCAAATATAGCGTCGCCGCGTCGAACACCCAG
AATAGTGGAGATTACTTTGGTAAGAAGCGAGCGGGCAATAATATAGAAGATCTTGGAAGT
TATTACATGGGGGTTGAAGGACATAACACGACGAATGCAGCAATTGAGAATTATCAACAT
ACAGAATCAGCGAAAGGACGAAATCAGTCGAACGGAACGAGCTCGTCGCGAATCGACCAA
CCAGGCTACACCGAACAATCAACTCATACTATTGCGTCACAGAGAGTTTACAACCTAGAC
TACGAGGTGGAAAGAATCGATGGTGGTGACGTCATAGATGAAAACAGTACGTCAGTGACA
TCACAAGAATGTCGAGGTTTTGGAATTTACTCAGGCTGCGATTCTGTTAGCGAAGCAATC
AACGCGAATAACAGTAATAACCGAAGTTCGTGTGGAGAGAAAGAAAATGGAGTCGTGATA
CCCGCGGCGATATTTCATGATAACGACCTTCAAAAACAGAGCCAAGAATCTATCGGCAGC
CATAAGAGTCAACAAGGCGAGGAACTAGCAAGAATATCGACGTCGGAGTTACTTGCAAGC
TCTGTCGTTGATGCTAAATCTGATCTTTATTCACCACTCTCTCCTAACTCGGGTGCTGTG
TTAATGTCGCCCAGGGGAAGGACACTAATTCAAACGCCGGGTAGCGAAGGGTCGCCCGGC
CCTGAAATGAGCAAGTCGCCGGCATCGGAGCTTCAAATTGCCGCCGATCCTAGGCTTTCG
GTCCGAGGTTACGAAACCGGACAAGCTGCACAGAGTGGTGCTGTATTGGATGCAACAATT
ACAGATAGTGGAGCTAACCAACAGTGTTCTAAAGTTAGATCAGGAGCAGAAGACAGCATG
GACCTTGATATAAATAGCAAGCAAACGGGAATACGAGAAAATGGCGGCGCTACAACAAAC
CCTAAACACCAGCAGAACAAAGATCCTGGCATCTTTGACTGGATGTTAGAATCAAGGAAA
AATCAAAAGAAGAAACATTCAAGTTCTGAAAGCAACTCATCGTCAGGGGACGGAGACAAA
TGCTATTCAGCTAGCAAACGCGAAAGAACGGCATACACAAACTCACAATTGGTGGAACTG
GAAAAGGAATTTCACTTCAGCCACTACCTATGCAGACCACGAAGAATCGAACTCGCACAG
GGGCTTGGTTTAACAGAGAGGCAAATAAAGATTTGGTTTCAAAATCGTCGAATGAAGTTT
AAGAAGGAGCAAAAGCAGAAAGCGGTTCTACAGAGGAATAATGGGGATTCGGTTATGGGG
GCACATGGTCACCAACACCATTACCCACCTAATCCTTACTTGAGAGCACAACCTATTCTA
TACCAAGAAGAAATGAATGGGAAATGCATCCAGAATAATTACATGGGACCAGAAGTTAAT
GGTGGGCACTTTACAAATGGAGTTGAAGCCATACCTGATCACAATATGTGTGATATGTCT
AATACAGTGTCACCGACCCACCAGCTACAAGCGTTTGTGACGTCATCAACAATGGCCGCG
CGACAAGCAGCTCCTATGCACCGCCATGCGGTCAACTCGCAAATCACTCGATCGCCATCT
AGCGGCGCCAGCAACGCGTCATCACCACAAAACATAAAATCAATCTTCCAACAAGATCAA
ACCTCTACGTCATCGGTCGTGACGTCCCCAATGAACGATCAACGACGTCACAATGACGTC
ACGGGGTACTACCAACCTCACAGAACGAGCGATCACTCGAATTTCTTCGAAAAACAAACG
GAAAGAAACCGCGACGATAAACGCGATGATGACGCAATATACAGATCGGCAGCGAGACAA
AACAACCACTCACAAGCAAACGGGTTACGATACCATCAACATCGTCCTATTACGTCATTC
AGTGATTACGTACATGGGGGTCGGGGTCAAGAAATCGGGGAAATCCCCCCGCTTAATCCA
TTCACCCATGCCAGCCAGCGAAACCTGCCTCACCAGTTCCTACCATTATACTACGGTTCC
ACACCCGAATATATATCCTCATGCTCTGCTATGGGTGTCACAGGGACCGAAAAATCACCT
GCGACCCCTCTCGATTATTCAAGGTCTGCCTACCCAACACACGGGGAAAAGACGATCTTA
CCGCATGGCCACTTCCAACGTCTTACACACTTATAAGACCCCACCCTGCCTTTCGTATTA
AAAGTTCCATTGTATCGCCAGTGTTCTTGCGCGCTTGCTTACGTCATAACCGCTATTAAT
GTGTAACAATCAACAAGTGTTAAATATAAACTTAATGCAGCTCACCGCAAATTTCATCCG
TGCAGCGCCGAATATTCTTGATCGAGAAATACTGAACTTCTTTCCTGTCCAATGCAATAG
GAATTGAACGATTGTTAAACAGTATTTAACGAGTTAAAGAATCATCAGTGTTTTAAATAA
ATTTGATTCCAAAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[368-443] 8.98E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[381-441] 21.475 |
| SMART |
Homeobox_dom (IPR001356) - T[383-445] 5.7E-27 |
| CDD |
Homeobox_dom (IPR001356) - T[384-442] 9.74025E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[384-440] 2.2E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[405-416] 2.3E-6 - T[420-430] 2.3E-6 - T[430-439] 2.3E-6 |
| PRINTS |
HTH_motif (IPR000047) - T[412-421] 2.7E-6 - T[421-437] 2.7E-6 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[416-439] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD3_HUMAN | 44.974 % | 145 | 2.14E-37 |
| HXA3_HUMAN | 63.636 % | 139 | 1.73E-35 |
| HXB3_HUMAN | 46.479 % | 128 | 8.49E-32 |