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  1. Clone 'cima822a21' > 
  2. Transcript 'KH2012:KH.C14.172.v1...'

Transcript Model

Transcript Id

KH2012:KH.C14.172.v1.A.nonSL4-1

Possible name(s)

CSDE1

Gene model

KH2012:KH.C14.172

Location

KhC14 [2,664,653 / 2,682,552]

Sequences

Amino acid sequence

Length: 1,117

>KH.C14.172.v1.A.nonSL4-1
QSSFIQIMHRSIMWPTTNGTPQNSLSFSNSLSSLLGAQPFRPQTPVLSNQQKVLVNGGIS
ALQQHQQEAKERQMVNRRSLNRTASCGLFPQNGIVRPSALNQHRALQRSTSFDSPRMMST
PGSVTPISGSTSPIPLVAATAAGVTNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFH
YSQFHGEAHTLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVAFEVLSEDRILGEVTNP
APPLSLIPGQNLMNVVPGGTTGIAGHGYRPSEKGDPVISGKLGSLSYERMGEFFFLHYSA
SDLTNPDLALLPGDKVSFNIATEKRTGVMRARKITLVERAPPKRFNGIVTAMKESFGFIE
RSDIVKEIFFHYSEVLANVPDLHVGDHVEFSVQERNNKDVATEIRLLPLGTVQLEEISSE
LFVGTIDKPLPAKAPNKVMSESTIAGGDATSPNQTLKSGAIVNGGSSPPQPSLVLAGIIS
YIAPTGETFKIRFGEKDRAANCLHTLCKGDKVSFLTITDKRNGQQRAAGVTLLLDKTIAA
SKEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPTHHVRMSDEVQFTVLLDPVAE
KQRMHATRIRVLPKGTVIFHIISDQSFTGIVEALPGASPNTAPKSPTDCLFSPALGPNPG
IIVYSVGVQADPSADTVARIPFASKDFKDWMEALSLKVGDTVEFKICEVKRTAAKSAVDI
KLLTRHSDYDVNNAASRRRTLSHSMSAASLKLETLPEEASFPTIVLENVPVKSKSTTPEV
TMSPKKPSSEVNIAKEDKDESEIVEKLSEASFSPRSDNIETSCGEQCYGWISTLKDTFGF
IESLNHGSEIFFHYSEMQAPVDKYKAGCPVTYVTGIKEEKACALQVEVITDEEMPTSDVV
SSKIIKGKVLKPLKSVNPSQTSYQGLIEYKETNEADETTIKTISYSPLSLSDRRDFIQVG
DKVTFQVSTDINSNCQRAANVNVNRETVKATVDSIKGEFGFINYEVKGGDTTGGSGKLFF
HMSEVRDATQQITAGSTVEFSVIYNQRSGKFSASKVRLAEAQPKQQRPERLRLRSTCETT
GPTVSVLRQPRGPTENTTGFAVVRHTEADDSQETENA

Nucleotide sequence

Length: 4,440

>KH2012:KH.C14.172.v1.A.nonSL4-1
AGCAATTAGGCCGTAGCCCGAAGAGCTTTCAGTTCTAGAAATGTTCAGTAACTAATTCAT
TTTATTTCGGTAAATTACCGCGAGTTTGAACGTCAACCAAATTGCAGTTAAACGTAACTA
CTGCAACGGAGTGTGCAATTACAAGTCTTACAGCATATTCATAAAGAGCAAACAGCTTGT
TTTTCAATACAAAAACCAACTAAGCAAAGAACCTCATATAACAAAGTTCATTTATACAGA
TTATGCACAGATCAATAATGTGGCCCACCACAAATGGAACACCACAAAATTCATTGTCTT
TTAGCAACTCTCTCAGCAGTTTGCTTGGAGCTCAACCATTTCGACCTCAAACACCTGTCC
TATCAAACCAGCAAAAAGTTCTCGTAAATGGTGGAATATCTGCCCTACAGCAACACCAGC
AAGAAGCAAAAGAGCGCCAAATGGTGAACCGACGTTCCCTCAATCGCACAGCAAGTTGTG
GTTTGTTTCCACAAAACGGGATTGTTCGACCATCTGCGCTTAACCAACACCGTGCATTAC
AAAGATCTACAAGTTTTGATTCGCCTCGAATGATGAGCACCCCAGGTTCTGTAACCCCAA
TATCTGGCTCTACATCCCCGATACCTCTTGTTGCTGCCACAGCTGCAGGCGTGACAAACA
GCAATGGCTACAGAAGTCGTGAGACTGGTGTCATCGAAAAGTTGCTTGTTTCTTACGGAT
TTATTAAATGCGCTGACAGAGAAGGCCGTTTGTTTTTCCACTATAGTCAGTTCCATGGAG
AAGCCCACACTTTGCACATAAATGATGAAATTGAGTTTGAAGTGTCAATGGACACACGCA
CTGGTAAACCTGTTGCAGTTCAAGTTGTAAAACTTCAGAAAGGAACTGTAGCCTTTGAAG
TACTAAGTGAAGATCGCATACTAGGTGAAGTGACAAACCCAGCACCACCACTATCCCTAA
TACCTGGTCAGAATTTAATGAACGTGGTTCCTGGTGGAACTACTGGCATAGCTGGTCATG
GGTATAGGCCCAGTGAAAAAGGAGACCCAGTTATATCTGGAAAACTTGGGAGTTTATCAT
ATGAAAGAATGGGGGAGTTTTTCTTCTTACATTACTCAGCAAGCGATCTAACCAACCCCG
ACCTTGCATTGCTACCTGGTGATAAAGTTTCATTCAACATTGCTACCGAAAAAAGAACTG
GAGTAATGCGAGCACGAAAGATAACTCTGGTAGAGAGAGCTCCTCCAAAAAGATTCAACG
GGATTGTTACGGCAATGAAGGAATCTTTCGGATTTATTGAAAGATCTGATATCGTGAAAG
AGATATTTTTCCACTACAGTGAAGTTCTTGCTAACGTGCCAGACTTACACGTTGGTGACC
ATGTTGAATTCAGCGTGCAGGAACGTAACAACAAAGACGTGGCAACAGAAATCCGGTTGT
TGCCGCTAGGAACTGTTCAACTCGAAGAAATTTCGAGCGAACTATTTGTTGGGACAATCG
ATAAACCACTTCCTGCAAAAGCTCCAAACAAGGTTATGAGCGAGTCTACCATCGCTGGTG
GTGATGCAACTTCTCCCAACCAGACTTTAAAGAGTGGGGCCATCGTTAACGGGGGTTCTT
CACCCCCCCAACCATCCCTCGTACTTGCTGGCATTATATCTTACATTGCACCCACTGGTG
AAACATTTAAAATACGATTTGGAGAGAAGGATAGAGCTGCTAACTGCCTCCATACACTTT
GTAAAGGAGATAAGGTTTCATTCTTGACAATAACCGACAAACGAAATGGTCAACAGCGGG
CTGCAGGTGTTACTTTGCTACTTGATAAAACTATCGCGGCAAGCAAGGAGAAGCGAGAAC
AAGGTATCGTAGCTGCAGTCAAAGAGGGGTTCGGGTTCATCAAGTGTGTGGAGCGTGACT
CTCGCCTCTTCTTCCACTGCTGTGAGATGTTGGATCCCACTCATCATGTGAGGATGTCAG
ATGAAGTTCAATTTACCGTCCTCCTGGACCCAGTTGCTGAAAAACAAAGGATGCATGCAA
CGCGTATTCGAGTTCTACCCAAAGGAACAGTCATCTTCCATATAATATCTGATCAAAGCT
TCACTGGCATAGTAGAGGCTTTACCTGGGGCATCCCCTAACACAGCACCAAAAAGCCCAA
CAGATTGCCTATTCAGTCCTGCCCTTGGCCCCAACCCCGGTATAATAGTTTACTCAGTTG
GTGTACAAGCTGACCCATCAGCAGACACGGTAGCAAGGATTCCTTTTGCTTCCAAAGATT
TCAAAGATTGGATGGAAGCTTTAAGTCTCAAAGTTGGGGACACAGTTGAGTTTAAGATTT
GCGAAGTGAAACGAACCGCAGCTAAAAGCGCAGTTGATATAAAACTGCTGACTCGTCATT
CCGATTATGATGTAAACAATGCTGCCAGTCGGCGAAGAACGCTTAGTCATTCAATGTCGG
CTGCGTCTTTGAAGCTGGAAACATTGCCAGAGGAAGCTTCCTTTCCAACTATTGTGCTTG
AGAATGTACCAGTGAAGAGCAAATCTACCACACCAGAAGTAACCATGTCGCCCAAAAAAC
CTTCAAGTGAAGTAAATATTGCCAAAGAAGATAAGGATGAAAGTGAAATTGTTGAAAAAT
TGTCAGAAGCTTCATTCTCTCCAAGATCAGATAATATTGAAACATCGTGTGGTGAACAAT
GTTACGGTTGGATAAGCACCTTAAAAGACACGTTCGGATTCATAGAATCGCTCAACCATG
GAAGCGAAATTTTCTTTCACTACAGTGAGATGCAAGCTCCTGTGGATAAATATAAAGCTG
GCTGTCCTGTTACTTATGTAACTGGAATTAAAGAAGAGAAAGCTTGTGCATTGCAAGTTG
AAGTGATAACAGATGAGGAAATGCCAACTTCTGATGTTGTGTCAAGTAAAATAATCAAAG
GCAAGGTGTTGAAGCCACTTAAGTCAGTAAATCCATCTCAAACAAGTTACCAAGGGTTGA
TAGAATACAAAGAAACCAATGAAGCAGATGAAACCACGATCAAGACAATCTCATACAGCC
CACTTAGTCTTAGTGATAGGAGAGATTTCATTCAAGTTGGTGACAAAGTGACTTTCCAGG
TCAGCACAGACATTAACAGCAACTGCCAAAGAGCTGCTAATGTGAATGTGAATCGTGAAA
CTGTCAAAGCTACAGTGGACAGCATTAAAGGAGAGTTCGGTTTCATAAACTACGAGGTAA
AGGGTGGAGATACCACTGGGGGCAGCGGTAAGCTATTTTTCCACATGTCTGAGGTGCGTG
ATGCAACTCAACAAATAACTGCTGGTTCTACAGTAGAATTCTCAGTCATATACAACCAAA
GAAGCGGCAAGTTCTCTGCATCTAAAGTTCGACTTGCAGAAGCGCAACCAAAACAACAAA
GACCCGAACGCTTACGACTACGCAGCACTTGTGAAACCACTGGACCAACTGTGTCTGTGT
TGCGCCAACCAAGGGGTCCCACTGAAAACACAACGGGATTTGCTGTAGTGCGTCACACAG
AAGCAGATGATAGTCAGGAAACAGAGAATGCATAAACCAACGACGAAAACATTATTTCTG
ATTAAAGACCTATGATGCTTTGTTTAACTCTACTTGTTTTCTGTTTGGGGAATTCCCCTC
TCATTCCACATACCCAGCCATACATCAAACCTTGATATGCAGTTTTTGGATGCAGTGCAC
ATATTGAAAAGTGACACTTTTTTTCCGTTTTTATTGTTTCAGTTCAAGGCAATTCACTGC
TTTTGATTTGTTTTCTATTTTTACTTTCAGGCGTTGTTCTGTTAAAATGTAAAAAAACGC
CGACGCGATTTCGTGTCTGTTTGTCCAAAGCCAAAACATTCCTACAGTTTTAAAGTAACA
AGAAAACGCCCGATTCCTTATTTTTCCCAATGAAATCAAATCAAAAAATCGGAATAACCA
AACTCAAAGCCAGCCCACAATTGTCAACTTTTTAATATCAGTATTTTACACCTAAGTAAC
GGCGTCTATTGCGTTCTATTCTCAGTTTTCACTGTGCCTGCACCTCCAATGTGGTTGTGC
AAAATGACCCAAATTAGTTACTACAAGCTTATGTTCCTGCTGTTTAAATTGCAACTGAAT
CCCGTCCCAGTTAAAACTACTGCCTGAATCTGTTTCGGGTACGTTTCTGAATGTATCAAT
TTTGATATTGCAATTTTTGTGTCTTTTCTTCGGTGCTAACACGTATGTTCACATGTAGAT
TTGCGTTAAACACTGTTTCTTTTGCTACCTTGTTGTATATATTTGTTTATAATACTACCA
ACATTTTCAAAGGAAGCCAATTTTTTTCCCTTATTCACTTTGTTATTGACCCCCGTTCAT
CTTTATAATATATTTTGGGTGTTACGGTTTCATTTTGAAATAAAATTGCTGCTTTCAAAA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[147-222] 1.71E-16 - T[343-409] 2.04E-14 - T[538-617] 6.39E-13 - T[822-890] 4.46E-11 - T[987-1059] 3.43E-10
Pfam
CSP_DNA-bd (IPR002059) - T[155-217] 7.8E-12 - T[346-405] 3.3E-14 - T[547-608] 3.5E-6 - T[828-887] 5.0E-6 - T[989-1057] 1.9E-6
SMART
CSD (IPR011129) - T[155-218] 3.2E-11 - T[346-407] 4.1E-13 - T[547-612] 0.0014 - T[828-889] 0.26 - T[989-1059] 0.035
CDD
CSP_DNA-bd (IPR002059) - T[165-217] 1.80016E-9 - T[343-406] 1.77967E-11 - T[987-1058] 7.44931E-7
ProSitePatterns
Cold-shock_CS (IPR019844) - T[165-184] . - T[356-375] . - T[838-857] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CSDE1_HUMAN 40.204 % 362 4.31E-110