- Transcript 'KH2012:KH.C2.108.v3....' >
- Transcript 'KH2012:KH.C6.132.v5....' >
- Transcript 'KH2012:KH.C3.99.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'KH2012:KH.C14.178.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.178.v1.A.SL2-1
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
KhC14 [3,655,475 / 3,657,434]
Amino acid sequence
Length: 220
>KH.C14.178.v1.A.SL2-1
VYNLEQLVQNVLIFRNMPTKKDPNKPRGRMTGYAYFVQTCREEHKRKHPNEQVVFAEFSR
KCAKRWKPMTDKEKKTFTDMAEKDRQRYEREMKDYVPAAGEAKKKKKKKDPNAPKRPQSA
FFLFCADRRAPLKAENPGWTVGEIAKALGKKWAAASPDTKKKYAEQGEVEKSKYNKEMEK
YRSQQEASNHGDAKRQKMSEKATASSSASSSESESDIESD
Nucleotide sequence
Length: 1,709
>KH2012:KH.C14.178.v1.A.SL2-1
GTGTACAATCTTGAGCAACTTGTACAAAACGTGTTAATATTCAGAAATATGCCAACCAAA
AAGGACCCAAATAAACCGAGAGGTCGAATGACCGGGTATGCGTACTTTGTGCAAACTTGC
CGTGAAGAGCATAAAAGAAAACATCCAAATGAACAAGTTGTGTTCGCCGAATTTTCTCGA
AAGTGCGCAAAACGATGGAAGCCAATGACAGACAAAGAAAAGAAAACTTTCACTGATATG
GCAGAGAAAGATCGGCAAAGATACGAACGAGAAATGAAAGATTATGTTCCTGCTGCAGGA
GAAGCAAAGAAGAAGAAGAAAAAGAAGGATCCAAATGCTCCAAAACGTCCTCAATCTGCC
TTCTTCCTTTTCTGCGCTGACAGAAGAGCACCACTCAAAGCTGAAAACCCTGGTTGGACT
GTAGGAGAAATTGCAAAGGCATTAGGAAAGAAGTGGGCTGCTGCTTCACCAGATACAAAG
AAGAAGTACGCAGAACAAGGGGAAGTTGAGAAAAGCAAGTACAACAAGGAAATGGAAAAA
TATCGTTCCCAACAGGAGGCATCAAACCACGGTGATGCAAAGCGTCAAAAGATGAGTGAG
AAGGCAACAGCATCCTCTTCCGCAAGCTCCAGTGAGAGTGAAAGTGACATCGAGAGTGAC
TGAGATCCCCAACCTACCGCTGGACCCGCCCCTCCCCTACAAAGCACAGTGGTGCAAATA
CATTTTACGAGTCAATAGAATTGCTGCGGCAAATAAAAAACGTCGTTTTATCAAATGTTG
CAACTGCAAATTTTGAATTAAAAAAATATTTTTTTTATACCCCTGTTGCCAAAGTTTTAT
TAACTCTTGTCAATTTTATCCTAAAACCAGCCCAGCAACTGCGACATTTTTTTCTACTAT
ACTCTAATTTTTGTCACCCTGGCTTTTGCTGTTGTTTTTTTTCTGTTCCTGTTCTATTCC
TGTTGTACATAAATAACGTTGTTGCACAACTGACGATAATTCCAGTTTTATAAGAACCTC
ACTCCACAGGATTCAGGTTCATAAAACAAAGCAACATAATTACTTTATGAGTTTTATGAC
ATTATAACACCAGTTAGTTTCCAGTACCAACCTTCGATATCTCGTTGAACAATGTATTAG
TTGCCCTCTTTGTTATTTTTCAGTTATGTCTTTCACTGCCCGTGTCTCCAATAGCACTGT
CGCCCTGGCCAATTGAAGCTACGTCTCCAGGGTTTGACATTCATGCTTTAAAGTGATACT
GAGCAACGTTTTGTTAATAAAATGTTTTGCCTCGCATACATAAGTGTCTAATATTCACAC
AACTCTAAACGCTAGAACTTACTCTGTTTTACTATAGTTTAGTTACTGGCTGCTTATAAT
AGTGCAAACTGTTTGGCCACTTATTTTTCTGACTGTTTAAGTAAAATGGGACTCCAACTG
GGATATTGCAAGCTGGCTAAAATGGGACTCCCATGATGTTGCAAACAATTTAAATCGGAC
AAAAAAGACCTAGGGCATAAAACTGGTCTTTTAGGGATAGACCTGAAACAACTACAACTA
TTTGTCTTGAATTGTAGTTGCTTTGTAGCGACTAAGTTTAATATTACTAACCTTTCCTGG
CTCTTCATTTGATCTTGTCCTCCTTTCACAAAGAACATTCGACACTCATTTCATTCTAGA
TTACATTGAGAAAAATTATATAATATACA
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[15-97] 3.9E-31 - T[98-198] 2.1E-28 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[19-98] 2.36E-24 - T[101-184] 4.58E-26 |
| Pfam |
HMG_box_dom (IPR009071) - T[23-95] 2.5E-21 - T[114-182] 3.9E-22 |
| SMART |
HMG_box_dom (IPR009071) - T[25-97] 4.2E-20 - T[113-183] 6.8E-20 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[26-96] 16.803 - T[114-182] 19.296 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 55.758 % | 189 | 1.06E-60 |
| HMGB2_HUMAN | 55.152 % | 177 | 3.58E-56 |
| HGB1A_HUMAN | 52.121 % | 175 | 1.65E-55 |