Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C14.115.v3.A.nonSL4-2

Possible name(s)

SRSF12; SRSF3; SRSF7

Gene model

KH2012:KH.C14.115

Location

KhC14 [2,962,789 / 2,963,803]

Sequences

Amino acid sequence

Length: 139

>KH.C14.115.v3.A.nonSL4-2
VKMSSRSFRASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLFEDA
RDAKDAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNRGFRSDMR
CYNCSETGHFARDCPRSRG

Nucleotide sequence

Length: 805

>KH2012:KH.C14.115.v3.A.nonSL4-2
TGTTAAAATGTCGTCGAGGTCATTTCGTGCGAGCTCCGATCGAAAAGTTTACGTTGGCAA
TCTTGGAACGCACGCATCAAGAGAGGATCTTGAAGAAGAATTCAGCTACTACGGAAGATT
GGACAGCGTTTGGGTCGCAAGAAACCCTCCAGGTTTTGCGTATGTTCTTTTCGAAGATGC
CCGAGATGCAAAAGATGCCGTTCGTGGATTAGATGGAAAAATAATTTGCGATCGAAAAGT
AAGAGTTGACATTTCAAACTCCCGAAGTACCGGTCGGCCTGCACGACGTGGTCCTGCTCC
ATATGATAGATATGGAGGAGGAGGTGGTGGTGGAAACCGAGGGTTTCGAAGCGATATGAG
ATGTTACAACTGCAGCGAGACCGGTCACTTTGCACGTGATTGCCCAAGGTCTAGAGGGTA
AGCTTAAAATTGTTTTGTTTAATTGCGGTTACTTTATTATCTTGTTAGAAGTATAGGTTT
TAAGGTTTACTTTGATGATCCTTCAACCCAACAATCATTGATGTGAACATTGCGCTCTCT
TATGGCACAGCTGAGTATGGAAACCTCACCAAAATATAATATTATAATTTGAAACAATTC
ATAAGCTATTAATTTAATTCCAAACTTTGCCGTGTCAAACTTTTAACTGAGCATATCACT
GCCCTTCTAGGCTGATTTTCATGTCACCGAGTGTACATTATTGATACGAGGCCCATGTAC
GTGGTGCACAGTGGCTCAGAGCGCCTAATGAACGATAGAGGGCATGAACGATATGTGATC
GTGGTGCAGTGTGCGTTTTTGTTCG

InterProScan

SUPERFAMILY	RBD_domain_sf (IPR035979) - T[7-116] 2.17E-28
Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[8-88] 5.0E-23
ProSiteProfiles	RRM_dom (IPR000504) - T[14-87] 17.131
SMART	RRM_dom (IPR000504) - T[15-83] 4.3E-20
Pfam	RRM_dom (IPR000504) - T[16-81] 1.9E-15
SUPERFAMILY	Znf_CCHC_sf (IPR036875) - T[112-138] 6.07E-7
ProSiteProfiles	Znf_CCHC (IPR001878) - T[120-136] 11.07
SMART	Znf_CCHC (IPR001878) - T[120-136] 4.4E-5
Pfam	Znf_CCHC (IPR001878) - T[120-135] 2.6E-8

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SRSF3_HUMAN	60.227 %	104	1.55E-29
SRSF7_HUMAN	54.615 %	127	2.09E-37