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TRANSCRIPT CARD

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  1. Clone 'cien164561' > 
  2. Clone 'csef046l24' > 
  3. Transcript 'Phfumi.CG.MTP2014.S1...' > 
  4. Transcript 'Haaura.CG.MTP2014.S2...' > 
  5. Transcript 'KH2012:KH.C14.172.v1...'

Transcript Model

Transcript Id

KH2012:KH.C14.172.v1.R.ND1-1

Possible name(s)

CSDE1

Gene model

KH2012:KH.C14.172

Location

KhC14 [2,664,600 / 2,682,552]

Sequences

Amino acid sequence

Length: 1,117

>KH.C14.172.v1.R.ND1-1
QSSFIQIMHRSIMWPTTNGTPQNSLSFSNSLSSLLGAQPFRPQTPVLSNQQKVLVNGGIS
ALQQHQQEAKERQMVNRRSLNRTASCGLFPQNGIVRPSALNQHRALQRSTSFDSPRMMST
PGSVTPISGSTSPIPLVAATAAGVTNSNGYRSRETGVIEKLLVSYGFIKCADREGRLFFH
YSQFHGEAHTLHINDEIEFEVSMDTRTGKPVAVQVVKLQKGTVAFEVLSEDRILGEVTNP
APPLSLIPGQNLMNVVPGGTTGIAGHGYRPSEKGDPVISGKLGSLSYERMGEFFFLHYSA
SDLTNPDLALLPGDKVSFNIATEKRTGVMRARKITLVERAPPKRFNGIVTAMKESFGFIE
RSDIVKEIFFHYSEVLANVPDLHVGDHVEFSVQERNNKDVATEIRLLPLGTVQLEEISSE
LFVGTIDKPLPAKAPNKVMSESTIAGGDATSPNQTLKSGAIVNGGSSPPQPSLVLAGIIS
YIAPTGETFKIRFGEKDRAANCLHTLCKGDKVSFLTITDKRNGQQRAAGVTLLLDKTIAA
SKEKREQGIVAAVKEGFGFIKCVERDSRLFFHCCEMLDPTHHVRMSDEVQFTVLLDPVAE
KQRMHATRIRVLPKGTVIFHIISDQSFTGIVEALPGASPNTAPKSPTDCLFSPALGPNPG
IIVYSVGVQADPSADTVARIPFASKDFKDWMEALSLKVGDTVEFKICEVKRTAAKSAVDI
KLLTRHSDYDVNNAASRRRTLSHSMSAASLKLETLPEEASFPTIVLENVPVKSKSTTPEV
TMSPKKPSSEVNIAKEDKDESEIVEKLSEASFSPRSDNIETSCGEQCYGWISTLKDTFGF
IESLNHGSEIFFHYSEMQAPVDKYKAGCPVTYVTGIKEEKACALQVEVITDEEMPTSDVV
SSKIIKGKVLKPLKSVNPSQTSYQGLIEYKETNEADETTIKTISYSPLSLSDRRDFIQVG
DKVTFQVSTDINSNCQRAANVNVNRETVKATVDSIKGEFGFINYEVKGGDTTGGSGKLFF
HMSEVRDATQQITAGSTVEFSVIYNQRSGKFSASKVRLAEAQPKQQRPERLRLRSTCETT
GPTVSVLRQPRGPTENTTGFAVVRHTEADDSQETENA

Nucleotide sequence

Length: 4,493

>KH2012:KH.C14.172.v1.R.ND1-1
TAACATACCTACACAACTTCCAGGATTTTACGTTCTTTAGTAGTAGAAACAGTAGCAATT
AGGCCGTAGCCCGAAGAGCTTTCAGTTCTAGAAATGTTCAGTAACTAATTCATTTTATTT
CGGTAAATTACCGCGAGTTTGAACGTCAACCAAATTGCAGTTAAACGTAACTACTGCAAC
GGAGTGTGCAATTACAAGTCTTACAGCATATTCATAAAGAGCAAACAGCTTGTTTTTCAA
TACAAAAACCAACTAAGCAAAGAACCTCATATAACAAAGTTCATTTATACAGATTATGCA
CAGATCAATAATGTGGCCCACCACAAATGGAACACCACAAAATTCATTGTCTTTTAGCAA
CTCTCTCAGCAGTTTGCTTGGAGCTCAACCATTTCGACCTCAAACACCTGTCCTATCAAA
CCAGCAAAAAGTTCTCGTAAATGGTGGAATATCTGCCCTACAGCAACACCAGCAAGAAGC
AAAAGAGCGCCAAATGGTGAACCGACGTTCCCTCAATCGCACAGCAAGTTGTGGTTTGTT
TCCACAAAACGGGATTGTTCGACCATCTGCGCTTAACCAACACCGTGCATTACAAAGATC
TACAAGTTTTGATTCGCCTCGAATGATGAGCACCCCAGGTTCTGTAACCCCAATATCTGG
CTCTACATCCCCGATACCTCTTGTTGCTGCCACAGCTGCAGGCGTGACAAACAGCAATGG
CTACAGAAGTCGTGAGACTGGTGTCATCGAAAAGTTGCTTGTTTCTTACGGATTTATTAA
ATGCGCTGACAGAGAAGGCCGTTTGTTTTTCCACTATAGTCAGTTCCATGGAGAAGCCCA
CACTTTGCACATAAATGATGAAATTGAGTTTGAAGTGTCAATGGACACACGCACTGGTAA
ACCTGTTGCAGTTCAAGTTGTAAAACTTCAGAAAGGAACTGTAGCCTTTGAAGTACTAAG
TGAAGATCGCATACTAGGTGAAGTGACAAACCCAGCACCACCACTATCCCTAATACCTGG
TCAGAATTTAATGAACGTGGTTCCTGGTGGAACTACTGGCATAGCTGGTCATGGGTATAG
GCCCAGTGAAAAAGGAGACCCAGTTATATCTGGAAAACTTGGGAGTTTATCATATGAAAG
AATGGGGGAGTTTTTCTTCTTACATTACTCAGCAAGCGATCTAACCAACCCCGACCTTGC
ATTGCTACCTGGTGATAAAGTTTCATTCAACATTGCTACCGAAAAAAGAACTGGAGTAAT
GCGAGCACGAAAGATAACTCTGGTAGAGAGAGCTCCTCCAAAAAGATTCAACGGGATTGT
TACGGCAATGAAGGAATCTTTCGGATTTATTGAAAGATCTGATATCGTGAAAGAGATATT
TTTCCACTACAGTGAAGTTCTTGCTAACGTGCCAGACTTACACGTTGGTGACCATGTTGA
ATTCAGCGTGCAGGAACGTAACAACAAAGACGTGGCAACAGAAATCCGGTTGTTGCCGCT
AGGAACTGTTCAACTCGAAGAAATTTCGAGCGAACTATTTGTTGGGACAATCGATAAACC
ACTTCCTGCAAAAGCTCCAAACAAGGTTATGAGCGAGTCTACCATCGCTGGTGGTGATGC
AACTTCTCCCAACCAGACTTTAAAGAGTGGGGCCATCGTTAACGGGGGTTCTTCACCCCC
CCAACCATCCCTCGTACTTGCTGGCATTATATCTTACATTGCACCCACTGGTGAAACATT
TAAAATACGATTTGGAGAGAAGGATAGAGCTGCTAACTGCCTCCATACACTTTGTAAAGG
AGATAAGGTTTCATTCTTGACAATAACCGACAAACGAAATGGTCAACAGCGGGCTGCAGG
TGTTACTTTGCTACTTGATAAAACTATCGCGGCAAGCAAGGAGAAGCGAGAACAAGGTAT
CGTAGCTGCAGTCAAAGAGGGGTTCGGGTTCATCAAGTGTGTGGAGCGTGACTCTCGCCT
CTTCTTCCACTGCTGTGAGATGTTGGATCCCACTCATCATGTGAGGATGTCAGATGAAGT
TCAATTTACCGTCCTCCTGGACCCAGTTGCTGAAAAACAAAGGATGCATGCAACGCGTAT
TCGAGTTCTACCCAAAGGAACAGTCATCTTCCATATAATATCTGATCAAAGCTTCACTGG
CATAGTAGAGGCTTTACCTGGGGCATCCCCTAACACAGCACCAAAAAGCCCAACAGATTG
CCTATTCAGTCCTGCCCTTGGCCCCAACCCCGGTATAATAGTTTACTCAGTTGGTGTACA
AGCTGACCCATCAGCAGACACGGTAGCAAGGATTCCTTTTGCTTCCAAAGATTTCAAAGA
TTGGATGGAAGCTTTAAGTCTCAAAGTTGGGGACACAGTTGAGTTTAAGATTTGCGAAGT
GAAACGAACCGCAGCTAAAAGCGCAGTTGATATAAAACTGCTGACTCGTCATTCCGATTA
TGATGTAAACAATGCTGCCAGTCGGCGAAGAACGCTTAGTCATTCAATGTCGGCTGCGTC
TTTGAAGCTGGAAACATTGCCAGAGGAAGCTTCCTTTCCAACTATTGTGCTTGAGAATGT
ACCAGTGAAGAGCAAATCTACCACACCAGAAGTAACCATGTCGCCCAAAAAACCTTCAAG
TGAAGTAAATATTGCCAAAGAAGATAAGGATGAAAGTGAAATTGTTGAAAAATTGTCAGA
AGCTTCATTCTCTCCAAGATCAGATAATATTGAAACATCGTGTGGTGAACAATGTTACGG
TTGGATAAGCACCTTAAAAGACACGTTCGGATTCATAGAATCGCTCAACCATGGAAGCGA
AATTTTCTTTCACTACAGTGAGATGCAAGCTCCTGTGGATAAATATAAAGCTGGCTGTCC
TGTTACTTATGTAACTGGAATTAAAGAAGAGAAAGCTTGTGCATTGCAAGTTGAAGTGAT
AACAGATGAGGAAATGCCAACTTCTGATGTTGTGTCAAGTAAAATAATCAAAGGCAAGGT
GTTGAAGCCACTTAAGTCAGTAAATCCATCTCAAACAAGTTACCAAGGGTTGATAGAATA
CAAAGAAACCAATGAAGCAGATGAAACCACGATCAAGACAATCTCATACAGCCCACTTAG
TCTTAGTGATAGGAGAGATTTCATTCAAGTTGGTGACAAAGTGACTTTCCAGGTCAGCAC
AGACATTAACAGCAACTGCCAAAGAGCTGCTAATGTGAATGTGAATCGTGAAACTGTCAA
AGCTACAGTGGACAGCATTAAAGGAGAGTTCGGTTTCATAAACTACGAGGTAAAGGGTGG
AGATACCACTGGGGGCAGCGGTAAGCTATTTTTCCACATGTCTGAGGTGCGTGATGCAAC
TCAACAAATAACTGCTGGTTCTACAGTAGAATTCTCAGTCATATACAACCAAAGAAGCGG
CAAGTTCTCTGCATCTAAAGTTCGACTTGCAGAAGCGCAACCAAAACAACAAAGACCCGA
ACGCTTACGACTACGCAGCACTTGTGAAACCACTGGACCAACTGTGTCTGTGTTGCGCCA
ACCAAGGGGTCCCACTGAAAACACAACGGGATTTGCTGTAGTGCGTCACACAGAAGCAGA
TGATAGTCAGGAAACAGAGAATGCATAAACCAACGACGAAAACATTATTTCTGATTAAAG
ACCTATGATGCTTTGTTTAACTCTACTTGTTTTCTGTTTGGGGAATTCCCCTCTCATTCC
ACATACCCAGCCATACATCAAACCTTGATATGCAGTTTTTGGATGCAGTGCACATATTGA
AAAGTGACACTTTTTTTCCGTTTTTATTGTTTCAGTTCAAGGCAATTCACTGCTTTTGAT
TTGTTTTCTATTTTTACTTTCAGGCGTTGTTCTGTTAAAATGTAAAAAAACGCCGACGCG
ATTTCGTGTCTGTTTGTCCAAAGCCAAAACATTCCTACAGTTTTAAAGTAACAAGAAAAC
GCCCGATTCCTTATTTTTCCCAATGAAATCAAATCAAAAAATCGGAATAACCAAACTCAA
AGCCAGCCCACAATTGTCAACTTTTTAATATCAGTATTTTACACCTAAGTAACGGCGTCT
ATTGCGTTCTATTCTCAGTTTTCACTGTGCCTGCACCTCCAATGTGGTTGTGCAAAATGA
CCCAAATTAGTTACTACAAGCTTATGTTCCTGCTGTTTAAATTGCAACTGAATCCCGTCC
CAGTTAAAACTACTGCCTGAATCTGTTTCGGGTACGTTTCTGAATGTATCAATTTTGATA
TTGCAATTTTTGTGTCTTTTCTTCGGTGCTAACACGTATGTTCACATGTAGATTTGCGTT
AAACACTGTTTCTTTTGCTACCTTGTTGTATATATTTGTTTATAATACTACCAACATTTT
CAAAGGAAGCCAATTTTTTTCCCTTATTCACTTTGTTATTGACCCCCGTTCATCTTTATA
ATATATTTTGGGTGTTACGGTTTCATTTTGAAATAAAATTGCTGCTTTCAAAA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[147-222] 1.71E-16 - T[343-409] 2.04E-14 - T[538-617] 6.39E-13 - T[822-890] 4.46E-11 - T[987-1059] 3.43E-10
Pfam
CSP_DNA-bd (IPR002059) - T[155-217] 7.8E-12 - T[346-405] 3.3E-14 - T[547-608] 3.5E-6 - T[828-887] 5.0E-6 - T[989-1057] 1.9E-6
SMART
CSD (IPR011129) - T[155-218] 3.2E-11 - T[346-407] 4.1E-13 - T[547-612] 0.0014 - T[828-889] 0.26 - T[989-1059] 0.035
CDD
CSP_DNA-bd (IPR002059) - T[165-217] 1.80016E-9 - T[343-406] 1.77967E-11 - T[987-1058] 7.44931E-7
ProSitePatterns
Cold-shock_CS (IPR019844) - T[165-184] . - T[356-375] . - T[838-857] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CSDE1_HUMAN 40.204 % 362 4.31E-110