- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C14.172.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.172.v1.A.nonSL6-1
Possible name(s)
CSDE1
Gene model
Location
KhC14 [2,664,624 / 2,682,552]
Amino acid sequence
Length: 1,117
>KH.C14.172.v1.A.nonSL6-1
QSSFIQIMHRSIMWPTTNGTPQNSLSFSNSLSSLLGAQPFRPQTPVLSNQQKVLVNGGIS
ALQQHQQEAKERQMVNRRSLNRTASCGLFPQNGIVRPSALNQHRALQRSTSFDSPRMMST
PGSVTPISGSTSPIPLVAATAAGVTNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFH
YSQFHGEAHTLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVAFEVLSEDRILGEVTNP
APPLSLIPGQNLMNVVPGGTTGIAGHGYRPSEKGDPVISGKLGSLSYERMGEFFFLHYSA
SDLTNPDLALLPGDKVSFNIATEKRTGVMRARKITLVERAPPKRFNGIVTAMKESFGFIE
RSDIVKEIFFHYSEVLANVPDLHVGDHVEFSVQERNNKDVATEIRLLPLGTVQLEEISSE
LFVGTIDKPLPAKAPNKVMSESTIAGGDATSPNQTLKSGAIVNGGSSPPQPSLVLAGIIS
YIAPTGETFKIRFGEKDRAANCLHTLCKGDKVSFLTITDKRNGQQRAAGVTLLLDKTIAA
SKEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPTHHVRMSDEVQFTVLLDPVAE
KQRMHATRIRVLPKGTVIFHIISDQSFTGIVEALPGASPNTAPKSPTDCLFSPALGPNPG
IIVYSVGVQADPSADTVARIPFASKDFKDWMEALSLKVGDTVEFKICEVKRTAAKSAVDI
KLLTRHSDYDVNNAASRRRTLSHSMSAASLKLETLPEEASFPTIVLENVPVKSKSTTPEV
TMSPKKPSSEVNIAKEDKDESEIVEKLSEASFSPRSDNIETSCGEQCYGWISTLKDTFGF
IESLNHGSEIFFHYSEMQAPVDKYKAGCPVTYVTGIKEEKACALQVEVITDEEMPTSDVV
SSKIIKGKVLKPLKSVNPSQTSYQGLIEYKETNEADETTIKTISYSPLSLSDRRDFIQVG
DKVTFQVSTDINSNCQRAANVNVNRETVKATVDSIKGEFGFINYEVKGGDTTGGSGKLFF
HMSEVRDATQQITAGSTVEFSVIYNQRSGKFSASKVRLAEAQPKQQRPERLRLRSTCETT
GPTVSVLRQPRGPTENTTGFAVVRHTEADDSQETENA
Nucleotide sequence
Length: 4,469
>KH2012:KH.C14.172.v1.A.nonSL6-1
ATTTTACGTTCTTTAGTAGTAGAAACAGTAGCAATTAGGCCGTAGCCCGAAGAGCTTTCA
GTTCTAGAAATGTTCAGTAACTAATTCATTTTATTTCGGTAAATTACCGCGAGTTTGAAC
GTCAACCAAATTGCAGTTAAACGTAACTACTGCAACGGAGTGTGCAATTACAAGTCTTAC
AGCATATTCATAAAGAGCAAACAGCTTGTTTTTCAATACAAAAACCAACTAAGCAAAGAA
CCTCATATAACAAAGTTCATTTATACAGATTATGCACAGATCAATAATGTGGCCCACCAC
AAATGGAACACCACAAAATTCATTGTCTTTTAGCAACTCTCTCAGCAGTTTGCTTGGAGC
TCAACCATTTCGACCTCAAACACCTGTCCTATCAAACCAGCAAAAAGTTCTCGTAAATGG
TGGAATATCTGCCCTACAGCAACACCAGCAAGAAGCAAAAGAGCGCCAAATGGTGAACCG
ACGTTCCCTCAATCGCACAGCAAGTTGTGGTTTGTTTCCACAAAACGGGATTGTTCGACC
ATCTGCGCTTAACCAACACCGTGCATTACAAAGATCTACAAGTTTTGATTCGCCTCGAAT
GATGAGCACCCCAGGTTCTGTAACCCCAATATCTGGCTCTACATCCCCGATACCTCTTGT
TGCTGCCACAGCTGCAGGCGTGACAAACAGCAATGGCTACAGAAGTCGTGAGACTGGTGT
CATCGAAAAGTTGCTTGTTTCTTACGGATTTATTAAATGCGCTGACAGAGAAGGCCGTTT
GTTTTTCCACTATAGTCAGTTCCATGGAGAAGCCCACACTTTGCACATAAATGATGAAAT
TGAGTTTGAAGTGTCAATGGACACACGCACTGGTAAACCTGTTGCAGTTCAAGTTGTAAA
ACTTCAGAAAGGAACTGTAGCCTTTGAAGTACTAAGTGAAGATCGCATACTAGGTGAAGT
GACAAACCCAGCACCACCACTATCCCTAATACCTGGTCAGAATTTAATGAACGTGGTTCC
TGGTGGAACTACTGGCATAGCTGGTCATGGGTATAGGCCCAGTGAAAAAGGAGACCCAGT
TATATCTGGAAAACTTGGGAGTTTATCATATGAAAGAATGGGGGAGTTTTTCTTCTTACA
TTACTCAGCAAGCGATCTAACCAACCCCGACCTTGCATTGCTACCTGGTGATAAAGTTTC
ATTCAACATTGCTACCGAAAAAAGAACTGGAGTAATGCGAGCACGAAAGATAACTCTGGT
AGAGAGAGCTCCTCCAAAAAGATTCAACGGGATTGTTACGGCAATGAAGGAATCTTTCGG
ATTTATTGAAAGATCTGATATCGTGAAAGAGATATTTTTCCACTACAGTGAAGTTCTTGC
TAACGTGCCAGACTTACACGTTGGTGACCATGTTGAATTCAGCGTGCAGGAACGTAACAA
CAAAGACGTGGCAACAGAAATCCGGTTGTTGCCGCTAGGAACTGTTCAACTCGAAGAAAT
TTCGAGCGAACTATTTGTTGGGACAATCGATAAACCACTTCCTGCAAAAGCTCCAAACAA
GGTTATGAGCGAGTCTACCATCGCTGGTGGTGATGCAACTTCTCCCAACCAGACTTTAAA
GAGTGGGGCCATCGTTAACGGGGGTTCTTCACCCCCCCAACCATCCCTCGTACTTGCTGG
CATTATATCTTACATTGCACCCACTGGTGAAACATTTAAAATACGATTTGGAGAGAAGGA
TAGAGCTGCTAACTGCCTCCATACACTTTGTAAAGGAGATAAGGTTTCATTCTTGACAAT
AACCGACAAACGAAATGGTCAACAGCGGGCTGCAGGTGTTACTTTGCTACTTGATAAAAC
TATCGCGGCAAGCAAGGAGAAGCGAGAACAAGGTATCGTAGCTGCAGTCAAAGAGGGGTT
CGGGTTCATCAAGTGTGTGGAGCGTGACTCTCGCCTCTTCTTCCACTGCTGTGAGATGTT
GGATCCCACTCATCATGTGAGGATGTCAGATGAAGTTCAATTTACCGTCCTCCTGGACCC
AGTTGCTGAAAAACAAAGGATGCATGCAACGCGTATTCGAGTTCTACCCAAAGGAACAGT
CATCTTCCATATAATATCTGATCAAAGCTTCACTGGCATAGTAGAGGCTTTACCTGGGGC
ATCCCCTAACACAGCACCAAAAAGCCCAACAGATTGCCTATTCAGTCCTGCCCTTGGCCC
CAACCCCGGTATAATAGTTTACTCAGTTGGTGTACAAGCTGACCCATCAGCAGACACGGT
AGCAAGGATTCCTTTTGCTTCCAAAGATTTCAAAGATTGGATGGAAGCTTTAAGTCTCAA
AGTTGGGGACACAGTTGAGTTTAAGATTTGCGAAGTGAAACGAACCGCAGCTAAAAGCGC
AGTTGATATAAAACTGCTGACTCGTCATTCCGATTATGATGTAAACAATGCTGCCAGTCG
GCGAAGAACGCTTAGTCATTCAATGTCGGCTGCGTCTTTGAAGCTGGAAACATTGCCAGA
GGAAGCTTCCTTTCCAACTATTGTGCTTGAGAATGTACCAGTGAAGAGCAAATCTACCAC
ACCAGAAGTAACCATGTCGCCCAAAAAACCTTCAAGTGAAGTAAATATTGCCAAAGAAGA
TAAGGATGAAAGTGAAATTGTTGAAAAATTGTCAGAAGCTTCATTCTCTCCAAGATCAGA
TAATATTGAAACATCGTGTGGTGAACAATGTTACGGTTGGATAAGCACCTTAAAAGACAC
GTTCGGATTCATAGAATCGCTCAACCATGGAAGCGAAATTTTCTTTCACTACAGTGAGAT
GCAAGCTCCTGTGGATAAATATAAAGCTGGCTGTCCTGTTACTTATGTAACTGGAATTAA
AGAAGAGAAAGCTTGTGCATTGCAAGTTGAAGTGATAACAGATGAGGAAATGCCAACTTC
TGATGTTGTGTCAAGTAAAATAATCAAAGGCAAGGTGTTGAAGCCACTTAAGTCAGTAAA
TCCATCTCAAACAAGTTACCAAGGGTTGATAGAATACAAAGAAACCAATGAAGCAGATGA
AACCACGATCAAGACAATCTCATACAGCCCACTTAGTCTTAGTGATAGGAGAGATTTCAT
TCAAGTTGGTGACAAAGTGACTTTCCAGGTCAGCACAGACATTAACAGCAACTGCCAAAG
AGCTGCTAATGTGAATGTGAATCGTGAAACTGTCAAAGCTACAGTGGACAGCATTAAAGG
AGAGTTCGGTTTCATAAACTACGAGGTAAAGGGTGGAGATACCACTGGGGGCAGCGGTAA
GCTATTTTTCCACATGTCTGAGGTGCGTGATGCAACTCAACAAATAACTGCTGGTTCTAC
AGTAGAATTCTCAGTCATATACAACCAAAGAAGCGGCAAGTTCTCTGCATCTAAAGTTCG
ACTTGCAGAAGCGCAACCAAAACAACAAAGACCCGAACGCTTACGACTACGCAGCACTTG
TGAAACCACTGGACCAACTGTGTCTGTGTTGCGCCAACCAAGGGGTCCCACTGAAAACAC
AACGGGATTTGCTGTAGTGCGTCACACAGAAGCAGATGATAGTCAGGAAACAGAGAATGC
ATAAACCAACGACGAAAACATTATTTCTGATTAAAGACCTATGATGCTTTGTTTAACTCT
ACTTGTTTTCTGTTTGGGGAATTCCCCTCTCATTCCACATACCCAGCCATACATCAAACC
TTGATATGCAGTTTTTGGATGCAGTGCACATATTGAAAAGTGACACTTTTTTTCCGTTTT
TATTGTTTCAGTTCAAGGCAATTCACTGCTTTTGATTTGTTTTCTATTTTTACTTTCAGG
CGTTGTTCTGTTAAAATGTAAAAAAACGCCGACGCGATTTCGTGTCTGTTTGTCCAAAGC
CAAAACATTCCTACAGTTTTAAAGTAACAAGAAAACGCCCGATTCCTTATTTTTCCCAAT
GAAATCAAATCAAAAAATCGGAATAACCAAACTCAAAGCCAGCCCACAATTGTCAACTTT
TTAATATCAGTATTTTACACCTAAGTAACGGCGTCTATTGCGTTCTATTCTCAGTTTTCA
CTGTGCCTGCACCTCCAATGTGGTTGTGCAAAATGACCCAAATTAGTTACTACAAGCTTA
TGTTCCTGCTGTTTAAATTGCAACTGAATCCCGTCCCAGTTAAAACTACTGCCTGAATCT
GTTTCGGGTACGTTTCTGAATGTATCAATTTTGATATTGCAATTTTTGTGTCTTTTCTTC
GGTGCTAACACGTATGTTCACATGTAGATTTGCGTTAAACACTGTTTCTTTTGCTACCTT
GTTGTATATATTTGTTTATAATACTACCAACATTTTCAAAGGAAGCCAATTTTTTTCCCT
TATTCACTTTGTTATTGACCCCCGTTCATCTTTATAATATATTTTGGGTGTTACGGTTTC
ATTTTGAAATAAAATTGCTGCTTTCAAAA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[147-222] 1.71E-16 - T[343-409] 2.04E-14 - T[538-617] 6.39E-13 - T[822-890] 4.46E-11 - T[987-1059] 3.43E-10 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[155-217] 7.8E-12 - T[346-405] 3.3E-14 - T[547-608] 3.5E-6 - T[828-887] 5.0E-6 - T[989-1057] 1.9E-6 |
| SMART |
CSD (IPR011129) - T[155-218] 3.2E-11 - T[346-407] 4.1E-13 - T[547-612] 0.0014 - T[828-889] 0.26 - T[989-1059] 0.035 |
| CDD |
CSP_DNA-bd (IPR002059) - T[165-217] 1.80016E-9 - T[343-406] 1.77967E-11 - T[987-1058] 7.44931E-7 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[165-184] . - T[356-375] . - T[838-857] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CSDE1_HUMAN | 40.204 % | 362 | 4.31E-110 |