- Transcript 'KH2012:KH.C14.115.v2...'
Transcript Model
Transcript Id
KH2012:KH.C14.115.v2.A.nonSL5-3
Possible name(s)
SRSF12; SRSF3; SRSF7
Gene model
Location
KhC14 [2,962,780 / 2,965,048]
Amino acid sequence
Length: 347
>KH.C14.115.v2.A.nonSL5-3
RRFVKMSSRSFRASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLF
EDARDAKDAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNRGFRS
DMRCYNCSETGHFARDCPRSRGVGRRRRSRSYSRSRSRSRSYSKSRSRSPRRKRSRRSRS
RSTSSAERKSRSPRKSSREDRRRRTRSDRSSRSRSKSEDKKGSRSRSRSRDKDRKSRSRS
KSVEYIEKRDSRSRSRSADKSKKSRSKSLDRSRDRSASRSRSRSRSPRGNKSKSRSRSRT
PVNGVENGNSPRNRSRSRSRSKDNAPEDERQKEHSRSPSPNRSDNEN
Nucleotide sequence
Length: 1,361
>KH2012:KH.C14.115.v2.A.nonSL5-3
ACGCAGATTTGTTAAAATGTCGTCGAGGTCATTTCGTGCGAGCTCCGATCGAAAAGTTTA
CGTTGGCAATCTTGGAACGCACGCATCAAGAGAGGATCTTGAAGAAGAATTCAGCTACTA
CGGAAGATTGGACAGCGTTTGGGTCGCAAGAAACCCTCCAGGTTTTGCGTATGTTCTTTT
CGAAGATGCCCGAGATGCAAAAGATGCCGTTCGTGGATTAGATGGAAAAATAATTTGCGA
TCGAAAAGTAAGAGTTGACATTTCAAACTCCCGAAGTACCGGTCGGCCTGCACGACGTGG
TCCTGCTCCATATGATAGATATGGAGGAGGAGGTGGTGGTGGAAACCGAGGGTTTCGAAG
CGATATGAGATGTTACAACTGCAGCGAGACCGGTCACTTTGCACGTGATTGCCCAAGGTC
TAGAGGTGTGGGTAGGCGTCGCCGCTCCCGCTCTTATTCTAGGTCCCGTTCACGATCTCG
ATCCTACTCCAAGTCCAGATCTCGTAGTCCAAGGAGAAAGAGATCACGCAGAAGTCGATC
GCGCAGCACATCAAGTGCTGAGCGCAAAAGTCGCAGCCCAAGAAAATCAAGTCGTGAAGA
TCGTCGACGTAGGACCAGATCTGATCGCTCCAGCCGTTCCAGATCAAAATCGGAAGATAA
GAAAGGTTCTCGTTCCCGTTCAAGAAGTCGTGACAAAGATCGGAAGAGTCGCTCTCGATC
CAAATCCGTGGAGTATATTGAGAAGAGGGATTCTAGAAGTCGATCACGCAGTGCTGATAA
ATCAAAGAAGAGCAGATCAAAATCTCTGGATCGATCCAGGGATCGCAGTGCCTCAAGGAG
CAGATCTCGTAGCAGGAGTCCTCGGGGTAATAAATCTAAAAGTAGGTCCAGATCTCGTAC
CCCAGTGAATGGTGTCGAGAATGGAAATTCTCCACGGAATCGCAGTAGATCTCGTTCTAG
GAGCAAAGATAATGCACCCGAAGATGAGAGGCAAAAAGAACATTCCAGATCACCGAGTCC
CAATCGCTCTGATAATGAAAACTGATGATATTTTTAAAAAATTCGACCAACGCATAATTT
CTGTTCAATGACAGAAATGGTTCATTTTTGTATCCGCTGAACTGCAAACATTCCTAAAAC
GTTTGGGATCTTTTTATCCGATAAACTGTAACTTTTACACATGATCATCAATAATTACAG
TTTAAGTTTTAAGTTAATTTTATGAACACTAGATCTTTGTATTGTCACCATACTCGAAAA
TGCGTCATTTGAAAATCTTGTAAATTAGTTCGACCATCAAGTGTAAATAAAACGTTTGTG
TAGTTCATATAATATAAAGTTTTCAAAACGTTAAAACAAAA
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[9-119] 2.44E-27 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[11-91] 3.6E-22 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[17-90] 17.131 |
| SMART |
RRM_dom (IPR000504) - T[18-86] 4.3E-20 |
| Pfam |
RRM_dom (IPR000504) - T[19-84] 1.2E-14 |
| SUPERFAMILY |
Znf_CCHC_sf (IPR036875) - T[116-143] 7.33E-7 |
| ProSiteProfiles |
Znf_CCHC (IPR001878) - T[123-139] 11.07 |
| Pfam |
Znf_CCHC (IPR001878) - T[123-138] 8.6E-8 |
| SMART |
Znf_CCHC (IPR001878) - T[123-139] 4.4E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRSF3_HUMAN | 58.242 % | 109 | 7.18E-29 |
| SRSF7_HUMAN | 53.731 % | 134 | 1.23E-37 |