- Transcript 'KH2012:KH.C14.172.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.172.v1.A.nonSL5-1
Possible name(s)
CSDE1
Gene model
Location
KhC14 [2,664,651 / 2,682,552]
Amino acid sequence
Length: 1,117
>KH.C14.172.v1.A.nonSL5-1
QSSFIQIMHRSIMWPTTNGTPQNSLSFSNSLSSLLGAQPFRPQTPVLSNQQKVLVNGGIS
ALQQHQQEAKERQMVNRRSLNRTASCGLFPQNGIVRPSALNQHRALQRSTSFDSPRMMST
PGSVTPISGSTSPIPLVAATAAGVTNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFH
YSQFHGEAHTLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVAFEVLSEDRILGEVTNP
APPLSLIPGQNLMNVVPGGTTGIAGHGYRPSEKGDPVISGKLGSLSYERMGEFFFLHYSA
SDLTNPDLALLPGDKVSFNIATEKRTGVMRARKITLVERAPPKRFNGIVTAMKESFGFIE
RSDIVKEIFFHYSEVLANVPDLHVGDHVEFSVQERNNKDVATEIRLLPLGTVQLEEISSE
LFVGTIDKPLPAKAPNKVMSESTIAGGDATSPNQTLKSGAIVNGGSSPPQPSLVLAGIIS
YIAPTGETFKIRFGEKDRAANCLHTLCKGDKVSFLTITDKRNGQQRAAGVTLLLDKTIAA
SKEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPTHHVRMSDEVQFTVLLDPVAE
KQRMHATRIRVLPKGTVIFHIISDQSFTGIVEALPGASPNTAPKSPTDCLFSPALGPNPG
IIVYSVGVQADPSADTVARIPFASKDFKDWMEALSLKVGDTVEFKICEVKRTAAKSAVDI
KLLTRHSDYDVNNAASRRRTLSHSMSAASLKLETLPEEASFPTIVLENVPVKSKSTTPEV
TMSPKKPSSEVNIAKEDKDESEIVEKLSEASFSPRSDNIETSCGEQCYGWISTLKDTFGF
IESLNHGSEIFFHYSEMQAPVDKYKAGCPVTYVTGIKEEKACALQVEVITDEEMPTSDVV
SSKIIKGKVLKPLKSVNPSQTSYQGLIEYKETNEADETTIKTISYSPLSLSDRRDFIQVG
DKVTFQVSTDINSNCQRAANVNVNRETVKATVDSIKGEFGFINYEVKGGDTTGGSGKLFF
HMSEVRDATQQITAGSTVEFSVIYNQRSGKFSASKVRLAEAQPKQQRPERLRLRSTCETT
GPTVSVLRQPRGPTENTTGFAVVRHTEADDSQETENA
Nucleotide sequence
Length: 4,442
>KH2012:KH.C14.172.v1.A.nonSL5-1
GTAGCAATTAGGCCGTAGCCCGAAGAGCTTTCAGTTCTAGAAATGTTCAGTAACTAATTC
ATTTTATTTCGGTAAATTACCGCGAGTTTGAACGTCAACCAAATTGCAGTTAAACGTAAC
TACTGCAACGGAGTGTGCAATTACAAGTCTTACAGCATATTCATAAAGAGCAAACAGCTT
GTTTTTCAATACAAAAACCAACTAAGCAAAGAACCTCATATAACAAAGTTCATTTATACA
GATTATGCACAGATCAATAATGTGGCCCACCACAAATGGAACACCACAAAATTCATTGTC
TTTTAGCAACTCTCTCAGCAGTTTGCTTGGAGCTCAACCATTTCGACCTCAAACACCTGT
CCTATCAAACCAGCAAAAAGTTCTCGTAAATGGTGGAATATCTGCCCTACAGCAACACCA
GCAAGAAGCAAAAGAGCGCCAAATGGTGAACCGACGTTCCCTCAATCGCACAGCAAGTTG
TGGTTTGTTTCCACAAAACGGGATTGTTCGACCATCTGCGCTTAACCAACACCGTGCATT
ACAAAGATCTACAAGTTTTGATTCGCCTCGAATGATGAGCACCCCAGGTTCTGTAACCCC
AATATCTGGCTCTACATCCCCGATACCTCTTGTTGCTGCCACAGCTGCAGGCGTGACAAA
CAGCAATGGCTACAGAAGTCGTGAGACTGGTGTCATCGAAAAGTTGCTTGTTTCTTACGG
ATTTATTAAATGCGCTGACAGAGAAGGCCGTTTGTTTTTCCACTATAGTCAGTTCCATGG
AGAAGCCCACACTTTGCACATAAATGATGAAATTGAGTTTGAAGTGTCAATGGACACACG
CACTGGTAAACCTGTTGCAGTTCAAGTTGTAAAACTTCAGAAAGGAACTGTAGCCTTTGA
AGTACTAAGTGAAGATCGCATACTAGGTGAAGTGACAAACCCAGCACCACCACTATCCCT
AATACCTGGTCAGAATTTAATGAACGTGGTTCCTGGTGGAACTACTGGCATAGCTGGTCA
TGGGTATAGGCCCAGTGAAAAAGGAGACCCAGTTATATCTGGAAAACTTGGGAGTTTATC
ATATGAAAGAATGGGGGAGTTTTTCTTCTTACATTACTCAGCAAGCGATCTAACCAACCC
CGACCTTGCATTGCTACCTGGTGATAAAGTTTCATTCAACATTGCTACCGAAAAAAGAAC
TGGAGTAATGCGAGCACGAAAGATAACTCTGGTAGAGAGAGCTCCTCCAAAAAGATTCAA
CGGGATTGTTACGGCAATGAAGGAATCTTTCGGATTTATTGAAAGATCTGATATCGTGAA
AGAGATATTTTTCCACTACAGTGAAGTTCTTGCTAACGTGCCAGACTTACACGTTGGTGA
CCATGTTGAATTCAGCGTGCAGGAACGTAACAACAAAGACGTGGCAACAGAAATCCGGTT
GTTGCCGCTAGGAACTGTTCAACTCGAAGAAATTTCGAGCGAACTATTTGTTGGGACAAT
CGATAAACCACTTCCTGCAAAAGCTCCAAACAAGGTTATGAGCGAGTCTACCATCGCTGG
TGGTGATGCAACTTCTCCCAACCAGACTTTAAAGAGTGGGGCCATCGTTAACGGGGGTTC
TTCACCCCCCCAACCATCCCTCGTACTTGCTGGCATTATATCTTACATTGCACCCACTGG
TGAAACATTTAAAATACGATTTGGAGAGAAGGATAGAGCTGCTAACTGCCTCCATACACT
TTGTAAAGGAGATAAGGTTTCATTCTTGACAATAACCGACAAACGAAATGGTCAACAGCG
GGCTGCAGGTGTTACTTTGCTACTTGATAAAACTATCGCGGCAAGCAAGGAGAAGCGAGA
ACAAGGTATCGTAGCTGCAGTCAAAGAGGGGTTCGGGTTCATCAAGTGTGTGGAGCGTGA
CTCTCGCCTCTTCTTCCACTGCTGTGAGATGTTGGATCCCACTCATCATGTGAGGATGTC
AGATGAAGTTCAATTTACCGTCCTCCTGGACCCAGTTGCTGAAAAACAAAGGATGCATGC
AACGCGTATTCGAGTTCTACCCAAAGGAACAGTCATCTTCCATATAATATCTGATCAAAG
CTTCACTGGCATAGTAGAGGCTTTACCTGGGGCATCCCCTAACACAGCACCAAAAAGCCC
AACAGATTGCCTATTCAGTCCTGCCCTTGGCCCCAACCCCGGTATAATAGTTTACTCAGT
TGGTGTACAAGCTGACCCATCAGCAGACACGGTAGCAAGGATTCCTTTTGCTTCCAAAGA
TTTCAAAGATTGGATGGAAGCTTTAAGTCTCAAAGTTGGGGACACAGTTGAGTTTAAGAT
TTGCGAAGTGAAACGAACCGCAGCTAAAAGCGCAGTTGATATAAAACTGCTGACTCGTCA
TTCCGATTATGATGTAAACAATGCTGCCAGTCGGCGAAGAACGCTTAGTCATTCAATGTC
GGCTGCGTCTTTGAAGCTGGAAACATTGCCAGAGGAAGCTTCCTTTCCAACTATTGTGCT
TGAGAATGTACCAGTGAAGAGCAAATCTACCACACCAGAAGTAACCATGTCGCCCAAAAA
ACCTTCAAGTGAAGTAAATATTGCCAAAGAAGATAAGGATGAAAGTGAAATTGTTGAAAA
ATTGTCAGAAGCTTCATTCTCTCCAAGATCAGATAATATTGAAACATCGTGTGGTGAACA
ATGTTACGGTTGGATAAGCACCTTAAAAGACACGTTCGGATTCATAGAATCGCTCAACCA
TGGAAGCGAAATTTTCTTTCACTACAGTGAGATGCAAGCTCCTGTGGATAAATATAAAGC
TGGCTGTCCTGTTACTTATGTAACTGGAATTAAAGAAGAGAAAGCTTGTGCATTGCAAGT
TGAAGTGATAACAGATGAGGAAATGCCAACTTCTGATGTTGTGTCAAGTAAAATAATCAA
AGGCAAGGTGTTGAAGCCACTTAAGTCAGTAAATCCATCTCAAACAAGTTACCAAGGGTT
GATAGAATACAAAGAAACCAATGAAGCAGATGAAACCACGATCAAGACAATCTCATACAG
CCCACTTAGTCTTAGTGATAGGAGAGATTTCATTCAAGTTGGTGACAAAGTGACTTTCCA
GGTCAGCACAGACATTAACAGCAACTGCCAAAGAGCTGCTAATGTGAATGTGAATCGTGA
AACTGTCAAAGCTACAGTGGACAGCATTAAAGGAGAGTTCGGTTTCATAAACTACGAGGT
AAAGGGTGGAGATACCACTGGGGGCAGCGGTAAGCTATTTTTCCACATGTCTGAGGTGCG
TGATGCAACTCAACAAATAACTGCTGGTTCTACAGTAGAATTCTCAGTCATATACAACCA
AAGAAGCGGCAAGTTCTCTGCATCTAAAGTTCGACTTGCAGAAGCGCAACCAAAACAACA
AAGACCCGAACGCTTACGACTACGCAGCACTTGTGAAACCACTGGACCAACTGTGTCTGT
GTTGCGCCAACCAAGGGGTCCCACTGAAAACACAACGGGATTTGCTGTAGTGCGTCACAC
AGAAGCAGATGATAGTCAGGAAACAGAGAATGCATAAACCAACGACGAAAACATTATTTC
TGATTAAAGACCTATGATGCTTTGTTTAACTCTACTTGTTTTCTGTTTGGGGAATTCCCC
TCTCATTCCACATACCCAGCCATACATCAAACCTTGATATGCAGTTTTTGGATGCAGTGC
ACATATTGAAAAGTGACACTTTTTTTCCGTTTTTATTGTTTCAGTTCAAGGCAATTCACT
GCTTTTGATTTGTTTTCTATTTTTACTTTCAGGCGTTGTTCTGTTAAAATGTAAAAAAAC
GCCGACGCGATTTCGTGTCTGTTTGTCCAAAGCCAAAACATTCCTACAGTTTTAAAGTAA
CAAGAAAACGCCCGATTCCTTATTTTTCCCAATGAAATCAAATCAAAAAATCGGAATAAC
CAAACTCAAAGCCAGCCCACAATTGTCAACTTTTTAATATCAGTATTTTACACCTAAGTA
ACGGCGTCTATTGCGTTCTATTCTCAGTTTTCACTGTGCCTGCACCTCCAATGTGGTTGT
GCAAAATGACCCAAATTAGTTACTACAAGCTTATGTTCCTGCTGTTTAAATTGCAACTGA
ATCCCGTCCCAGTTAAAACTACTGCCTGAATCTGTTTCGGGTACGTTTCTGAATGTATCA
ATTTTGATATTGCAATTTTTGTGTCTTTTCTTCGGTGCTAACACGTATGTTCACATGTAG
ATTTGCGTTAAACACTGTTTCTTTTGCTACCTTGTTGTATATATTTGTTTATAATACTAC
CAACATTTTCAAAGGAAGCCAATTTTTTTCCCTTATTCACTTTGTTATTGACCCCCGTTC
ATCTTTATAATATATTTTGGGTGTTACGGTTTCATTTTGAAATAAAATTGCTGCTTTCAA
AA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[147-222] 1.71E-16 - T[343-409] 2.04E-14 - T[538-617] 6.39E-13 - T[822-890] 4.46E-11 - T[987-1059] 3.43E-10 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[155-217] 7.8E-12 - T[346-405] 3.3E-14 - T[547-608] 3.5E-6 - T[828-887] 5.0E-6 - T[989-1057] 1.9E-6 |
| SMART |
CSD (IPR011129) - T[155-218] 3.2E-11 - T[346-407] 4.1E-13 - T[547-612] 0.0014 - T[828-889] 0.26 - T[989-1059] 0.035 |
| CDD |
CSP_DNA-bd (IPR002059) - T[165-217] 1.80016E-9 - T[343-406] 1.77967E-11 - T[987-1058] 7.44931E-7 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[165-184] . - T[356-375] . - T[838-857] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.204 % | 362 | 4.31E-110 |