- Transcript 'KH2012:KH.C14.156.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.156.v1.C.SL1-1
Possible name(s)
LRRC4B; LRRN1; LRRN2
Gene model
Location
KhC14 [673,242 / 678,843]
Amino acid sequence
Length: 823
>KH.C14.156.v1.C.SL1-1
KLNKCRILKMWLWLSITTIVCVVVNVKGCLELCQCNKQGNVSSVICNGWITQHNLSSGSQ
CSTELVLNSAEMAIYSNIEIRCYNVSFQLAPQAMFHKVKAISIHESHFEELPFQFLASLT
ALNRLNFSENRISDLVIPKRNNSYHMNHLDLVDLSKNEISEVKLYHNNLFSNVKALFLQQ
NRIGAIENIQRLPQLEILAVSDNPINLMDSDFSLSSTIQQMHLRNVSSVNALESCKTCCF
LNECAFLPPNLILLDLSNNHLMSIPTRHGLLAGLLHLQVLLLQNNNISIIRHDSFVDRCY
FKLREINLSNNRLIKLDGNAFAHLWQLNNLNLASNFLQHLPIKVAQSFLSLQGQKKQGNL
SLNGNPWSCDCLQHKLAKILTPNTTLSIICKIPQSLQGSELQNISLENLQCHNTSFAQKE
NVTAYEYKDVNLICTTLGAPRSEVKWFTPKHELISLETIAFNKEQQKSYSLSEFGDILTV
KSVRLSKTGIFKCFANNAVSSANQTIALAVILSPTSTIVYIVVACVAFMVAIVLNSVNMC
MYICEHMEIKRQYRKMLQAQEEEEKQNPPIRSRSKNLDESLASLNANKHYGRYDFTCQQM
FLDTVVKGAHSVKKTLYDARHSEFSVNMWEYAANLRERLHIEMPSSVQLPSISMPTISMP
TISMPSIPTMQDININIEKLSSSMVQRSHTLASSVGSVFTLKRWMQQQNSSDTESRESDD
NLDDGPSITQVTVHVHTPNEEPSIPTPLQLNEEPCAHNTGDSATKLKKKTLKECYTEKAV
TFYPQESEHFLEPQTSEVRNVVTPLLATISGGVDNQWSYETSV
Nucleotide sequence
Length: 3,442
>KH2012:KH.C14.156.v1.C.SL1-1
CCTATTTTATTCAAATTAGATCAAGTGTGTATAGAATGTTGGGTGGAATTGTAAAAGTTG
AATAAATGTAGAATTCTAAAAATGTGGCTGTGGTTGTCCATCACAACTATTGTGTGCGTT
GTGGTGAATGTTAAAGGATGTCTTGAGTTATGTCAGTGCAACAAACAAGGCAATGTCAGC
AGTGTAATTTGTAATGGATGGATAACACAACACAACTTGTCAAGTGGTTCACAATGTTCT
ACAGAACTGGTTTTAAACTCTGCAGAAATGGCCATTTACAGCAACATAGAAATTCGCTGC
TACAATGTTTCGTTTCAGCTTGCACCCCAAGCTATGTTCCACAAAGTGAAAGCAATTTCA
ATACATGAATCTCACTTTGAAGAACTACCATTCCAATTCCTTGCAAGTTTGACTGCTTTA
AACAGACTAAATTTCTCAGAAAACAGGATTTCCGATTTAGTTATCCCAAAAAGAAACAAT
TCGTATCATATGAACCATCTTGATCTAGTAGACCTATCAAAAAATGAGATTTCTGAAGTC
AAACTTTATCACAACAATTTATTTTCTAATGTGAAAGCGCTATTTCTCCAACAAAATAGA
ATTGGTGCTATTGAAAACATACAACGTTTACCCCAACTTGAAATACTGGCTGTATCAGAC
AATCCAATCAATTTAATGGATTCAGATTTCAGTCTTTCTTCTACAATACAACAGATGCAC
TTACGCAATGTATCGTCTGTGAATGCATTGGAAAGCTGCAAAACATGTTGCTTCTTAAAC
GAGTGTGCATTTCTACCTCCAAATCTTATACTTTTAGACCTTAGCAACAATCATTTAATG
TCAATTCCGACGAGACATGGCCTGCTGGCGGGCCTGCTTCATTTGCAAGTGTTGTTACTT
CAAAATAATAACATCTCAATCATTAGACATGATAGCTTTGTGGACAGATGCTACTTTAAA
CTGAGAGAAATCAACCTTTCAAACAATAGGCTCATTAAACTAGATGGAAATGCATTCGCT
CATCTCTGGCAACTTAACAACTTAAATTTAGCAAGCAATTTTCTACAACATCTTCCAATT
AAAGTTGCTCAATCTTTCCTTTCATTACAAGGTCAGAAGAAACAAGGAAATTTATCATTA
AATGGAAACCCATGGTCGTGTGATTGCTTACAGCATAAACTAGCTAAAATCTTAACACCT
AACACTACTCTATCCATCATATGCAAAATTCCGCAGTCTTTACAAGGCAGTGAGCTTCAG
AATATCTCTCTTGAAAATTTGCAATGTCATAACACAAGTTTCGCACAGAAAGAAAATGTC
ACAGCTTACGAATACAAAGATGTAAATCTTATCTGTACCACATTAGGTGCCCCACGGAGT
GAAGTGAAGTGGTTTACCCCAAAGCATGAATTAATATCTTTGGAGACAATTGCTTTTAAC
AAAGAACAGCAAAAGAGTTACAGCCTGTCAGAATTTGGTGATATTTTGACAGTTAAATCT
GTTCGACTTTCAAAGACTGGAATTTTTAAGTGCTTTGCTAACAACGCAGTGAGTTCTGCG
AACCAAACCATTGCACTTGCTGTAATACTAAGCCCAACCAGCACCATTGTGTATATAGTG
GTAGCTTGTGTTGCTTTTATGGTTGCTATTGTACTCAACTCTGTTAATATGTGCATGTAT
ATATGCGAGCATATGGAGATAAAGAGACAATATCGAAAGATGTTGCAAGCTCAGGAAGAA
GAAGAGAAACAGAATCCTCCAATCAGATCCCGTTCCAAAAACTTAGATGAGTCTCTTGCA
TCACTCAATGCAAACAAGCATTATGGCCGGTATGACTTTACATGCCAGCAGATGTTTTTG
GATACTGTTGTCAAAGGTGCTCACTCTGTTAAGAAAACTCTTTATGACGCTCGGCATTCT
GAATTCTCTGTTAATATGTGGGAGTATGCTGCAAACTTGAGGGAGAGACTTCACATTGAA
ATGCCAAGCAGTGTACAACTACCAAGTATATCTATGCCTACAATTTCTATGCCAACTATA
TCAATGCCTAGTATCCCCACAATGCAGGATATCAACATTAACATTGAAAAACTAAGTTCG
AGCATGGTTCAACGCAGTCATACACTTGCTTCATCTGTGGGATCTGTCTTTACTTTAAAA
AGATGGATGCAACAACAAAATTCAAGTGATACTGAAAGCAGGGAGTCTGATGATAATTTA
GATGATGGTCCATCCATTACCCAAGTAACTGTACACGTTCACACACCAAATGAAGAACCA
AGTATACCAACGCCATTACAGCTTAACGAAGAACCTTGCGCACATAATACCGGGGATTCT
GCTACAAAACTTAAGAAGAAAACCTTAAAGGAATGTTATACTGAAAAAGCCGTGACATTC
TACCCGCAAGAATCAGAGCATTTTCTTGAACCTCAAACCAGTGAAGTTAGAAACGTGGTC
ACACCGCTGCTTGCAACTATTAGTGGGGGTGTGGACAACCAATGGAGTTATGAGACGTCT
GTCTAATGCTGCACTTTATATTCAATTTTAAACTATGAGGCTTTTCAAAACGGAAAATTA
CAAAATAATTTTTTGGGAGTTAACTAAAACAAATTTTTAATAAAAAACTGTAAGCCAGAA
ATTAAGCTTACACACATTGTAATTTAGTCGTAACTTCTTACATGGTGTAGGAGTTAAGGT
TGGAAAGCACTGGTTTAAATGTATATTAACATAATATATTTGTCACTGTGTAATTGCTCC
ACATATTACTATGTAAATAGCTTGCACCACTCATGCGCTCATAAAGTAGGTTGGGGGAAG
ATGGGACACCATTTTATTATATTTTCTTGTCCCATTAGGCACCAGACAAAGAACACTAAA
ATGACTCTAGTAGACCGTTGTTAATTGTTTAAACATCATCAGTATTTGGATATTATGTGC
TAAGGTGTCATGTCTTTCCCACACCACTATATATTATAAAAAACTAAAAAGCATAGGTGC
CAAACCTTTTAAATAAAGGGAGGCAGGGATAGTTAAATGCACATTCATGCAAAACAGTTT
TTGTTTGTAATGTTTACTGATTAATGCAGTGCAAAAAACTCCCTGTCACCCCATGTTTGG
CGCCTATATAATAAACAGATTATTCCGTCTGCATATATTATAATATGACTACTCAACCCT
AGATAGTTAATTTTTCAGCCCATGCATCCTATAACGAGTTGTAGAGCTGTGTGCAATATA
TATAAGTTGTCATACTGATTTGTTTGTTTTACCATCAAATTTGTGTTAGATTTAATGAAT
TGGTTTTTAAAATATAATCGGTTAAAAAATATGTGTTTTTCATTTATTTTTAAATGAATG
AACATATTGTTGTTGATTTAATTGTCTATTTAGCACTTTGTAAATTGCTTAGATTTTATA
CACTTACATGTTATGCATAAAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[28-297] 6.8E-22 - T[298-412] 8.0E-17 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[119-140] 340.0 - T[146-172] 250.0 - T[192-214] 80.0 - T[249-273] 20.0 - T[274-297] 0.84 - T[302-323] 26.0 - T[324-347] 130.0 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[121-142] 5.456 - T[148-169] 5.456 - T[172-193] 7.05 - T[194-215] 5.448 - T[250-271] 7.92 - T[276-297] 6.634 - T[302-323] 7.273 - T[326-347] 6.018 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[382-509] 9.283 |
| Gene3D |
Ig-like_fold (IPR013783) - T[413-510] 5.3E-12 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[419-513] 3.71E-11 |
| SMART |
Ig_sub (IPR003599) - T[419-511] 0.0018 |
| Pfam |
Ig_I-set (IPR013098) - T[420-510] 1.7E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRRN1_HUMAN | 24.667 % | 90.9 | 9.32E-19 |
| LRRN2_HUMAN | 25.462 % | 99.4 | 2.28E-21 |
| LRC15_HUMAN | 29.236 % | 84.3 | 8.44E-17 |