- Transcript 'KH2012:KH.C4.547.v1....' >
- Molecular Tool 'Neurog b line>Su(H)DBM' >
- Transcript 'KH2012:KH.C1.38.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C1.38.v2.A.SL2-1
Possible name(s)
HOXA3; HOXB3; HOXD3
Gene model
Location
KhC1 [9,897,692 / 9,907,805]
Amino acid sequence
Length: 749
>KH.C1.38.v2.A.SL2-1
RHRLIDKVHYQQTIRAMKNGQEKAPAATKYSVAASNTQNSGDYFGKKRAGNNIEDLGSYY
MGVEGHNTTNAAIENYQHTESAKGRNQSNGTSSSRIDQPGYTEQSTHTIASQRVYNLDYE
VERIDGGDVIDENSTSVTSQECRGFGIYSGCDSVSEAINANNSNNRSSCGEKENGVVIPA
AIFHDNDLQKQSQESIGSHKSQQGEELARISTSELLASSVVDAKSDLYSPLSPNSGAVLM
SPRGRTLIQTPGSEGSPGPEMSKSPASELQIAADPRLSVRGYETGQAAQSGAVLDATITD
SGANQQCSKVRSGAEDSMDLDINSKQTGIRENGGATTNPKHQQNKDPGIFDWMLESRKNQ
KKKHSSSESNSSSGDGDKCYSASKRERTAYTNSQLVELEKEFHFSHYLCRPRRIELAQGL
GLTERQIKIWFQNRRMKFKKEQKQKAVLQRNNGDSVMGAHGHQHHYPPNPYLRAQPILYQ
EEMNGKCIQNNYMGPEVNGGHFTNGVEAIPDHNMCDMSNTVSPTHQLQAFVTSSTMAARQ
AAPMHRHAVNSQITRSPSSGASNASSPQNIKSIFQQDQTSTSSVVTSPMNDQRRHNDVTG
YYQPHRTSDHSNFFEKQTERNRDDKRDDDAIYRSAARQNNHSQANGLRYHQHRPITSFSD
YVHGGRGQEIGEIPPLNPFTHASQRNLPHQFLPLYYGSTPEYISSCSAMGVTGTEKSPAT
PLDYSRSAYPTHGEKTILPHGHFQRLTHL
Nucleotide sequence
Length: 2,792
>KH2012:KH.C1.38.v2.A.SL2-1
TATTACGTAACAAGACATTTTATGACGTATTAGATCAGTAATAAGTGTTAAGTAAAATTG
GAAATCGCTATGTTACGTCACAGTGGATTTTATCACCGAACACGAAGAAAAGTAAGACCG
ATCAAGTTTGAATAAATATCATGGGCGTCCAGTTTGGATTTGGAACCTAATCTCGGAGAT
CAATCAACAGTCTTCTTGGGTTTAAAGGAATTATAAAAAAACAAAAAAAAAATTGGATTT
ACGTGAAGATACGTTTCACCGTAACGTCACAGATTGATCGACAAAGTGCATTATCAGCAA
ACAATCCGAGCAATGAAGAATGGGCAAGAGAAAGCACCAGCTGCGACCAAATATAGCGTC
GCCGCGTCGAACACCCAGAATAGTGGAGATTACTTTGGTAAGAAGCGAGCGGGCAATAAT
ATAGAAGATCTTGGAAGTTATTACATGGGGGTTGAAGGACATAACACGACGAATGCAGCA
ATTGAGAATTATCAACATACAGAATCAGCGAAAGGACGAAATCAGTCGAACGGAACGAGC
TCGTCGCGAATCGACCAACCAGGCTACACCGAACAATCAACTCATACTATTGCGTCACAG
AGAGTTTACAACCTAGACTACGAGGTGGAAAGAATCGATGGTGGTGACGTCATAGATGAA
AACAGTACGTCAGTGACATCACAAGAATGTCGAGGTTTTGGAATTTACTCAGGCTGCGAT
TCTGTTAGCGAAGCAATCAACGCGAATAACAGTAATAACCGAAGTTCGTGTGGAGAGAAA
GAAAATGGAGTCGTGATACCCGCGGCGATATTTCATGATAACGACCTTCAAAAACAGAGC
CAAGAATCTATCGGCAGCCATAAGAGTCAACAAGGCGAGGAACTAGCAAGAATATCGACG
TCGGAGTTACTTGCAAGCTCTGTCGTTGATGCTAAATCTGATCTTTATTCACCACTCTCT
CCTAACTCGGGTGCTGTGTTAATGTCGCCCAGGGGAAGGACACTAATTCAAACGCCGGGT
AGCGAAGGGTCGCCCGGCCCTGAAATGAGCAAGTCGCCGGCATCGGAGCTTCAAATTGCC
GCCGATCCTAGGCTTTCGGTCCGAGGTTACGAAACCGGACAAGCTGCACAGAGTGGTGCT
GTATTGGATGCAACAATTACAGATAGTGGAGCTAACCAACAGTGTTCTAAAGTTAGATCA
GGAGCAGAAGACAGCATGGACCTTGATATAAATAGCAAGCAAACGGGAATACGAGAAAAT
GGCGGCGCTACAACAAACCCTAAACACCAGCAGAACAAAGATCCTGGCATCTTTGACTGG
ATGTTAGAATCAAGGAAAAATCAAAAGAAGAAACATTCAAGTTCTGAAAGCAACTCATCG
TCAGGGGACGGAGACAAATGCTATTCAGCTAGCAAACGCGAAAGAACGGCATACACAAAC
TCACAATTGGTGGAACTGGAAAAGGAATTTCACTTCAGCCACTACCTATGCAGACCACGA
AGAATCGAACTCGCACAGGGGCTTGGTTTAACAGAGAGGCAAATAAAGATTTGGTTTCAA
AATCGTCGAATGAAGTTTAAGAAGGAGCAAAAGCAGAAAGCGGTTCTACAGAGGAATAAT
GGGGATTCGGTTATGGGGGCACATGGTCACCAACACCATTACCCACCTAATCCTTACTTG
AGAGCACAACCTATTCTATACCAAGAAGAAATGAATGGGAAATGCATCCAGAATAATTAC
ATGGGACCAGAAGTTAATGGTGGGCACTTTACAAATGGAGTTGAAGCCATACCTGATCAC
AATATGTGTGATATGTCTAATACAGTGTCACCGACCCACCAGCTACAAGCGTTTGTGACG
TCATCAACAATGGCCGCGCGACAAGCAGCTCCTATGCACCGCCATGCGGTCAACTCGCAA
ATCACTCGATCGCCATCTAGCGGCGCCAGCAACGCGTCATCACCACAAAACATAAAATCA
ATCTTCCAACAAGATCAAACCTCTACGTCATCGGTCGTGACGTCCCCAATGAACGATCAA
CGACGTCACAATGACGTCACGGGGTACTACCAACCTCACAGAACGAGCGATCACTCGAAT
TTCTTCGAAAAACAAACGGAAAGAAACCGCGACGATAAACGCGATGATGACGCAATATAC
AGATCGGCAGCGAGACAAAACAACCACTCACAAGCAAACGGGTTACGATACCATCAACAT
CGTCCTATTACGTCATTCAGTGATTACGTACATGGGGGTCGGGGTCAAGAAATCGGGGAA
ATCCCCCCGCTTAATCCATTCACCCATGCCAGCCAGCGAAACCTGCCTCACCAGTTCCTA
CCATTATACTACGGTTCCACACCCGAATATATATCCTCATGCTCTGCTATGGGTGTCACA
GGGACCGAAAAATCACCTGCGACCCCTCTCGATTATTCAAGGTCTGCCTACCCAACACAC
GGGGAAAAGACGATCTTACCGCATGGCCACTTCCAACGTCTTACACACTTATAAGACCCC
ACCCTGCCTTTCGTATTAAAAGTTCCATTGTATCGCCAGTGTTCTTGCGCGCTTGCTTAC
GTCATAACCGCTATTAATGTGTAACAATCAACAAGTGTTAAATATAAACTTAATGCAGCT
CACCGCAAATTTCATCCGTGCAGCGCCGAATATTCTTGATCGAGAAATACTGAACTTCTT
TCCTGTCCAATGCAATAGGAATTGAACGATTGTTAAACAGTATTTAACGAGTTAAAGAAT
CATCAGTGTTTTAAATAAATTTGATTCCAAAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[368-443] 8.98E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[381-441] 21.475 |
| SMART |
Homeobox_dom (IPR001356) - T[383-445] 5.7E-27 |
| CDD |
Homeobox_dom (IPR001356) - T[384-442] 9.74025E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[384-440] 2.2E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[405-416] 2.3E-6 - T[420-430] 2.3E-6 - T[430-439] 2.3E-6 |
| PRINTS |
HTH_motif (IPR000047) - T[412-421] 2.7E-6 - T[421-437] 2.7E-6 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[416-439] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD3_HUMAN | 44.974 % | 145 | 2.14E-37 |
| HXA3_HUMAN | 63.636 % | 139 | 1.73E-35 |
| HXB3_HUMAN | 46.479 % | 128 | 8.49E-32 |