Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C14.163.v1.A.SL1-1

Possible name(s)

COL7A1; PTPRJ; TNN

Gene model

KH2012:KH.C14.163

Location

KhC14 [2,908,125 / 2,912,871]

Sequences

Amino acid sequence

Length: 447

>KH.C14.163.v1.A.SL1-1
DFKFTTNMNKLLFPLITILVSVSAQQLPPPTDLAAVARSNAVGITWSPVEGAEKYVATIV
SNDMTVDTSETRAAFGGLEPMTTYTASVVAVGVNDSYGVPAFIDFETLAAKPTNLQNVYE
ETTENMLVISWDQVNGTIDHLVEITTTDGGPVDSASISVVDNKAYINGLEKYTFYGLTVR
AITDGGQMGDQEEFSARTAGKGLKVTAWWVGATTFGGEATIYRDFIIPPGEFHVVVQLTC
PVAEIVVWNANLDMDNSDTSTGMYRIVQDELWMRERPEINFNFNRGNLTDECDLQVGNIT
VNFNPPPVAVVADTPQDTPLDITTSSWGVGGMVQINMGVTYINPANPDAGDMGGTLIAKP
ASGTFVIVVDSGSACPEGITVTSKWGLTTPVSLQPDPSTPNILYFVQLGNQWFSNSAGFV
YTRNCLDVSGISVSVSENPSLVALAFN

Nucleotide sequence

Length: 1,644

>KH2012:KH.C14.163.v1.A.SL1-1
GACTTTAAATTTACTACAAATATGAATAAATTACTTTTCCCACTGATCACCATTTTGGTT
TCTGTGTCCGCACAACAACTGCCACCCCCAACCGACCTTGCAGCTGTAGCAAGATCGAAT
GCCGTTGGTATAACATGGTCCCCTGTTGAAGGAGCTGAAAAATACGTGGCAACTATAGTT
TCGAACGATATGACTGTCGACACTTCGGAAACCAGAGCAGCGTTCGGTGGTCTTGAACCA
ATGACAACTTACACTGCTAGTGTTGTAGCTGTTGGTGTGAACGATTCCTATGGCGTTCCT
GCATTCATTGACTTTGAGACTTTGGCAGCAAAGCCTACAAACTTGCAAAATGTATACGAG
GAGACAACGGAAAACATGTTGGTTATATCTTGGGACCAAGTTAATGGAACCATTGACCAT
TTGGTAGAAATAACTACAACCGATGGGGGACCAGTTGATTCTGCATCAATCAGCGTGGTC
GACAACAAGGCATACATCAACGGACTTGAGAAATACACTTTCTATGGCCTCACTGTCCGT
GCGATCACCGACGGAGGGCAGATGGGAGACCAAGAAGAATTCAGTGCAAGAACAGCCGGA
AAAGGCTTGAAAGTCACTGCATGGTGGGTTGGCGCAACTACCTTTGGAGGAGAAGCCACA
ATCTACAGAGACTTCATTATTCCTCCTGGAGAATTCCATGTGGTGGTACAACTGACCTGC
CCGGTTGCTGAAATAGTGGTATGGAACGCTAACCTTGATATGGATAACTCCGACACTTCA
ACCGGTATGTACCGCATCGTGCAAGACGAGTTGTGGATGAGAGAACGACCTGAGATCAAC
TTTAACTTTAACAGAGGAAACCTTACCGATGAGTGCGACCTGCAGGTAGGAAACATCACC
GTTAATTTCAACCCCCCACCAGTTGCTGTTGTAGCAGACACACCACAAGATACACCACTT
GATATAACTACGTCGTCTTGGGGAGTCGGCGGTATGGTTCAAATTAACATGGGAGTTACA
TACATCAACCCCGCCAACCCGGATGCCGGTGATATGGGAGGTACTTTGATTGCAAAACCT
GCAAGTGGAACTTTTGTTATCGTCGTCGACAGCGGTTCTGCTTGCCCAGAGGGTATTACT
GTCACTTCCAAATGGGGATTGACCACACCTGTTAGCTTGCAGCCTGATCCCAGCACACCA
AACATCTTGTATTTTGTCCAACTTGGAAACCAGTGGTTCAGTAACAGCGCAGGTTTCGTT
TACACCCGAAACTGTCTTGACGTGAGTGGCATTTCGGTGTCTGTATCTGAAAATCCAAGT
TTGGTTGCTTTGGCTTTCAATTAATTAAACAGTGCTTGTAAATTCGACTAAACAAAAACT
TAAACAGAAATTAAACTTATTTGGAACATTGTACGTAATACATGACATTGGCTTAAAATA
GACCAGACAGGATGTGAAATGCTGCAGTTATTACTACTTTCTTCATATGTGCAAATGATC
TATTCTAAATAGCCTAATTCTTAAGCTTTTAGAATCCATTACTTTGATTTTAATCTGGAT
CATATCGTAAACTGTCTTAGTTAATGTTAATATATTTATACTAAGAATCGAACTTCGATA
TTAATAAACAACAAATCAAAACTA

InterProScan

Gene3D	Ig-like_fold (IPR013783) - T[20-109] 9.2E-9 - T[110-202] 6.8E-9
SMART	FN3_dom (IPR003961) - T[27-96] 0.0052 - T[109-188] 0.23
ProSiteProfiles	FN3_dom (IPR003961) - T[29-110] 7.283 - T[111-202] 10.612
SUPERFAMILY	FN3_sf (IPR036116) - T[32-188] 7.06E-13
CDD	FN3_dom (IPR003961) - T[111-186] 0.00224388
Pfam	FN3_dom (IPR003961) - T[119-187] 2.2E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value