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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S5...'
  2. Clone 'cign062b11'
  3. Transcript 'Boleac.CG.SB_v3.S7.g...'
  4. Transcript 'KH2012:KH.C3.199.v1....'
  5. Transcript 'KH2012:KH.C14.115.v3...'

Transcript Model

Transcript Id

KH2012:KH.C14.115.v3.A.nonSL4-2

Possible name(s)

SRSF12; SRSF3; SRSF7

Location

KhC14 [2,962,789 / 2,963,803]

Sequences

Amino acid sequence

Length: 139

>KH.C14.115.v3.A.nonSL4-2
VKMSSRSFRASSDRKVYVGNLGTHASREDLEEEFSYYGRLDSVWVARNPPGFAYVLFEDA
RDAKDAVRGLDGKIICDRKVRVDISNSRSTGRPARRGPAPYDRYGGGGGGGNRGFRSDMR
CYNCSETGHFARDCPRSRG

Nucleotide sequence

Length: 805

>KH2012:KH.C14.115.v3.A.nonSL4-2
TGTTAAAATGTCGTCGAGGTCATTTCGTGCGAGCTCCGATCGAAAAGTTTACGTTGGCAA
TCTTGGAACGCACGCATCAAGAGAGGATCTTGAAGAAGAATTCAGCTACTACGGAAGATT
GGACAGCGTTTGGGTCGCAAGAAACCCTCCAGGTTTTGCGTATGTTCTTTTCGAAGATGC
CCGAGATGCAAAAGATGCCGTTCGTGGATTAGATGGAAAAATAATTTGCGATCGAAAAGT
AAGAGTTGACATTTCAAACTCCCGAAGTACCGGTCGGCCTGCACGACGTGGTCCTGCTCC
ATATGATAGATATGGAGGAGGAGGTGGTGGTGGAAACCGAGGGTTTCGAAGCGATATGAG
ATGTTACAACTGCAGCGAGACCGGTCACTTTGCACGTGATTGCCCAAGGTCTAGAGGGTA
AGCTTAAAATTGTTTTGTTTAATTGCGGTTACTTTATTATCTTGTTAGAAGTATAGGTTT
TAAGGTTTACTTTGATGATCCTTCAACCCAACAATCATTGATGTGAACATTGCGCTCTCT
TATGGCACAGCTGAGTATGGAAACCTCACCAAAATATAATATTATAATTTGAAACAATTC
ATAAGCTATTAATTTAATTCCAAACTTTGCCGTGTCAAACTTTTAACTGAGCATATCACT
GCCCTTCTAGGCTGATTTTCATGTCACCGAGTGTACATTATTGATACGAGGCCCATGTAC
GTGGTGCACAGTGGCTCAGAGCGCCTAATGAACGATAGAGGGCATGAACGATATGTGATC
GTGGTGCAGTGTGCGTTTTTGTTCG

InterProScan

SUPERFAMILY
RBD_domain_sf (IPR035979) - T[7-116] 2.17E-28
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[8-88] 5.0E-23
ProSiteProfiles
RRM_dom (IPR000504) - T[14-87] 17.131
SMART
RRM_dom (IPR000504) - T[15-83] 4.3E-20
Pfam
RRM_dom (IPR000504) - T[16-81] 1.9E-15
SUPERFAMILY
Znf_CCHC_sf (IPR036875) - T[112-138] 6.07E-7
ProSiteProfiles
Znf_CCHC (IPR001878) - T[120-136] 11.07
SMART
Znf_CCHC (IPR001878) - T[120-136] 4.4E-5
Pfam
Znf_CCHC (IPR001878) - T[120-135] 2.6E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SRSF3_HUMAN 60.227 % 104 1.55E-29
SRSF7_HUMAN 54.615 % 127 2.09E-37