Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C14.115.v2.A.SL1-3

Possible name(s)

SRSF12; SRSF3; SRSF7

Gene model

KH2012:KH.C14.115

Location

KhC14 [2,962,763 / 2,965,048]

Sequences

Amino acid sequence

Length: 351

>KH.C14.115.v2.A.SL1-3
FLPVRRFVKMSSRSFRASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFA
YVLFEDARDAKDAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNR
GFRSDMRCYNCSETGHFARDCPRSRGVGRRRRSRSYSRSRSRSRSYSKSRSRSPRRKRSR
RSRSRSTSSAERKSRSPRKSSREDRRRRTRSDRSSRSRSKSEDKKGSRSRSRSRDKDRKS
RSRSKSVEYIEKRDSRSRSRSADKSKKSRSKSLDRSRDRSASRSRSRSRSPRGNKSKSRS
RSRTPVNGVENGNSPRNRSRSRSRSKDNAPEDERQKEHSRSPSPNRSDNEN

Nucleotide sequence

Length: 1,378

>KH2012:KH.C14.115.v2.A.SL1-3
ATTTAGTTTTTACCAGTACGCAGATTTGTTAAAATGTCGTCGAGGTCATTTCGTGCGAGC
TCCGATCGAAAAGTTTACGTTGGCAATCTTGGAACGCACGCATCAAGAGAGGATCTTGAA
GAAGAATTCAGCTACTACGGAAGATTGGACAGCGTTTGGGTCGCAAGAAACCCTCCAGGT
TTTGCGTATGTTCTTTTCGAAGATGCCCGAGATGCAAAAGATGCCGTTCGTGGATTAGAT
GGAAAAATAATTTGCGATCGAAAAGTAAGAGTTGACATTTCAAACTCCCGAAGTACCGGT
CGGCCTGCACGACGTGGTCCTGCTCCATATGATAGATATGGAGGAGGAGGTGGTGGTGGA
AACCGAGGGTTTCGAAGCGATATGAGATGTTACAACTGCAGCGAGACCGGTCACTTTGCA
CGTGATTGCCCAAGGTCTAGAGGTGTGGGTAGGCGTCGCCGCTCCCGCTCTTATTCTAGG
TCCCGTTCACGATCTCGATCCTACTCCAAGTCCAGATCTCGTAGTCCAAGGAGAAAGAGA
TCACGCAGAAGTCGATCGCGCAGCACATCAAGTGCTGAGCGCAAAAGTCGCAGCCCAAGA
AAATCAAGTCGTGAAGATCGTCGACGTAGGACCAGATCTGATCGCTCCAGCCGTTCCAGA
TCAAAATCGGAAGATAAGAAAGGTTCTCGTTCCCGTTCAAGAAGTCGTGACAAAGATCGG
AAGAGTCGCTCTCGATCCAAATCCGTGGAGTATATTGAGAAGAGGGATTCTAGAAGTCGA
TCACGCAGTGCTGATAAATCAAAGAAGAGCAGATCAAAATCTCTGGATCGATCCAGGGAT
CGCAGTGCCTCAAGGAGCAGATCTCGTAGCAGGAGTCCTCGGGGTAATAAATCTAAAAGT
AGGTCCAGATCTCGTACCCCAGTGAATGGTGTCGAGAATGGAAATTCTCCACGGAATCGC
AGTAGATCTCGTTCTAGGAGCAAAGATAATGCACCCGAAGATGAGAGGCAAAAAGAACAT
TCCAGATCACCGAGTCCCAATCGCTCTGATAATGAAAACTGATGATATTTTTAAAAAATT
CGACCAACGCATAATTTCTGTTCAATGACAGAAATGGTTCATTTTTGTATCCGCTGAACT
GCAAACATTCCTAAAACGTTTGGGATCTTTTTATCCGATAAACTGTAACTTTTACACATG
ATCATCAATAATTACAGTTTAAGTTTTAAGTTAATTTTATGAACACTAGATCTTTGTATT
GTCACCATACTCGAAAATGCGTCATTTGAAAATCTTGTAAATTAGTTCGACCATCAAGTG
TAAATAAAACGTTTGTGTAGTTCATATAATATAAAGTTTTCAAAACGTTAAAACAAAA

InterProScan

SUPERFAMILY	RBD_domain_sf (IPR035979) - T[9-123] 1.49E-27
Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[15-95] 3.6E-22
ProSiteProfiles	RRM_dom (IPR000504) - T[21-94] 17.131
SMART	RRM_dom (IPR000504) - T[22-90] 4.3E-20
Pfam	RRM_dom (IPR000504) - T[23-88] 1.2E-14
SUPERFAMILY	Znf_CCHC_sf (IPR036875) - T[120-147] 7.33E-7
SMART	Znf_CCHC (IPR001878) - T[127-143] 4.4E-5
Pfam	Znf_CCHC (IPR001878) - T[127-142] 8.7E-8
ProSiteProfiles	Znf_CCHC (IPR001878) - T[127-143] 11.07

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SRSF3_HUMAN	60.227 %	109	7.56E-29
SRSF7_HUMAN	53.731 %	134	1.75E-37