Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C1.398.v2.A.SL2-1

Possible name(s)

TCEA1; TCEA2; TCEA3

Gene model

KH2012:KH.C1.398

Location

KhC1 [5,332,470 / 5,334,640]

Sequences

Amino acid sequence

Length: 273

>KH.C1.398.v2.A.SL2-1
DNALDVLKALKQIPINLDTLQKTRIGMSVNNIRKQTANDEVAIAAKQLIKGWKKLVSEPS
SASKKSEDNKKKEKPEPIISTNIRKTSTTKMEVSASSHTMDTSSLQSTGNSVRDKCREML
VRGLQTDNTSGHSDQQCAFLAAAIEEAIYSEFKDTGVKYKNRIRSRFSNLKDTRNSILRL
NVLNGILKPEQIAKMTAEEMASDEMKKKREEYEQQNIKDHQMSVNEGTKTDMFVCGRCKG
RACTYNQLQTRSADEPMTTFVFCTECGNRWKFC

Nucleotide sequence

Length: 1,076

>KH2012:KH.C1.398.v2.A.SL2-1
GATAATGCCTTGGATGTCTTGAAGGCTCTGAAACAAATTCCAATAAACTTAGACACACTG
CAGAAAACTCGTATTGGTATGTCAGTTAATAATATAAGAAAACAAACTGCAAACGATGAG
GTTGCAATAGCAGCAAAACAACTTATAAAGGGTTGGAAGAAGTTGGTTTCAGAACCCAGT
TCAGCGTCAAAGAAATCTGAAGATAATAAAAAAAAGGAAAAACCCGAACCAATAATATCA
ACCAATATCCGAAAGACAAGCACAACAAAAATGGAAGTTTCTGCTTCATCTCACACAATG
GACACCTCATCACTTCAATCCACAGGAAATTCCGTTCGAGATAAATGTCGTGAAATGTTG
GTACGAGGATTGCAAACAGATAATACATCGGGCCACAGTGACCAACAATGTGCATTTCTT
GCTGCTGCTATTGAAGAAGCTATCTACTCTGAATTTAAAGATACAGGAGTGAAATACAAG
AACAGAATACGAAGCAGATTTAGTAACTTAAAAGACACCAGAAACTCCATCCTTCGACTG
AATGTTCTCAACGGTATTCTTAAGCCAGAACAAATCGCCAAAATGACCGCTGAGGAGATG
GCGAGTGACGAAATGAAAAAGAAAAGAGAGGAATACGAGCAACAGAACATCAAAGATCAT
CAGATGTCTGTCAACGAAGGAACGAAGACTGACATGTTCGTATGCGGTCGATGCAAAGGA
CGGGCATGCACATACAATCAGCTGCAAACGAGAAGTGCTGACGAGCCCATGACAACTTTC
GTCTTCTGTACTGAATGTGGAAACAGATGGAAATTCTGTTAAGACTTTATCCTACTGTTA
TACTTTTTGTTTTTTTTTCTTATCGGCCATGAACCCACGGCAAAATGGTGACGATCTTGC
TCACTTGTCCCAGTCGACTTACCAGACATTTTAATTAGCGTTATTTATGAATGCCACTAA
ATTTGGATCTCTTTGGTTTTACGAAGCACCTGGTGCCATAACTTTACTTGGAAATAAAAT
AGAATGTGCGGTTTGTTTGGCATCGAAATCCTGCGACATCATAAAACAATTTAAAC

InterProScan

Gene3D	TFIIS/LEDGF_dom_sf (IPR035441) - T[1-73] 1.2E-20
PIRSF	TF_IIS-typ (IPR035100) - T[1-273] 7.0E-92
ProSiteProfiles	TFIIS_N (IPR017923) - T[1-59] 21.999
SUPERFAMILY	TFIIS/LEDGF_dom_sf (IPR035441) - T[2-71] 4.71E-19
SMART	TFIIS/CRSP70_N_sub (IPR003617) - T[2-58] 3.8E-9
TIGRFAM	TFSII (IPR006289) - T[3-273] 2.0E-87
Pfam	TFIIS_N (IPR017923) - T[5-56] 1.8E-12
Gene3D	TFIIS_cen_dom_sf (IPR036575) - T[97-202] 4.0E-35
SUPERFAMILY	TFIIS_cen_dom_sf (IPR036575) - T[97-204] 8.24E-32
Pfam	TFIIS_cen_dom (IPR003618) - T[110-220] 1.1E-37
SMART	TFIIS_cen_dom (IPR003618) - T[110-211] 8.6E-36
ProSiteProfiles	TFIIS_cen_dom (IPR003618) - T[112-228] 39.471
ProSiteProfiles	Znf_TFIIS (IPR001222) - T[231-271] 13.64
SMART	Znf_TFIIS (IPR001222) - T[233-272] 7.2E-19
Pfam	Znf_TFIIS (IPR001222) - T[234-271] 2.4E-17
ProSitePatterns	Znf_TFIIS (IPR001222) - T[235-270] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TCEA2_HUMAN	47.67 %	261	3.29E-87
TCEA1_HUMAN	53.684 %	271	3.24E-91
TCEA3_HUMAN	42.154 %	236	9.94E-77