Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C14.115.v1.A.nonSL3-1

Possible name(s)

SRSF12; SRSF3; SRSF7

Gene model

KH2012:KH.C14.115

Location

KhC14 [2,962,761 / 2,963,982]

Sequences

Amino acid sequence

Length: 156

>KH.C14.115.v1.A.nonSL3-1
FLPVRRFVKMSSRSFRASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFA
YVLFEDARDAKDAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNR
GFRSDMRCYNCSETGHFARDCPRSRGLIFMSPSVHY

Nucleotide sequence

Length: 759

>KH2012:KH.C14.115.v1.A.nonSL3-1
AGATTTAGTTTTTACCAGTACGCAGATTTGTTAAAATGTCGTCGAGGTCATTTCGTGCGA
GCTCCGATCGAAAAGTTTACGTTGGCAATCTTGGAACGCACGCATCAAGAGAGGATCTTG
AAGAAGAATTCAGCTACTACGGAAGATTGGACAGCGTTTGGGTCGCAAGAAACCCTCCAG
GTTTTGCGTATGTTCTTTTCGAAGATGCCCGAGATGCAAAAGATGCCGTTCGTGGATTAG
ATGGAAAAATAATTTGCGATCGAAAAGTAAGAGTTGACATTTCAAACTCCCGAAGTACCG
GTCGGCCTGCACGACGTGGTCCTGCTCCATATGATAGATATGGAGGAGGAGGTGGTGGTG
GAAACCGAGGGTTTCGAAGCGATATGAGATGTTACAACTGCAGCGAGACCGGTCACTTTG
CACGTGATTGCCCAAGGTCTAGAGGGCTGATTTTCATGTCACCGAGTGTACATTATTGAT
ACGAGGCCCATGTACGTGGTGCACAGTGGCTCAGAGCGCCTAATGAACGATAGAGGGCAT
GAACGATATGTGATCGTGGTGCAGTGTGCGTTTTTGTTCGGTGCGAGTGATCGCAGAATG
AATGACCCGAGATCGGCTGAACTATTACAGCGCGCTTCTCAACGATTAGGAATTTAGTGG
TGGCTTTTCAGTGTTTGGCAAGTAATAACCTATTTACGTCAATTCGTCATCACATGCAAT
GCACCAAAGGCCACTTTTTCTTCAAGTTAAATTTTTCTA

InterProScan

SUPERFAMILY	RBD_domain_sf (IPR035979) - T[9-123] 1.76E-28
Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[15-94] 6.7E-23
ProSiteProfiles	RRM_dom (IPR000504) - T[21-94] 17.131
SMART	RRM_dom (IPR000504) - T[22-90] 4.3E-20
Pfam	RRM_dom (IPR000504) - T[23-88] 2.5E-15
SUPERFAMILY	Znf_CCHC_sf (IPR036875) - T[119-147] 1.44E-7
SMART	Znf_CCHC (IPR001878) - T[127-143] 4.4E-5
ProSiteProfiles	Znf_CCHC (IPR001878) - T[127-143] 11.07
Pfam	Znf_CCHC (IPR001878) - T[127-142] 3.1E-8

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SRSF3_HUMAN	60.227 %	104	2.67E-29
SRSF7_HUMAN	54.615 %	126	5.96E-37