Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C14.115.v1.A.nonSL5-1

Possible name(s)

SRSF12; SRSF3; SRSF7

Gene model

KH2012:KH.C14.115

Location

KhC14 [2,962,780 / 2,963,982]

Sequences

Amino acid sequence

Length: 152

>KH.C14.115.v1.A.nonSL5-1
RRFVKMSSRSFRASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLF
EDARDAKDAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNRGFRS
DMRCYNCSETGHFARDCPRSRGLIFMSPSVHY

Nucleotide sequence

Length: 740

>KH2012:KH.C14.115.v1.A.nonSL5-1
ACGCAGATTTGTTAAAATGTCGTCGAGGTCATTTCGTGCGAGCTCCGATCGAAAAGTTTA
CGTTGGCAATCTTGGAACGCACGCATCAAGAGAGGATCTTGAAGAAGAATTCAGCTACTA
CGGAAGATTGGACAGCGTTTGGGTCGCAAGAAACCCTCCAGGTTTTGCGTATGTTCTTTT
CGAAGATGCCCGAGATGCAAAAGATGCCGTTCGTGGATTAGATGGAAAAATAATTTGCGA
TCGAAAAGTAAGAGTTGACATTTCAAACTCCCGAAGTACCGGTCGGCCTGCACGACGTGG
TCCTGCTCCATATGATAGATATGGAGGAGGAGGTGGTGGTGGAAACCGAGGGTTTCGAAG
CGATATGAGATGTTACAACTGCAGCGAGACCGGTCACTTTGCACGTGATTGCCCAAGGTC
TAGAGGGCTGATTTTCATGTCACCGAGTGTACATTATTGATACGAGGCCCATGTACGTGG
TGCACAGTGGCTCAGAGCGCCTAATGAACGATAGAGGGCATGAACGATATGTGATCGTGG
TGCAGTGTGCGTTTTTGTTCGGTGCGAGTGATCGCAGAATGAATGACCCGAGATCGGCTG
AACTATTACAGCGCGCTTCTCAACGATTAGGAATTTAGTGGTGGCTTTTCAGTGTTTGGC
AAGTAATAACCTATTTACGTCAATTCGTCATCACATGCAATGCACCAAAGGCCACTTTTT
CTTCAAGTTAAATTTTTCTA

InterProScan

SUPERFAMILY	RBD_domain_sf (IPR035979) - T[9-119] 2.99E-28
Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[11-90] 6.3E-23
ProSiteProfiles	RRM_dom (IPR000504) - T[17-90] 17.131
SMART	RRM_dom (IPR000504) - T[18-86] 4.3E-20
Pfam	RRM_dom (IPR000504) - T[19-84] 2.3E-15
SUPERFAMILY	Znf_CCHC_sf (IPR036875) - T[115-143] 1.38E-7
ProSiteProfiles	Znf_CCHC (IPR001878) - T[123-139] 11.07
Pfam	Znf_CCHC (IPR001878) - T[123-138] 3.0E-8
SMART	Znf_CCHC (IPR001878) - T[123-139] 4.4E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SRSF3_HUMAN	60.227 %	105	1.88E-29
SRSF7_HUMAN	54.615 %	127	3.11E-37